Wall clock time and date at job start Mon Mar 30 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46706 * 2 1 4 4 C 1.52995 * 109.46974 * 59.99930 * 3 2 1 5 5 C 1.52999 * 109.47167 * 299.99800 * 3 2 1 6 6 C 1.50699 * 109.46539 * 179.97438 * 3 2 1 7 7 C 1.38245 * 119.99714 * 180.02562 * 6 3 2 8 8 C 1.38229 * 119.99949 * 179.97438 * 7 6 3 9 9 C 1.38240 * 120.00030 * 359.95742 * 8 7 6 10 10 C 1.50696 * 119.99830 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47511 * 19.99837 * 10 9 8 12 12 N 1.46894 * 109.47259 * 140.00179 * 10 9 8 13 13 C 1.50706 * 109.47259 * 259.99832 * 10 9 8 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.38225 * 120.00002 * 0.27297 * 9 8 7 22 22 C 1.38230 * 120.00640 * 359.97438 * 6 3 2 23 23 H 1.08996 * 109.47421 * 299.99979 * 1 2 3 24 24 H 1.09001 * 109.46878 * 60.00367 * 1 2 3 25 25 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46898 * 240.00077 * 2 1 3 27 27 H 1.08996 * 109.47164 * 119.99971 * 2 1 3 28 28 H 1.09001 * 109.47020 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47561 * 299.99970 * 4 3 2 30 30 H 1.09007 * 109.47445 * 60.00236 * 4 3 2 31 31 H 1.08996 * 109.47130 * 300.00083 * 5 3 2 32 32 H 1.08998 * 109.46798 * 60.00379 * 5 3 2 33 33 H 1.09001 * 109.46645 * 180.02562 * 5 3 2 34 34 H 1.08001 * 119.99545 * 359.97438 * 7 6 3 35 35 H 1.07998 * 119.99850 * 179.97438 * 8 7 6 36 36 H 1.00907 * 110.99654 * 296.04440 * 12 10 9 37 37 H 1.00901 * 111.00146 * 59.99612 * 12 10 9 38 38 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 39 39 H 1.08006 * 120.00416 * 179.72817 * 21 9 8 40 40 H 1.08003 * 119.99516 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5299 2.1638 -1.2493 6 6 3.5469 1.4425 0.0006 7 6 4.2381 2.6398 0.0013 8 6 5.6204 2.6398 0.0024 9 6 6.3116 1.4426 0.0038 10 6 7.8186 1.4427 0.0056 11 1 8.1815 2.4086 0.3570 12 7 8.3072 0.3822 0.8968 13 6 8.3227 1.1953 -1.3930 14 1 7.6218 1.0528 -2.2023 15 6 9.6785 1.1510 -1.6394 16 7 10.5319 1.3241 -0.6538 17 14 10.3031 0.8437 -3.3728 18 1 10.4681 -0.6164 -3.5880 19 1 9.3264 1.3814 -4.3535 20 1 11.6118 1.5217 -3.5548 21 6 5.6205 0.2455 -0.0017 22 6 4.2382 0.2455 0.0016 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8935 3.1913 1.2494 29 1 0.4399 2.1637 1.2492 30 1 1.8932 1.6500 2.1393 31 1 1.8933 1.6500 -2.1392 32 1 0.4399 2.1637 -1.2492 33 1 1.8936 3.1913 -1.2494 34 1 3.6980 3.5750 0.0009 35 1 6.1604 3.5751 0.0025 36 1 8.0367 0.5599 1.8525 37 1 7.9841 -0.5238 0.5920 38 1 10.2075 1.4833 0.2463 39 1 6.1605 -0.6898 -0.0051 40 1 3.6981 -0.6899 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:24 Heat of formation + Delta-G solvation = -18.884204 kcal Electronic energy + Delta-G solvation = -18047.641087 eV Core-core repulsion = 15439.256770 eV Total energy + Delta-G solvation = -2608.384317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96679 -38.48364 -36.18587 -33.44146 -32.07279 -31.49941 -29.76782 -28.13728 -27.61099 -25.67401 -24.04561 -23.08583 -21.89954 -19.67329 -18.91182 -17.63928 -16.76502 -16.09323 -15.80483 -15.59547 -15.55909 -15.39966 -14.64699 -14.51633 -14.27253 -14.25791 -13.84962 -13.41731 -13.04142 -12.84749 -12.78603 -12.67436 -12.57681 -12.21118 -12.05240 -12.00951 -11.91446 -11.49818 -11.37413 -11.15525 -10.82356 -10.50276 -9.78840 -9.49536 -9.14902 -8.40438 -6.26899 0.53445 0.54596 1.53505 1.62167 1.79614 2.60703 2.92145 3.29488 3.68147 3.77113 4.07599 4.12982 4.15519 4.20559 4.23197 4.38182 4.52953 4.54980 4.62540 4.71258 4.77360 4.84470 4.95213 5.00953 5.03508 5.11940 5.15294 5.17842 5.23718 5.27754 5.30228 5.49931 5.52456 5.64517 5.76799 5.85196 5.91675 6.17251 6.22376 6.65702 6.75046 7.01712 7.64469 8.95289 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.005049 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.500744 B = 5544.150376 C = 5698.406829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.018 4.018 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.112 4.112 8 C -0.139 4.139 9 C -0.099 4.099 10 C 0.240 3.760 11 H 0.003 0.997 12 N -0.835 5.835 13 C -0.614 4.614 14 H 0.032 0.968 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 1.112 2.888 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.283 1.283 21 C -0.130 4.130 22 C -0.121 4.121 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.316 0.684 37 H 0.330 0.670 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.249 -0.667 2.025 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.018 4.018 4 C -0.194 4.194 5 C -0.195 4.195 6 C -0.086 4.086 7 C -0.130 4.130 8 C -0.157 4.157 9 C -0.101 4.101 10 C 0.131 3.869 11 H 0.021 0.979 12 N -0.363 5.363 13 C -0.653 4.653 14 H 0.050 0.950 15 C -0.215 4.215 16 N -0.554 5.554 17 Si 0.936 3.064 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.208 1.208 21 C -0.148 4.148 22 C -0.139 4.139 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.131 -0.590 0.927 19.163 hybrid contribution -1.656 0.079 1.196 2.045 sum -20.788 -0.511 2.124 20.902 Atomic orbital electron populations 1.21885 0.94268 1.02135 1.02592 1.21646 0.97115 0.94833 1.01708 1.19486 0.88570 0.96871 0.96890 1.21923 1.01843 0.99801 0.95814 1.21934 1.01864 0.99806 0.95934 1.20022 0.96167 0.92329 1.00110 1.21072 0.92838 0.98658 1.00443 1.21119 0.95109 0.97238 1.02278 1.21136 0.98117 0.94011 0.96846 1.18030 0.85623 0.90579 0.92708 0.97919 1.59229 1.67633 1.05295 1.04177 1.21977 0.94094 1.56478 0.92748 0.94957 1.27000 0.93829 0.92812 1.07831 1.70642 1.38123 1.43683 1.02984 0.83001 0.75392 0.77248 0.70793 1.20175 1.20435 1.20829 1.20956 0.94865 0.97080 1.01922 1.21306 0.93002 0.98947 1.00623 0.91699 0.91919 0.92312 0.92379 0.92002 0.92709 0.90217 0.93265 0.93670 0.90127 0.92752 0.84655 0.87509 0.87240 0.85660 0.91062 0.87299 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.21 71.98 0.66 -1.44 16 2 C -0.12 -2.14 3.65 30.60 0.11 -2.03 16 3 C -0.02 -0.38 0.63 -52.93 -0.03 -0.41 16 4 C -0.14 -2.47 7.93 71.98 0.57 -1.90 16 5 C -0.14 -2.66 7.94 71.98 0.57 -2.09 16 6 C -0.09 -2.49 4.76 -19.86 -0.09 -2.59 16 7 C -0.11 -3.57 8.71 22.27 0.19 -3.38 16 8 C -0.14 -5.50 9.67 22.27 0.22 -5.29 16 9 C -0.10 -4.36 4.88 -19.87 -0.10 -4.46 16 10 C 0.24 12.46 2.47 43.42 0.11 12.57 16 11 H 0.00 0.17 7.87 -2.38 -0.02 0.15 16 12 N -0.83 -40.02 7.62 -174.95 -1.33 -41.36 16 13 C -0.61 -35.63 8.70 25.60 0.22 -35.41 16 14 H 0.03 1.91 7.74 -2.91 -0.02 1.89 16 15 C -0.01 -0.66 5.39 84.65 0.46 -0.20 16 16 N -0.92 -57.31 13.51 21.45 0.29 -57.02 16 17 Si 1.11 52.03 29.90 68.60 2.05 54.09 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 C -0.13 -5.05 9.29 22.27 0.21 -4.85 16 22 C -0.12 -3.85 8.98 22.27 0.20 -3.65 16 23 H 0.06 0.80 6.43 -2.39 -0.02 0.78 16 24 H 0.06 0.80 6.43 -2.39 -0.02 0.79 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 1.16 7.52 -2.39 -0.02 1.14 16 27 H 0.06 1.17 7.51 -2.39 -0.02 1.15 16 28 H 0.05 1.00 7.39 -2.39 -0.02 0.98 16 29 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.18 6.43 -2.39 -0.02 1.17 16 33 H 0.05 1.06 7.39 -2.39 -0.02 1.04 16 34 H 0.14 3.56 7.10 -2.91 -0.02 3.54 16 35 H 0.11 4.25 8.04 -2.91 -0.02 4.23 16 36 H 0.32 13.44 9.06 -89.69 -0.81 12.63 16 37 H 0.33 15.17 7.35 -89.69 -0.66 14.51 16 38 H 0.28 17.54 6.39 -92.71 -0.59 16.95 16 39 H 0.11 4.24 6.68 -2.91 -0.02 4.22 16 40 H 0.14 3.70 5.90 -2.91 -0.02 3.68 16 Total: -1.00 -66.40 310.61 4.05 -62.35 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.26 Total: 37.06 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 3.29 Total: -55.12 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -1.04 Total: -98.38 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.09 kcal Total: -66.40 4.05 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.468 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds