Wall clock time and date at job start Mon Mar 30 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46706 * 2 1 4 4 C 1.52995 * 109.46974 * 59.99930 * 3 2 1 5 5 C 1.52999 * 109.47167 * 299.99800 * 3 2 1 6 6 C 1.50699 * 109.46539 * 179.97438 * 3 2 1 7 7 C 1.38245 * 119.99714 * 180.02562 * 6 3 2 8 8 C 1.38229 * 119.99949 * 179.97438 * 7 6 3 9 9 C 1.38240 * 120.00030 * 359.95742 * 8 7 6 10 10 C 1.50696 * 119.99830 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47511 * 19.99837 * 10 9 8 12 12 N 1.46894 * 109.47259 * 140.00179 * 10 9 8 13 13 C 1.50706 * 109.47259 * 259.99832 * 10 9 8 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.38225 * 120.00002 * 0.27297 * 9 8 7 22 22 C 1.38230 * 120.00640 * 359.97438 * 6 3 2 23 23 H 1.08996 * 109.47421 * 299.99979 * 1 2 3 24 24 H 1.09001 * 109.46878 * 60.00367 * 1 2 3 25 25 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46898 * 240.00077 * 2 1 3 27 27 H 1.08996 * 109.47164 * 119.99971 * 2 1 3 28 28 H 1.09001 * 109.47020 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47561 * 299.99970 * 4 3 2 30 30 H 1.09007 * 109.47445 * 60.00236 * 4 3 2 31 31 H 1.08996 * 109.47130 * 300.00083 * 5 3 2 32 32 H 1.08998 * 109.46798 * 60.00379 * 5 3 2 33 33 H 1.09001 * 109.46645 * 180.02562 * 5 3 2 34 34 H 1.08001 * 119.99545 * 359.97438 * 7 6 3 35 35 H 1.07998 * 119.99850 * 179.97438 * 8 7 6 36 36 H 1.00907 * 110.99654 * 296.04440 * 12 10 9 37 37 H 1.00901 * 111.00146 * 59.99612 * 12 10 9 38 38 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 39 39 H 1.08006 * 120.00416 * 179.72817 * 21 9 8 40 40 H 1.08003 * 119.99516 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5299 2.1638 -1.2493 6 6 3.5469 1.4425 0.0006 7 6 4.2381 2.6398 0.0013 8 6 5.6204 2.6398 0.0024 9 6 6.3116 1.4426 0.0038 10 6 7.8186 1.4427 0.0056 11 1 8.1815 2.4086 0.3570 12 7 8.3072 0.3822 0.8968 13 6 8.3227 1.1953 -1.3930 14 1 7.6218 1.0528 -2.2023 15 6 9.6785 1.1510 -1.6394 16 7 10.5319 1.3241 -0.6538 17 14 10.3031 0.8437 -3.3728 18 1 10.4681 -0.6164 -3.5880 19 1 9.3264 1.3814 -4.3535 20 1 11.6118 1.5217 -3.5548 21 6 5.6205 0.2455 -0.0017 22 6 4.2382 0.2455 0.0016 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8935 3.1913 1.2494 29 1 0.4399 2.1637 1.2492 30 1 1.8932 1.6500 2.1393 31 1 1.8933 1.6500 -2.1392 32 1 0.4399 2.1637 -1.2492 33 1 1.8936 3.1913 -1.2494 34 1 3.6980 3.5750 0.0009 35 1 6.1604 3.5751 0.0025 36 1 8.0367 0.5599 1.8525 37 1 7.9841 -0.5238 0.5920 38 1 10.2075 1.4833 0.2463 39 1 6.1605 -0.6898 -0.0051 40 1 3.6981 -0.6899 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:24 Heat of formation + Delta-G solvation = -1.480516 kcal Electronic energy + Delta-G solvation = -18046.886406 eV Core-core repulsion = 15439.256770 eV Total energy + Delta-G solvation = -2607.629636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68045 -37.16817 -34.44498 -31.54412 -30.74009 -30.24219 -28.43124 -27.28636 -25.73533 -24.39131 -22.45719 -21.70431 -20.32950 -18.57414 -16.88799 -16.28047 -15.16765 -14.77447 -14.58983 -14.25129 -14.04447 -13.63444 -13.49128 -13.37471 -12.94137 -12.80430 -12.24869 -12.03805 -11.97255 -11.81619 -11.63490 -11.26693 -11.14554 -10.88411 -10.72166 -10.64565 -10.44133 -10.14165 -10.04409 -9.96471 -8.82902 -8.35437 -8.30251 -7.76711 -7.42150 -6.15332 -3.98255 1.97902 1.99465 3.49156 3.52261 3.67954 4.34112 4.63898 4.68665 4.74047 4.93739 5.28388 5.31222 5.39068 5.44555 5.46225 5.51370 5.58027 5.65258 5.78501 5.85335 5.85747 5.89360 5.96031 5.96939 6.05289 6.09821 6.16933 6.24943 6.36956 6.38517 6.55194 6.67278 6.97535 7.08038 7.09743 7.48024 7.62240 8.02187 8.32973 8.68861 8.79293 9.08446 9.85302 11.24308 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.005049 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.500744 B = 5544.150376 C = 5698.406829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.019 4.019 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.068 4.068 10 C 0.236 3.764 11 H 0.036 0.964 12 N -0.829 5.829 13 C -0.606 4.606 14 H 0.046 0.954 15 C 0.037 3.963 16 N -0.892 5.892 17 Si 1.066 2.934 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.120 4.120 22 C -0.123 4.123 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.301 0.699 37 H 0.325 0.675 38 H 0.290 0.710 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.396 -0.286 2.502 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.019 4.019 4 C -0.195 4.195 5 C -0.196 4.196 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.140 4.140 9 C -0.071 4.071 10 C 0.127 3.873 11 H 0.054 0.946 12 N -0.357 5.357 13 C -0.645 4.645 14 H 0.064 0.936 15 C -0.172 4.172 16 N -0.526 5.526 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.211 1.211 21 C -0.138 4.138 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.257 -0.207 1.391 16.318 hybrid contribution -2.408 -0.056 0.996 2.606 sum -18.665 -0.263 2.387 18.819 Atomic orbital electron populations 1.21913 0.96140 1.01298 1.01915 1.21646 0.95453 0.95988 1.02112 1.19391 0.91387 0.95464 0.95648 1.21925 1.00370 1.00222 0.97004 1.21926 1.00311 1.00275 0.97071 1.19533 0.93854 0.93302 1.03154 1.20824 0.94113 0.96883 1.01672 1.21044 0.93559 0.98133 1.01300 1.21458 1.00098 0.92269 0.93244 1.18365 0.82979 0.91893 0.94100 0.94630 1.59467 1.67228 1.05507 1.03474 1.21698 0.94127 1.57283 0.91375 0.93608 1.25624 0.93132 0.93563 1.04899 1.70523 1.37823 1.41266 1.03037 0.83613 0.75608 0.76572 0.74672 1.21621 1.21763 1.21120 1.20929 0.93509 0.98136 1.01242 1.21018 0.94143 0.97188 1.01752 0.92542 0.92499 0.93083 0.91709 0.91803 0.92655 0.92494 0.92731 0.92594 0.92506 0.92631 0.87278 0.86797 0.88846 0.86144 0.89763 0.86804 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.21 37.16 0.34 -1.04 16 2 C -0.11 -1.25 3.65 -26.73 -0.10 -1.34 16 3 C -0.02 -0.23 0.63 -155.66 -0.10 -0.33 16 4 C -0.14 -1.49 7.93 37.15 0.29 -1.20 16 5 C -0.14 -1.56 7.94 37.16 0.29 -1.27 16 6 C -0.10 -1.52 4.76 -104.62 -0.50 -2.02 16 7 C -0.12 -1.94 8.71 -39.58 -0.34 -2.29 16 8 C -0.12 -2.38 9.67 -39.58 -0.38 -2.76 16 9 C -0.07 -1.47 4.88 -104.63 -0.51 -1.98 16 10 C 0.24 5.87 2.47 -70.02 -0.17 5.69 16 11 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 12 N -0.83 -19.22 7.62 -6.65 -0.05 -19.27 16 13 C -0.61 -17.08 8.70 -34.44 -0.30 -17.38 16 14 H 0.05 1.32 7.74 -52.48 -0.41 0.92 16 15 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 16 N -0.89 -27.14 13.51 55.43 0.75 -26.39 16 17 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.12 -2.33 9.29 -39.59 -0.37 -2.69 16 22 C -0.12 -2.05 8.98 -39.58 -0.36 -2.40 16 23 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 24 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 27 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 28 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 29 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 33 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 34 H 0.11 1.56 7.10 -52.49 -0.37 1.19 16 35 H 0.11 2.17 8.04 -52.49 -0.42 1.75 16 36 H 0.30 6.20 9.06 -39.29 -0.36 5.84 16 37 H 0.33 7.28 7.35 -39.29 -0.29 6.99 16 38 H 0.29 8.81 6.39 -40.82 -0.26 8.55 16 39 H 0.11 2.19 6.68 -52.48 -0.35 1.84 16 40 H 0.11 1.64 5.90 -52.48 -0.31 1.34 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -30.26 310.61 -8.12 -38.38 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.12 Total: 12.07 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -2.29 Total: -30.02 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.70 Total: -45.66 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.26 -8.12 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.901 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds