Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46782 * 2 1 4 4 C 1.52998 * 109.47399 * 60.00195 * 3 2 1 5 5 C 1.52999 * 109.47246 * 299.99741 * 3 2 1 6 6 C 1.50704 * 109.46771 * 180.02562 * 3 2 1 7 7 C 1.38235 * 119.99943 * 179.97438 * 6 3 2 8 8 C 1.38230 * 120.00080 * 180.02562 * 7 6 3 9 9 C 1.38235 * 120.00296 * 359.95530 * 8 7 6 10 10 C 1.50701 * 120.00138 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47217 * 340.00362 * 10 9 8 12 12 N 1.46901 * 109.46883 * 219.99742 * 10 9 8 13 13 C 1.50699 * 109.46837 * 100.00154 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38235 * 119.99778 * 0.27610 * 9 8 7 22 22 C 1.38236 * 120.00149 * 0.02562 * 6 3 2 23 23 H 1.09001 * 109.46912 * 299.99928 * 1 2 3 24 24 H 1.08997 * 109.47385 * 59.99906 * 1 2 3 25 25 H 1.09000 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46912 * 240.00072 * 2 1 3 27 27 H 1.08994 * 109.47445 * 119.99569 * 2 1 3 28 28 H 1.09000 * 109.47303 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.47076 * 299.99825 * 4 3 2 30 30 H 1.08997 * 109.46934 * 59.99804 * 4 3 2 31 31 H 1.09001 * 109.47435 * 300.00532 * 5 3 2 32 32 H 1.09003 * 109.46855 * 60.00404 * 5 3 2 33 33 H 1.09000 * 109.47274 * 180.02562 * 5 3 2 34 34 H 1.08003 * 119.99873 * 359.97438 * 7 6 3 35 35 H 1.08005 * 120.00250 * 179.97438 * 8 7 6 36 36 H 1.00899 * 111.00549 * 300.00105 * 12 10 9 37 37 H 1.00907 * 110.99790 * 63.95798 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07997 * 120.00201 * 179.72563 * 21 9 8 40 40 H 1.07997 * 120.00089 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 -0.0006 7 6 4.2381 2.6397 -0.0013 8 6 5.6204 2.6398 -0.0024 9 6 6.3117 1.4427 -0.0019 10 6 7.8187 1.4427 -0.0026 11 1 8.1818 2.4082 -0.3547 12 7 8.3080 0.3812 -0.8923 13 6 8.3216 1.1969 1.3966 14 1 7.6201 1.0544 2.2054 15 6 9.6773 1.1528 1.6441 16 7 10.1161 0.9328 2.8642 17 14 10.8905 1.3972 0.2449 18 1 11.2127 2.8410 0.1157 19 1 12.1336 0.6361 0.5291 20 1 10.2898 0.9087 -1.0222 21 6 5.6206 0.2455 -0.0061 22 6 4.2382 0.2454 -0.0016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8936 3.1914 1.2494 29 1 0.4399 2.1638 1.2493 30 1 1.8933 1.6500 2.1392 31 1 1.8933 1.6500 -2.1393 32 1 0.4399 2.1638 -1.2492 33 1 1.8936 3.1914 -1.2495 34 1 3.6981 3.5750 -0.0018 35 1 6.1605 3.5751 -0.0033 36 1 7.9847 -0.5245 -0.5868 37 1 8.0382 0.5578 -1.8485 38 1 11.0699 0.8979 3.0376 39 1 6.1606 -0.6898 -0.0102 40 1 3.6982 -0.6899 -0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -8.329249 kcal Electronic energy + Delta-G solvation = -18049.903805 eV Core-core repulsion = 15441.977186 eV Total energy + Delta-G solvation = -2607.926619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91575 -38.43523 -35.97407 -33.90678 -32.05934 -31.49729 -29.73277 -28.23909 -28.11182 -25.71063 -23.92357 -22.98802 -21.57675 -19.61134 -18.90870 -17.63502 -16.70236 -16.41007 -15.78877 -15.59629 -15.56991 -15.34717 -14.59907 -14.37465 -14.32770 -14.18171 -13.82802 -13.41445 -13.30749 -12.82503 -12.77554 -12.68477 -12.65535 -12.19633 -12.03036 -11.98591 -11.78547 -11.48881 -11.37378 -11.26384 -11.10801 -10.73511 -9.71239 -9.28618 -8.87189 -8.24037 -6.37182 0.60016 0.60696 1.50918 1.57666 1.94646 2.61324 2.96539 3.15018 3.72174 3.81078 4.10022 4.18599 4.22416 4.24517 4.26167 4.41699 4.54890 4.58843 4.67456 4.75817 4.79783 4.86917 4.99000 5.03313 5.06072 5.15117 5.17831 5.19877 5.27889 5.30633 5.33832 5.52657 5.54853 5.55037 5.69573 5.82258 5.92294 6.13611 6.25388 6.51127 6.77815 7.04113 7.40840 8.89570 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042623 B = 0.005007 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.767403 B = 5591.072913 C = 5614.298895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.019 4.019 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.135 4.135 9 C -0.099 4.099 10 C 0.226 3.774 11 H 0.039 0.961 12 N -0.835 5.835 13 C -0.514 4.514 14 H 0.019 0.981 15 C 0.024 3.976 16 N -0.954 5.954 17 Si 0.932 3.068 18 H -0.301 1.301 19 H -0.314 1.314 20 H -0.156 1.156 21 C -0.128 4.128 22 C -0.125 4.125 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.334 0.666 37 H 0.330 0.670 38 H 0.262 0.738 39 H 0.113 0.887 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.860 0.545 -10.571 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.019 4.019 4 C -0.196 4.196 5 C -0.193 4.193 6 C -0.087 4.087 7 C -0.134 4.134 8 C -0.154 4.154 9 C -0.101 4.101 10 C 0.116 3.884 11 H 0.057 0.943 12 N -0.365 5.365 13 C -0.553 4.553 14 H 0.038 0.962 15 C -0.174 4.174 16 N -0.593 5.593 17 Si 0.757 3.243 18 H -0.229 1.229 19 H -0.243 1.243 20 H -0.076 1.076 21 C -0.147 4.147 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.007 0.733 -10.267 21.615 hybrid contribution 0.333 -0.067 0.332 0.475 sum -18.674 0.667 -9.934 21.163 Atomic orbital electron populations 1.21886 0.94378 1.02084 1.02557 1.21645 0.97029 0.94943 1.01677 1.19486 0.88846 0.96746 0.96813 1.21940 1.01805 0.99856 0.96024 1.21911 1.01732 0.99842 0.95773 1.20017 0.96040 0.92522 1.00100 1.21083 0.93174 0.98497 1.00631 1.21180 0.94978 0.97544 1.01649 1.21006 0.97942 0.93907 0.97282 1.18227 0.86363 0.92250 0.91519 0.94278 1.59739 1.66014 1.05651 1.05097 1.20965 0.91709 1.50188 0.92405 0.96240 1.25949 1.00851 0.92555 0.98064 1.70117 1.14852 1.51216 1.23150 0.86277 0.75548 0.76363 0.86123 1.22864 1.24280 1.07619 1.21013 0.94797 0.97399 1.01479 1.21298 0.93279 0.98811 1.00875 0.92087 0.91596 0.92371 0.91805 0.92630 0.92689 0.90238 0.93940 0.93056 0.90415 0.92611 0.84754 0.86630 0.85141 0.85752 0.92951 0.86899 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.21 71.98 0.66 -1.47 16 2 C -0.12 -2.13 3.65 30.60 0.11 -2.02 16 3 C -0.02 -0.39 0.63 -52.93 -0.03 -0.42 16 4 C -0.14 -2.73 7.94 71.98 0.57 -2.16 16 5 C -0.14 -2.35 7.93 71.98 0.57 -1.78 16 6 C -0.09 -2.43 4.76 -19.86 -0.09 -2.53 16 7 C -0.12 -3.51 8.71 22.27 0.19 -3.32 16 8 C -0.13 -4.94 9.67 22.27 0.22 -4.73 16 9 C -0.10 -4.03 4.88 -19.87 -0.10 -4.13 16 10 C 0.23 10.38 2.35 43.42 0.10 10.49 16 11 H 0.04 1.83 7.43 -2.39 -0.02 1.81 16 12 N -0.83 -33.15 5.65 -174.96 -0.99 -34.14 16 13 C -0.51 -29.88 9.29 25.60 0.24 -29.64 16 14 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 15 C 0.02 1.43 5.47 84.66 0.46 1.89 16 16 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 17 Si 0.93 45.49 26.94 68.60 1.85 47.34 16 18 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 19 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 20 H -0.16 -6.68 5.16 99.48 0.51 -6.17 16 21 C -0.13 -4.71 9.29 22.27 0.21 -4.51 16 22 C -0.12 -3.84 8.98 22.27 0.20 -3.64 16 23 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 24 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.18 7.51 -2.39 -0.02 1.16 16 27 H 0.05 1.13 7.52 -2.39 -0.02 1.12 16 28 H 0.05 1.08 7.39 -2.39 -0.02 1.06 16 29 H 0.08 1.20 6.43 -2.39 -0.02 1.19 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 33 H 0.05 0.97 7.39 -2.39 -0.02 0.95 16 34 H 0.13 3.36 7.10 -2.91 -0.02 3.34 16 35 H 0.12 4.11 8.04 -2.91 -0.02 4.08 16 36 H 0.33 12.99 7.33 -89.69 -0.66 12.33 16 37 H 0.33 10.99 9.06 -89.69 -0.81 10.18 16 38 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 39 H 0.11 4.09 6.65 -2.91 -0.02 4.07 16 40 H 0.14 3.55 5.90 -2.91 -0.02 3.53 16 Total: -1.00 -68.91 306.44 3.84 -65.07 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.63 Total: 31.26 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.31 Total: -47.95 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -0.69 Total: -95.72 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.85 Total: 47.34 kcal Total: -68.91 3.84 -65.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.740 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds