Wall clock time and date at job start Mon Mar 30 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47048 * 2 1 4 4 C 1.38261 * 119.99760 * 270.16582 * 3 2 1 5 5 C 1.38218 * 119.99743 * 180.27484 * 4 3 2 6 6 C 1.50703 * 119.99968 * 179.78900 * 5 4 3 7 7 C 1.38251 * 119.99953 * 359.51046 * 5 4 3 8 8 C 1.50707 * 119.99906 * 180.25282 * 7 5 4 9 9 C 1.38212 * 120.00276 * 0.28458 * 7 5 4 10 10 C 1.50699 * 120.00181 * 179.97438 * 9 7 5 11 11 H 1.08996 * 109.47493 * 39.99188 * 10 9 7 12 12 N 1.46895 * 109.47207 * 159.99687 * 10 9 7 13 13 C 1.52999 * 109.46905 * 279.99533 * 10 9 7 14 14 C 1.50699 * 109.47252 * 175.00089 * 13 10 9 15 15 H 1.08001 * 120.00056 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00319 * 179.97438 * 14 13 10 17 17 N 1.31508 * 120.00221 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99578 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00034 * 18 16 14 20 20 H 1.48502 * 109.46977 * 210.00023 * 18 16 14 21 21 H 1.48495 * 109.47374 * 329.99689 * 18 16 14 22 22 C 1.38210 * 120.00367 * 89.99723 * 3 2 1 23 23 H 1.08996 * 109.47339 * 300.00159 * 1 2 3 24 24 H 1.09000 * 109.47286 * 60.00574 * 1 2 3 25 25 H 1.09000 * 109.46711 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47339 * 239.99841 * 2 1 3 27 27 H 1.09000 * 109.47286 * 119.99426 * 2 1 3 28 28 H 1.07998 * 120.00148 * 0.06449 * 4 3 2 29 29 H 1.09002 * 109.47152 * 269.72462 * 6 5 4 30 30 H 1.09001 * 109.46980 * 149.72562 * 6 5 4 31 31 H 1.09004 * 109.47113 * 29.72543 * 6 5 4 32 32 H 1.09003 * 109.47105 * 90.00482 * 8 7 5 33 33 H 1.09004 * 109.47155 * 210.00498 * 8 7 5 34 34 H 1.08997 * 109.47400 * 330.00215 * 8 7 5 35 35 H 1.00902 * 111.00709 * 59.99473 * 12 10 9 36 36 H 1.00900 * 111.00112 * 183.95240 * 12 10 9 37 37 H 1.09002 * 109.47290 * 295.00271 * 13 10 9 38 38 H 1.09001 * 109.47541 * 54.99498 * 13 10 9 39 39 H 0.97008 * 119.99864 * 179.97438 * 17 16 14 40 40 H 1.07998 * 119.99939 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2594 2.0737 -1.1974 5 6 2.7256 3.3749 -1.1974 6 6 2.9777 4.0850 -2.5026 7 6 2.9550 4.0270 -0.0001 8 6 3.4578 5.4477 -0.0002 9 6 2.7239 3.3758 1.1969 10 6 2.9746 4.0864 2.5019 11 1 2.6401 5.1207 2.4226 12 7 2.2332 3.4130 3.5765 13 6 4.4711 4.0574 2.8191 14 6 4.7377 4.8720 4.0586 15 1 3.9214 5.3611 4.5694 16 6 6.0237 4.9920 4.5413 17 7 6.2564 5.7033 5.6227 18 14 7.4353 4.1442 3.6591 19 1 7.9997 5.0593 2.6348 20 1 8.4910 3.7893 4.6414 21 1 6.9374 2.9102 3.0001 22 6 2.2626 2.0724 1.1969 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 2.0759 1.5658 -2.1327 29 1 4.0074 3.9136 -2.8164 30 1 2.8106 5.1542 -2.3726 31 1 2.2974 3.7006 -3.2626 32 1 2.6102 6.1331 -0.0012 33 1 4.0627 5.6191 0.8903 34 1 4.0643 5.6185 -0.8896 35 1 2.5254 2.4517 3.6701 36 1 2.3331 3.9080 4.4500 37 1 4.7872 3.0277 2.9860 38 1 5.0283 4.4772 1.9816 39 1 7.1612 5.7874 5.9625 40 1 2.0830 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:24 Heat of formation + Delta-G solvation = -7.739622 kcal Electronic energy + Delta-G solvation = -18152.088531 eV Core-core repulsion = 15544.187480 eV Total energy + Delta-G solvation = -2607.901051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73325 -35.97427 -34.72607 -32.59527 -31.14388 -30.85863 -28.59797 -27.09596 -26.08033 -24.49659 -22.81454 -21.44825 -19.68168 -19.17120 -17.01439 -16.04155 -15.66241 -14.66338 -14.37649 -14.17958 -13.90906 -13.71617 -13.30523 -13.13946 -13.06104 -12.55618 -12.53839 -12.28825 -12.19250 -12.04437 -11.60628 -11.51193 -11.24657 -11.09131 -10.97401 -10.69494 -10.54821 -10.32457 -10.11574 -9.74198 -9.22420 -8.63263 -8.23907 -8.05074 -7.71955 -6.13514 -4.12881 1.71910 1.79928 3.24780 3.32961 3.37636 4.05835 4.37734 4.89654 4.99250 5.08414 5.20274 5.25209 5.38686 5.42713 5.49587 5.53572 5.64968 5.65071 5.71486 5.85927 5.90383 5.95811 6.01612 6.05188 6.10745 6.20362 6.24063 6.30857 6.46336 6.60441 6.65696 6.87927 6.93629 7.08179 7.10466 7.29088 7.43561 7.67366 7.96651 8.21683 8.41804 8.89412 9.49038 10.99111 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.006563 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.827349 B = 4265.606333 C = 4742.633489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.130 4.130 5 C -0.090 4.090 6 C -0.111 4.111 7 C -0.087 4.087 8 C -0.126 4.126 9 C -0.052 4.052 10 C 0.136 3.864 11 H 0.083 0.917 12 N -0.840 5.840 13 C -0.037 4.037 14 C -0.524 4.524 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.107 4.107 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.328 0.672 36 H 0.351 0.649 37 H 0.015 0.985 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 -7.642 -13.673 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.148 4.148 5 C -0.090 4.090 6 C -0.167 4.167 7 C -0.087 4.087 8 C -0.182 4.182 9 C -0.052 4.052 10 C 0.025 3.975 11 H 0.101 0.899 12 N -0.369 5.369 13 C -0.076 4.076 14 C -0.562 4.562 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.125 4.125 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.165 0.835 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.540 -7.414 -13.976 17.979 hybrid contribution 1.900 -0.524 0.097 1.974 sum -6.640 -7.938 -13.879 17.313 Atomic orbital electron populations 1.21735 0.95042 1.01153 1.02279 1.20473 0.95956 0.93106 1.02271 1.19766 1.00226 0.95883 0.93248 1.20677 1.02658 0.94486 0.97020 1.19628 1.00404 0.94462 0.94537 1.20762 1.01518 1.00345 0.94123 1.19565 1.00555 0.96632 0.91953 1.20981 1.01104 0.92537 1.03618 1.20016 0.96252 0.94087 0.94851 1.20274 0.93851 0.96549 0.86860 0.89863 1.59268 1.60849 1.06290 1.10481 1.20321 0.92499 0.97264 0.97527 1.21053 0.94717 1.31199 1.09250 0.90761 1.24982 0.98765 0.94669 0.94626 1.69907 1.21202 1.40190 1.22388 0.86832 0.82315 0.80790 0.79707 1.20195 1.21351 1.19112 1.20805 0.99979 0.94560 0.97194 0.92319 0.92833 0.92860 0.91650 0.91285 0.87041 0.91627 0.91457 0.92149 0.91571 0.89674 0.92023 0.86054 0.83532 0.96650 0.96296 0.92645 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.08 -0.94 6.06 -27.88 -0.17 -1.11 16 3 C -0.09 -1.34 5.13 -104.62 -0.54 -1.88 16 4 C -0.13 -1.86 9.36 -39.58 -0.37 -2.23 16 5 C -0.09 -1.35 5.88 -104.62 -0.62 -1.97 16 6 C -0.11 -1.30 9.20 36.01 0.33 -0.96 16 7 C -0.09 -1.47 5.88 -104.62 -0.61 -2.09 16 8 C -0.13 -1.99 8.40 36.01 0.30 -1.69 16 9 C -0.05 -0.94 5.09 -104.62 -0.53 -1.48 16 10 C 0.14 2.73 2.31 -68.87 -0.16 2.57 16 11 H 0.08 1.74 7.28 -51.93 -0.38 1.36 16 12 N -0.84 -15.73 8.67 -5.66 -0.05 -15.78 16 13 C -0.04 -0.87 3.36 -27.88 -0.09 -0.97 16 14 C -0.52 -14.24 9.10 -34.44 -0.31 -14.55 16 15 H 0.07 2.15 7.39 -52.49 -0.39 1.76 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 18 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 22 C -0.11 -1.79 8.91 -39.58 -0.35 -2.15 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.74 6.70 -51.93 -0.35 0.40 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.54 5.08 -51.93 -0.26 1.27 16 34 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 35 H 0.33 5.79 7.29 -39.29 -0.29 5.50 16 36 H 0.35 6.89 7.90 -39.29 -0.31 6.58 16 37 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.02 0.45 5.92 -51.93 -0.31 0.14 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.12 1.95 6.25 -52.49 -0.33 1.63 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -29.52 313.92 -8.36 -37.88 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.29 Total: 10.18 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -2.85 Total: -27.71 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.72 Total: -42.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.52 -8.36 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.141 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds