Wall clock time and date at job start Mon Mar 30 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47516 * 2 1 4 4 C 1.38259 * 119.99603 * 89.99929 * 3 2 1 5 5 C 1.38212 * 119.99855 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.00384 * 180.02562 * 5 4 3 7 7 C 1.38264 * 120.00048 * 0.02562 * 5 4 3 8 8 C 1.50697 * 119.99876 * 179.97438 * 7 5 4 9 9 C 1.38207 * 119.99694 * 359.97438 * 7 5 4 10 10 C 1.50703 * 119.99606 * 179.97438 * 9 7 5 11 11 H 1.08996 * 109.47343 * 324.99979 * 10 9 7 12 12 N 1.46905 * 109.47075 * 205.00138 * 10 9 7 13 13 C 1.53001 * 109.47072 * 85.00314 * 10 9 7 14 14 C 1.50703 * 109.47072 * 185.00098 * 13 10 9 15 15 H 1.07998 * 120.00155 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99920 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00383 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46968 * 60.00066 * 18 16 14 20 20 H 1.48497 * 109.47002 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47142 * 299.99724 * 18 16 14 22 22 C 1.38207 * 120.00455 * 270.28411 * 3 2 1 23 23 H 1.09004 * 109.46580 * 299.99554 * 1 2 3 24 24 H 1.09003 * 109.47184 * 59.99496 * 1 2 3 25 25 H 1.08999 * 109.46789 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47104 * 240.00474 * 2 1 3 27 27 H 1.08994 * 109.47404 * 120.00499 * 2 1 3 28 28 H 1.08000 * 120.00077 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.46721 * 270.02350 * 6 5 4 30 30 H 1.09008 * 109.46656 * 30.01805 * 6 5 4 31 31 H 1.08997 * 109.47848 * 150.02040 * 6 5 4 32 32 H 1.09001 * 109.47426 * 270.01829 * 8 7 5 33 33 H 1.09000 * 109.47442 * 30.01962 * 8 7 5 34 34 H 1.09005 * 109.46885 * 150.01947 * 8 7 5 35 35 H 1.00901 * 110.99869 * 176.04968 * 12 10 9 36 36 H 1.00896 * 110.99543 * 300.00090 * 12 10 9 37 37 H 1.08999 * 109.47045 * 304.99692 * 13 10 9 38 38 H 1.09002 * 109.47037 * 64.99916 * 13 10 9 39 39 H 0.96999 * 120.00227 * 180.02562 * 17 16 14 40 40 H 1.08008 * 119.99803 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0725 1.1974 5 6 2.7242 3.3753 1.1975 6 6 2.9759 4.0855 2.5026 7 6 2.9547 4.0271 0.0001 8 6 3.4571 5.4479 0.0002 9 6 2.7243 3.3756 -1.1968 10 6 2.9750 4.0863 -2.5019 11 1 2.7226 5.1413 -2.3955 12 7 2.1424 3.4872 -3.5535 13 6 4.4511 3.9508 -2.8810 14 6 4.7281 4.7630 -4.1199 15 1 3.9310 5.3197 -4.5901 16 6 5.9989 4.7944 -4.6536 17 7 6.9695 4.1161 -4.0815 18 14 6.3422 5.8005 -6.1897 19 1 6.0281 7.2278 -5.9269 20 1 7.7749 5.6691 -6.5576 21 1 5.4967 5.3048 -7.3054 22 6 2.2573 2.0743 -1.1968 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0832 1.5632 2.1327 29 1 2.0677 4.5994 2.8176 30 1 3.2642 3.3586 3.2620 31 1 3.7779 4.8121 2.3721 32 1 2.6094 6.1331 0.0006 33 1 4.0629 5.6190 0.8900 34 1 4.0624 5.6192 -0.8900 35 1 2.2440 3.9873 -4.4240 36 1 2.3576 2.5086 -3.6714 37 1 5.0715 4.3146 -2.0619 38 1 4.6819 2.9032 -3.0741 39 1 7.8637 4.1385 -4.4568 40 1 2.0725 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:27 Heat of formation + Delta-G solvation = -10.627299 kcal Electronic energy + Delta-G solvation = -18068.520175 eV Core-core repulsion = 15460.493905 eV Total energy + Delta-G solvation = -2608.026270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61636 -35.82868 -34.64825 -32.62806 -31.03323 -30.76264 -27.97582 -27.01679 -25.99239 -24.49281 -22.73637 -21.74981 -19.59156 -19.04542 -16.66677 -15.90403 -15.54299 -14.64688 -14.41872 -14.16417 -13.93833 -13.69398 -13.19932 -13.01173 -12.65709 -12.46847 -12.37520 -12.20351 -12.13183 -11.84083 -11.51762 -11.36900 -11.08603 -11.00626 -10.89087 -10.72381 -10.44433 -10.30027 -10.09730 -9.86399 -9.12701 -8.46624 -8.13535 -7.94974 -7.57595 -6.07576 -4.12440 1.82871 1.91109 3.27903 3.33178 3.34994 4.16895 4.39196 4.98157 5.07543 5.18354 5.27437 5.34364 5.46727 5.50455 5.52454 5.62564 5.71511 5.75534 5.78334 5.93935 6.00448 6.02036 6.10358 6.14583 6.21971 6.28630 6.32411 6.43584 6.62365 6.77143 6.79832 6.99195 7.04720 7.26202 7.48159 7.54077 7.62302 7.86942 8.09314 8.22681 8.34995 8.94339 9.52661 11.02853 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.005884 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.355850 B = 4757.470949 C = 5363.077210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.090 4.090 6 C -0.112 4.112 7 C -0.086 4.086 8 C -0.123 4.123 9 C -0.045 4.045 10 C 0.124 3.876 11 H 0.078 0.922 12 N -0.841 5.841 13 C 0.002 3.998 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.107 4.107 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.345 0.655 36 H 0.328 0.672 37 H 0.022 0.978 38 H 0.016 0.984 39 H 0.262 0.738 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -3.918 9.876 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.150 4.150 5 C -0.090 4.090 6 C -0.169 4.169 7 C -0.087 4.087 8 C -0.180 4.180 9 C -0.045 4.045 10 C 0.013 3.987 11 H 0.096 0.904 12 N -0.370 5.370 13 C -0.036 4.036 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.126 4.126 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.938 -3.757 10.325 14.815 hybrid contribution 1.325 0.285 -1.356 1.917 sum -8.613 -3.472 8.970 12.911 Atomic orbital electron populations 1.21736 0.95140 1.01079 1.02218 1.20470 0.95848 0.93201 1.02282 1.19737 1.00281 0.95788 0.93256 1.20649 1.02857 0.94543 0.96957 1.19604 1.00460 0.94447 0.94522 1.20794 1.01742 1.00135 0.94183 1.19531 1.00599 0.96599 0.91957 1.20948 1.00869 0.92552 1.03586 1.19984 0.95638 0.94030 0.94878 1.20531 0.94500 0.96667 0.86978 0.90396 1.59301 1.59081 1.06927 1.11647 1.19775 0.89716 0.97352 0.96742 1.21128 0.94844 1.29591 1.10896 0.92604 1.25008 0.96329 0.95522 0.97258 1.69964 1.01473 1.41285 1.40192 0.86659 0.77211 0.80746 0.83399 1.20189 1.21307 1.20205 1.20753 1.00159 0.94590 0.97052 0.92861 0.92378 0.92909 0.91291 0.91652 0.87121 0.91754 0.92223 0.91258 0.91840 0.91882 0.89874 0.84167 0.86009 0.95948 0.96614 0.92853 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.16 0.37 -1.23 16 2 C -0.08 -1.00 6.06 -27.88 -0.17 -1.17 16 3 C -0.09 -1.41 5.13 -104.63 -0.54 -1.95 16 4 C -0.13 -2.00 9.36 -39.58 -0.37 -2.37 16 5 C -0.09 -1.43 5.88 -104.62 -0.62 -2.04 16 6 C -0.11 -1.39 9.60 36.01 0.35 -1.04 16 7 C -0.09 -1.55 5.88 -104.62 -0.62 -2.16 16 8 C -0.12 -2.04 8.81 36.00 0.32 -1.72 16 9 C -0.04 -0.87 5.06 -104.63 -0.53 -1.39 16 10 C 0.12 2.60 2.29 -68.86 -0.16 2.44 16 11 H 0.08 1.66 6.99 -51.93 -0.36 1.30 16 12 N -0.84 -16.10 8.78 -5.65 -0.05 -16.15 16 13 C 0.00 0.06 4.35 -27.88 -0.12 -0.06 16 14 C -0.53 -14.20 8.55 -34.44 -0.29 -14.49 16 15 H 0.06 1.45 7.14 -52.49 -0.38 1.08 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -1.90 8.92 -39.59 -0.35 -2.26 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 31 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.92 5.95 -51.93 -0.31 0.61 16 34 H 0.08 1.58 5.49 -51.93 -0.28 1.29 16 35 H 0.35 6.69 7.90 -39.29 -0.31 6.38 16 36 H 0.33 6.05 7.21 -39.29 -0.28 5.76 16 37 H 0.02 0.61 7.03 -51.93 -0.36 0.24 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.03 6.29 -52.48 -0.33 1.70 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -29.36 317.62 -8.66 -38.02 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.28 Total: 10.63 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -2.83 Total: -27.85 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.69 Total: -41.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.36 -8.66 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.396 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds