Wall clock time and date at job start Mon Mar 30 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47048 * 2 1 4 4 C 1.38261 * 119.99760 * 270.16582 * 3 2 1 5 5 C 1.38218 * 119.99743 * 180.27484 * 4 3 2 6 6 C 1.50703 * 119.99968 * 179.78900 * 5 4 3 7 7 C 1.38251 * 119.99953 * 359.51046 * 5 4 3 8 8 C 1.50707 * 119.99906 * 180.25282 * 7 5 4 9 9 C 1.38212 * 120.00276 * 0.28458 * 7 5 4 10 10 C 1.50699 * 120.00181 * 179.97438 * 9 7 5 11 11 H 1.08996 * 109.47493 * 39.99188 * 10 9 7 12 12 N 1.46895 * 109.47207 * 159.99687 * 10 9 7 13 13 C 1.52999 * 109.46905 * 279.99533 * 10 9 7 14 14 C 1.50699 * 109.47252 * 175.00089 * 13 10 9 15 15 H 1.08001 * 120.00056 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00319 * 179.97438 * 14 13 10 17 17 N 1.31508 * 120.00221 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99578 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00034 * 18 16 14 20 20 H 1.48502 * 109.46977 * 210.00023 * 18 16 14 21 21 H 1.48495 * 109.47374 * 329.99689 * 18 16 14 22 22 C 1.38210 * 120.00367 * 89.99723 * 3 2 1 23 23 H 1.08996 * 109.47339 * 300.00159 * 1 2 3 24 24 H 1.09000 * 109.47286 * 60.00574 * 1 2 3 25 25 H 1.09000 * 109.46711 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47339 * 239.99841 * 2 1 3 27 27 H 1.09000 * 109.47286 * 119.99426 * 2 1 3 28 28 H 1.07998 * 120.00148 * 0.06449 * 4 3 2 29 29 H 1.09002 * 109.47152 * 269.72462 * 6 5 4 30 30 H 1.09001 * 109.46980 * 149.72562 * 6 5 4 31 31 H 1.09004 * 109.47113 * 29.72543 * 6 5 4 32 32 H 1.09003 * 109.47105 * 90.00482 * 8 7 5 33 33 H 1.09004 * 109.47155 * 210.00498 * 8 7 5 34 34 H 1.08997 * 109.47400 * 330.00215 * 8 7 5 35 35 H 1.00902 * 111.00709 * 59.99473 * 12 10 9 36 36 H 1.00900 * 111.00112 * 183.95240 * 12 10 9 37 37 H 1.09002 * 109.47290 * 295.00271 * 13 10 9 38 38 H 1.09001 * 109.47541 * 54.99498 * 13 10 9 39 39 H 0.97008 * 119.99864 * 179.97438 * 17 16 14 40 40 H 1.07998 * 119.99939 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2594 2.0737 -1.1974 5 6 2.7256 3.3749 -1.1974 6 6 2.9777 4.0850 -2.5026 7 6 2.9550 4.0270 -0.0001 8 6 3.4578 5.4477 -0.0002 9 6 2.7239 3.3758 1.1969 10 6 2.9746 4.0864 2.5019 11 1 2.6401 5.1207 2.4226 12 7 2.2332 3.4130 3.5765 13 6 4.4711 4.0574 2.8191 14 6 4.7377 4.8720 4.0586 15 1 3.9214 5.3611 4.5694 16 6 6.0237 4.9920 4.5413 17 7 6.2564 5.7033 5.6227 18 14 7.4353 4.1442 3.6591 19 1 7.9997 5.0593 2.6348 20 1 8.4910 3.7893 4.6414 21 1 6.9374 2.9102 3.0001 22 6 2.2626 2.0724 1.1969 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 2.0759 1.5658 -2.1327 29 1 4.0074 3.9136 -2.8164 30 1 2.8106 5.1542 -2.3726 31 1 2.2974 3.7006 -3.2626 32 1 2.6102 6.1331 -0.0012 33 1 4.0627 5.6191 0.8903 34 1 4.0643 5.6185 -0.8896 35 1 2.5254 2.4517 3.6701 36 1 2.3331 3.9080 4.4500 37 1 4.7872 3.0277 2.9860 38 1 5.0283 4.4772 1.9816 39 1 7.1612 5.7874 5.9625 40 1 2.0830 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:24 Heat of formation + Delta-G solvation = -24.744411 kcal Electronic energy + Delta-G solvation = -18152.825914 eV Core-core repulsion = 15544.187480 eV Total energy + Delta-G solvation = -2608.638434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96305 -37.49094 -35.81418 -34.64321 -32.39764 -31.99868 -30.46856 -28.21315 -27.19972 -26.16826 -23.81003 -23.16973 -20.82990 -20.63388 -19.04361 -17.39173 -16.93043 -16.47233 -15.78372 -15.34359 -15.26016 -14.97005 -14.87485 -14.51830 -14.20193 -14.10186 -13.68932 -13.59842 -13.50154 -13.24911 -13.06398 -12.68736 -12.61886 -12.51672 -12.37542 -12.00199 -11.87648 -11.82287 -11.64059 -11.45604 -11.10589 -10.82127 -9.64207 -9.29463 -9.11918 -8.33865 -6.37162 0.52465 0.57899 1.28653 1.30979 1.41807 2.29740 2.85264 3.01025 3.75152 3.90980 3.94304 4.07226 4.22654 4.29865 4.43893 4.51265 4.53802 4.57783 4.63473 4.73314 4.80281 4.86722 4.88749 4.92703 4.98842 5.01691 5.11359 5.14665 5.22595 5.28994 5.38664 5.42729 5.52588 5.56924 5.71656 5.80008 5.90684 6.19013 6.25807 6.37756 6.65061 6.69601 7.27757 8.81860 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.006563 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.827349 B = 4265.606333 C = 4742.633489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.078 4.078 10 C 0.147 3.853 11 H 0.067 0.933 12 N -0.832 5.832 13 C -0.027 4.027 14 C -0.523 4.523 15 H 0.043 0.957 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.939 3.061 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.258 1.258 22 C -0.123 4.123 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.335 0.665 36 H 0.343 0.657 37 H 0.009 0.991 38 H 0.018 0.982 39 H 0.266 0.734 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 -9.445 -16.612 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.092 4.092 6 C -0.166 4.166 7 C -0.108 4.108 8 C -0.178 4.178 9 C -0.078 4.078 10 C 0.035 3.965 11 H 0.085 0.915 12 N -0.360 5.360 13 C -0.065 4.065 14 C -0.561 4.561 15 H 0.062 0.938 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.182 1.182 22 C -0.141 4.141 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.705 -9.228 -16.928 21.154 hybrid contribution 1.847 0.040 0.998 2.100 sum -6.858 -9.188 -15.931 19.627 Atomic orbital electron populations 1.21706 0.94116 1.02325 1.01713 1.20542 0.96646 0.91228 1.03295 1.20121 0.99091 0.97268 0.92636 1.21084 1.01306 0.94291 0.98041 1.20020 0.99230 0.94890 0.95088 1.20827 1.02631 1.00372 0.92812 1.19778 1.01382 0.97164 0.92442 1.20933 1.01263 0.92568 1.03068 1.19908 0.98764 0.95035 0.94112 1.20021 0.91544 0.96369 0.88547 0.91532 1.59253 1.60416 1.06529 1.09823 1.20198 0.95137 0.95717 0.95490 1.21305 0.93871 1.30755 1.10156 0.93847 1.25817 1.01594 0.95500 0.95373 1.70039 1.21954 1.42138 1.24217 0.85822 0.79045 0.80026 0.78726 1.19248 1.20847 1.18211 1.20908 1.00717 0.94218 0.98285 0.93731 0.92554 0.90857 0.89729 0.91192 0.84057 0.90678 0.91048 0.90003 0.90750 0.92646 0.89960 0.85247 0.84435 0.97244 0.96355 0.92489 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.08 -1.62 6.06 29.85 0.18 -1.44 16 3 C -0.09 -2.47 5.13 -19.87 -0.10 -2.57 16 4 C -0.13 -3.27 9.36 22.27 0.21 -3.06 16 5 C -0.09 -2.51 5.88 -19.87 -0.12 -2.63 16 6 C -0.11 -2.17 9.20 71.24 0.66 -1.52 16 7 C -0.11 -3.53 5.88 -19.87 -0.12 -3.65 16 8 C -0.12 -3.78 8.40 71.24 0.60 -3.18 16 9 C -0.08 -2.83 5.09 -19.87 -0.10 -2.93 16 10 C 0.15 6.05 2.31 44.17 0.10 6.15 16 11 H 0.07 2.91 7.28 -2.39 -0.02 2.90 16 12 N -0.83 -32.02 8.67 -171.82 -1.49 -33.51 16 13 C -0.03 -1.26 3.36 29.85 0.10 -1.16 16 14 C -0.52 -29.31 9.10 25.60 0.23 -29.08 16 15 H 0.04 2.64 7.39 -2.91 -0.02 2.62 16 16 C 0.01 0.86 5.47 84.66 0.46 1.33 16 17 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 18 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 22 C -0.12 -4.02 8.91 22.27 0.20 -3.82 16 23 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.07 1.41 8.09 -2.39 -0.02 1.40 16 28 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.36 6.70 -2.39 -0.02 1.34 16 31 H 0.08 1.28 8.08 -2.38 -0.02 1.26 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 2.03 5.08 -2.39 -0.01 2.02 16 34 H 0.08 2.13 6.70 -2.39 -0.02 2.12 16 35 H 0.33 12.03 7.29 -89.69 -0.65 11.38 16 36 H 0.34 14.08 7.90 -89.69 -0.71 13.38 16 37 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 38 H 0.02 0.87 5.92 -2.39 -0.01 0.86 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.12 3.83 6.25 -2.91 -0.02 3.81 16 Total: -1.00 -64.24 313.92 3.33 -60.91 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.38 Total: 33.28 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 3.01 Total: -49.42 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -1.19 Total: -91.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -64.24 3.33 -60.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.164 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds