Wall clock time and date at job start Mon Mar 30 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46782 * 2 1 4 4 C 1.52998 * 109.47399 * 60.00195 * 3 2 1 5 5 C 1.52999 * 109.47246 * 299.99741 * 3 2 1 6 6 C 1.50704 * 109.46771 * 180.02562 * 3 2 1 7 7 C 1.38235 * 119.99943 * 179.97438 * 6 3 2 8 8 C 1.38230 * 120.00080 * 180.02562 * 7 6 3 9 9 C 1.38235 * 120.00296 * 359.95530 * 8 7 6 10 10 C 1.50701 * 120.00138 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47217 * 340.00362 * 10 9 8 12 12 N 1.46901 * 109.46883 * 219.99742 * 10 9 8 13 13 C 1.50699 * 109.46837 * 100.00154 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38235 * 119.99778 * 0.27610 * 9 8 7 22 22 C 1.38236 * 120.00149 * 0.02562 * 6 3 2 23 23 H 1.09001 * 109.46912 * 299.99928 * 1 2 3 24 24 H 1.08997 * 109.47385 * 59.99906 * 1 2 3 25 25 H 1.09000 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46912 * 240.00072 * 2 1 3 27 27 H 1.08994 * 109.47445 * 119.99569 * 2 1 3 28 28 H 1.09000 * 109.47303 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.47076 * 299.99825 * 4 3 2 30 30 H 1.08997 * 109.46934 * 59.99804 * 4 3 2 31 31 H 1.09001 * 109.47435 * 300.00532 * 5 3 2 32 32 H 1.09003 * 109.46855 * 60.00404 * 5 3 2 33 33 H 1.09000 * 109.47274 * 180.02562 * 5 3 2 34 34 H 1.08003 * 119.99873 * 359.97438 * 7 6 3 35 35 H 1.08005 * 120.00250 * 179.97438 * 8 7 6 36 36 H 1.00899 * 111.00549 * 300.00105 * 12 10 9 37 37 H 1.00907 * 110.99790 * 63.95798 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07997 * 120.00201 * 179.72563 * 21 9 8 40 40 H 1.07997 * 120.00089 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 -0.0006 7 6 4.2381 2.6397 -0.0013 8 6 5.6204 2.6398 -0.0024 9 6 6.3117 1.4427 -0.0019 10 6 7.8187 1.4427 -0.0026 11 1 8.1818 2.4082 -0.3547 12 7 8.3080 0.3812 -0.8923 13 6 8.3216 1.1969 1.3966 14 1 7.6201 1.0544 2.2054 15 6 9.6773 1.1528 1.6441 16 7 10.1161 0.9328 2.8642 17 14 10.8905 1.3972 0.2449 18 1 11.2127 2.8410 0.1157 19 1 12.1336 0.6361 0.5291 20 1 10.2898 0.9087 -1.0222 21 6 5.6206 0.2455 -0.0061 22 6 4.2382 0.2454 -0.0016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8936 3.1914 1.2494 29 1 0.4399 2.1638 1.2493 30 1 1.8933 1.6500 2.1392 31 1 1.8933 1.6500 -2.1393 32 1 0.4399 2.1638 -1.2492 33 1 1.8936 3.1914 -1.2495 34 1 3.6981 3.5750 -0.0018 35 1 6.1605 3.5751 -0.0033 36 1 7.9847 -0.5245 -0.5868 37 1 8.0382 0.5578 -1.8485 38 1 11.0699 0.8979 3.0376 39 1 6.1606 -0.6898 -0.0102 40 1 3.6982 -0.6899 -0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:22 Heat of formation + Delta-G solvation = 10.437836 kcal Electronic energy + Delta-G solvation = -18049.090003 eV Core-core repulsion = 15441.977186 eV Total energy + Delta-G solvation = -2607.112818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69183 -37.19227 -34.35153 -31.81894 -30.88195 -30.30442 -28.50327 -27.27542 -26.30486 -24.55892 -22.47739 -21.67745 -20.04572 -18.54353 -16.78884 -16.38528 -15.05593 -14.85197 -14.76184 -14.34488 -14.02913 -13.90922 -13.47636 -13.38033 -12.93920 -12.62087 -12.25779 -12.08018 -12.00605 -11.88487 -11.74131 -11.39217 -11.20216 -10.87929 -10.76852 -10.64646 -10.49741 -10.14978 -9.99888 -9.82415 -9.23020 -8.51093 -8.35079 -7.83144 -7.17119 -5.97734 -4.07466 1.97015 1.97783 3.52777 3.63000 3.94829 4.33692 4.69339 4.73231 4.74696 4.94666 5.29060 5.31538 5.32610 5.40442 5.46573 5.48347 5.58541 5.66353 5.76719 5.82241 5.86856 5.90163 5.92647 5.97716 6.01978 6.06589 6.14373 6.23247 6.37872 6.38894 6.51998 6.63743 6.85502 7.05100 7.08673 7.36746 7.57762 7.67649 8.20410 8.36678 8.73221 9.03408 9.66698 11.12093 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042623 B = 0.005007 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.767403 B = 5591.072913 C = 5614.298895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.019 4.019 4 C -0.139 4.139 5 C -0.138 4.138 6 C -0.096 4.096 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.068 4.068 10 C 0.217 3.783 11 H 0.043 0.957 12 N -0.834 5.834 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.084 3.916 16 N -0.901 5.901 17 Si 0.866 3.134 18 H -0.298 1.298 19 H -0.304 1.304 20 H -0.192 1.192 21 C -0.117 4.117 22 C -0.123 4.123 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.329 0.671 37 H 0.307 0.693 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 0.376 -8.348 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.019 4.019 4 C -0.196 4.196 5 C -0.195 4.195 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.138 4.138 9 C -0.070 4.070 10 C 0.108 3.892 11 H 0.061 0.939 12 N -0.363 5.363 13 C -0.556 4.556 14 H 0.086 0.914 15 C -0.120 4.120 16 N -0.538 5.538 17 Si 0.694 3.306 18 H -0.225 1.225 19 H -0.232 1.232 20 H -0.113 1.113 21 C -0.135 4.135 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.705 0.565 -8.022 18.539 hybrid contribution -0.201 -0.008 -0.425 0.470 sum -16.906 0.557 -8.446 18.907 Atomic orbital electron populations 1.21913 0.96155 1.01299 1.01910 1.21649 0.95454 0.95975 1.02141 1.19400 0.91383 0.95490 0.95666 1.21931 1.00318 1.00295 0.97093 1.21924 1.00390 1.00209 0.96980 1.19553 0.93890 0.93329 1.02828 1.20821 0.94121 0.96918 1.01655 1.21039 0.93612 0.98095 1.01084 1.21217 0.99384 0.92415 0.94010 1.18589 0.84311 0.92083 0.94267 0.93873 1.60081 1.66017 1.06060 1.04153 1.20729 0.92590 1.51612 0.90680 0.91354 1.24998 0.98690 0.92599 0.95703 1.69966 1.14561 1.48590 1.20671 0.87211 0.78633 0.76929 0.87876 1.22525 1.23188 1.11335 1.20935 0.93569 0.98107 1.00935 1.21021 0.94150 0.97221 1.01673 0.92488 0.92564 0.93086 0.91800 0.91650 0.92607 0.92515 0.92522 0.92737 0.92503 0.92648 0.87216 0.86636 0.85685 0.88184 0.92835 0.86621 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.21 37.16 0.34 -1.02 16 2 C -0.11 -1.22 3.65 -26.73 -0.10 -1.32 16 3 C -0.02 -0.23 0.63 -155.66 -0.10 -0.33 16 4 C -0.14 -1.56 7.94 37.16 0.29 -1.26 16 5 C -0.14 -1.44 7.93 37.16 0.29 -1.14 16 6 C -0.10 -1.44 4.76 -104.62 -0.50 -1.94 16 7 C -0.12 -1.87 8.71 -39.59 -0.34 -2.21 16 8 C -0.12 -2.22 9.67 -39.59 -0.38 -2.60 16 9 C -0.07 -1.38 4.88 -104.62 -0.51 -1.89 16 10 C 0.22 4.97 2.35 -70.02 -0.16 4.80 16 11 H 0.04 1.02 7.43 -51.93 -0.39 0.63 16 12 N -0.83 -17.17 5.65 -6.65 -0.04 -17.21 16 13 C -0.52 -14.57 9.29 -34.44 -0.32 -14.89 16 14 H 0.07 2.14 7.98 -52.49 -0.42 1.72 16 15 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 17 Si 0.87 21.77 26.94 -169.99 -4.58 17.19 16 18 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 19 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 20 H -0.19 -4.44 5.16 56.52 0.29 -4.15 16 21 C -0.12 -2.16 9.29 -39.58 -0.37 -2.53 16 22 C -0.12 -1.97 8.98 -39.58 -0.36 -2.32 16 23 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 24 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 27 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 28 H 0.05 0.63 7.39 -51.93 -0.38 0.24 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.05 0.58 7.39 -51.93 -0.38 0.19 16 34 H 0.11 1.51 7.10 -52.48 -0.37 1.14 16 35 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 36 H 0.33 6.55 7.33 -39.29 -0.29 6.26 16 37 H 0.31 5.49 9.06 -39.29 -0.36 5.14 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.12 2.09 6.65 -52.49 -0.35 1.74 16 40 H 0.12 1.60 5.90 -52.49 -0.31 1.29 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -30.95 306.44 -7.83 -38.78 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.30 Total: 10.28 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.31 Total: -26.29 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.74 Total: -44.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.58 Total: 17.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.95 -7.83 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.214 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds