Wall clock time and date at job start Mon Mar 30 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47516 * 2 1 4 4 C 1.38259 * 119.99603 * 89.99929 * 3 2 1 5 5 C 1.38212 * 119.99855 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.00384 * 180.02562 * 5 4 3 7 7 C 1.38264 * 120.00048 * 0.02562 * 5 4 3 8 8 C 1.50697 * 119.99876 * 179.97438 * 7 5 4 9 9 C 1.38207 * 119.99694 * 359.97438 * 7 5 4 10 10 C 1.50703 * 119.99606 * 179.97438 * 9 7 5 11 11 H 1.08996 * 109.47343 * 324.99979 * 10 9 7 12 12 N 1.46905 * 109.47075 * 205.00138 * 10 9 7 13 13 C 1.53001 * 109.47072 * 85.00314 * 10 9 7 14 14 C 1.50703 * 109.47072 * 185.00098 * 13 10 9 15 15 H 1.07998 * 120.00155 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99920 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00383 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46968 * 60.00066 * 18 16 14 20 20 H 1.48497 * 109.47002 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47142 * 299.99724 * 18 16 14 22 22 C 1.38207 * 120.00455 * 270.28411 * 3 2 1 23 23 H 1.09004 * 109.46580 * 299.99554 * 1 2 3 24 24 H 1.09003 * 109.47184 * 59.99496 * 1 2 3 25 25 H 1.08999 * 109.46789 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47104 * 240.00474 * 2 1 3 27 27 H 1.08994 * 109.47404 * 120.00499 * 2 1 3 28 28 H 1.08000 * 120.00077 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.46721 * 270.02350 * 6 5 4 30 30 H 1.09008 * 109.46656 * 30.01805 * 6 5 4 31 31 H 1.08997 * 109.47848 * 150.02040 * 6 5 4 32 32 H 1.09001 * 109.47426 * 270.01829 * 8 7 5 33 33 H 1.09000 * 109.47442 * 30.01962 * 8 7 5 34 34 H 1.09005 * 109.46885 * 150.01947 * 8 7 5 35 35 H 1.00901 * 110.99869 * 176.04968 * 12 10 9 36 36 H 1.00896 * 110.99543 * 300.00090 * 12 10 9 37 37 H 1.08999 * 109.47045 * 304.99692 * 13 10 9 38 38 H 1.09002 * 109.47037 * 64.99916 * 13 10 9 39 39 H 0.96999 * 120.00227 * 180.02562 * 17 16 14 40 40 H 1.08008 * 119.99803 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0725 1.1974 5 6 2.7242 3.3753 1.1975 6 6 2.9759 4.0855 2.5026 7 6 2.9547 4.0271 0.0001 8 6 3.4571 5.4479 0.0002 9 6 2.7243 3.3756 -1.1968 10 6 2.9750 4.0863 -2.5019 11 1 2.7226 5.1413 -2.3955 12 7 2.1424 3.4872 -3.5535 13 6 4.4511 3.9508 -2.8810 14 6 4.7281 4.7630 -4.1199 15 1 3.9310 5.3197 -4.5901 16 6 5.9989 4.7944 -4.6536 17 7 6.9695 4.1161 -4.0815 18 14 6.3422 5.8005 -6.1897 19 1 6.0281 7.2278 -5.9269 20 1 7.7749 5.6691 -6.5576 21 1 5.4967 5.3048 -7.3054 22 6 2.2573 2.0743 -1.1968 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0832 1.5632 2.1327 29 1 2.0677 4.5994 2.8176 30 1 3.2642 3.3586 3.2620 31 1 3.7779 4.8121 2.3721 32 1 2.6094 6.1331 0.0006 33 1 4.0629 5.6190 0.8900 34 1 4.0624 5.6192 -0.8900 35 1 2.2440 3.9873 -4.4240 36 1 2.3576 2.5086 -3.6714 37 1 5.0715 4.3146 -2.0619 38 1 4.6819 2.9032 -3.0741 39 1 7.8637 4.1385 -4.4568 40 1 2.0725 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:27 Heat of formation + Delta-G solvation = -27.096444 kcal Electronic energy + Delta-G solvation = -18069.234331 eV Core-core repulsion = 15460.493905 eV Total energy + Delta-G solvation = -2608.740426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92805 -37.42493 -35.81862 -34.64714 -32.34376 -31.96802 -29.92009 -28.21359 -27.19469 -26.27924 -23.81035 -23.50137 -20.82457 -20.55140 -18.66320 -17.34852 -16.88876 -16.63119 -15.83572 -15.32735 -15.26387 -14.85980 -14.49656 -14.47680 -14.24529 -14.01805 -13.58821 -13.51436 -13.47508 -13.30911 -12.96456 -12.74587 -12.62275 -12.44876 -12.25818 -12.19625 -11.92366 -11.75469 -11.66162 -11.43594 -11.04588 -10.61995 -9.61183 -9.26869 -9.09239 -8.22576 -6.35405 0.54539 0.59788 1.38603 1.40726 1.48596 2.37550 2.87945 3.10081 3.79804 3.91441 3.95510 4.11451 4.23258 4.28391 4.44998 4.53837 4.56066 4.59224 4.64966 4.73666 4.86172 4.87769 4.92313 4.94082 5.02727 5.09640 5.12710 5.16113 5.36174 5.38060 5.40751 5.47227 5.55980 5.70619 5.75896 5.80936 5.93608 6.13907 6.27767 6.39855 6.68517 6.80745 7.34596 8.88245 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.005884 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.355850 B = 4757.470949 C = 5363.077210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.093 4.093 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.075 4.075 10 C 0.141 3.859 11 H 0.070 0.930 12 N -0.829 5.829 13 C 0.017 3.983 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.125 4.125 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.344 0.656 36 H 0.332 0.668 37 H -0.008 1.008 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -4.143 10.955 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.150 4.150 5 C -0.093 4.093 6 C -0.166 4.166 7 C -0.110 4.110 8 C -0.174 4.174 9 C -0.076 4.076 10 C 0.029 3.971 11 H 0.088 0.912 12 N -0.358 5.358 13 C -0.021 4.021 14 C -0.575 4.575 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.144 4.144 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.010 0.990 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.173 -3.982 11.403 16.454 hybrid contribution 1.681 0.300 -1.614 2.350 sum -9.492 -3.683 9.789 14.124 Atomic orbital electron populations 1.21699 0.93888 1.02365 1.01759 1.20542 0.96828 0.91170 1.03190 1.20117 0.99131 0.97253 0.92626 1.21071 1.01550 0.94361 0.98006 1.20029 0.99231 0.94906 0.95147 1.20855 1.02601 1.00496 0.92692 1.19784 1.01437 0.97301 0.92492 1.20889 1.01112 0.92587 1.02782 1.19963 0.98081 0.95087 0.94465 1.20203 0.91536 0.96761 0.88608 0.91239 1.59296 1.58142 1.07107 1.11223 1.19590 0.92493 0.94719 0.95320 1.21516 0.95221 1.29449 1.11332 0.91763 1.25939 0.96147 0.96656 1.00661 1.70112 1.01924 1.43046 1.42060 0.85518 0.77023 0.79256 0.79352 1.19257 1.21209 1.18995 1.20863 1.01057 0.94301 0.98154 0.92470 0.93683 0.90775 0.91418 0.89741 0.83991 0.90038 0.90273 0.91230 0.90443 0.89992 0.93254 0.84360 0.85535 0.98990 0.99845 0.92851 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.08 -1.82 6.06 29.85 0.18 -1.64 16 3 C -0.09 -2.73 5.13 -19.87 -0.10 -2.83 16 4 C -0.13 -3.69 9.36 22.27 0.21 -3.48 16 5 C -0.09 -2.79 5.88 -19.86 -0.12 -2.91 16 6 C -0.11 -2.41 9.60 71.24 0.68 -1.73 16 7 C -0.11 -3.95 5.88 -19.87 -0.12 -4.06 16 8 C -0.12 -3.93 8.81 71.24 0.63 -3.30 16 9 C -0.08 -3.00 5.06 -19.87 -0.10 -3.10 16 10 C 0.14 6.10 2.29 44.17 0.10 6.21 16 11 H 0.07 3.09 6.99 -2.39 -0.02 3.07 16 12 N -0.83 -32.56 8.78 -171.79 -1.51 -34.06 16 13 C 0.02 0.92 4.35 29.85 0.13 1.05 16 14 C -0.54 -29.76 8.55 25.60 0.22 -29.54 16 15 H 0.06 3.37 7.14 -2.91 -0.02 3.35 16 16 C 0.00 0.24 5.46 84.65 0.46 0.70 16 17 N -0.93 -56.72 13.29 21.44 0.28 -56.44 16 18 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.13 -4.50 8.92 22.27 0.20 -4.30 16 23 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.55 8.09 -2.38 -0.02 1.53 16 27 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 28 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.08 1.43 8.09 -2.38 -0.02 1.42 16 31 H 0.07 1.52 5.95 -2.39 -0.01 1.51 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.35 5.95 -2.39 -0.01 2.33 16 34 H 0.05 1.97 5.49 -2.38 -0.01 1.95 16 35 H 0.34 13.53 7.90 -89.69 -0.71 12.82 16 36 H 0.33 12.64 7.21 -89.70 -0.65 11.99 16 37 H -0.01 -0.48 7.03 -2.39 -0.02 -0.50 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.12 4.08 6.29 -2.91 -0.02 4.06 16 Total: -1.00 -64.76 317.62 3.57 -61.18 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.32 Total: 34.44 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 3.09 Total: -50.98 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -1.22 Total: -90.50 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.76 3.57 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.088 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds