Wall clock time and date at job start Mon Mar 30 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47085 * 2 1 4 4 C 1.38261 * 119.99947 * 89.99860 * 3 2 1 5 5 C 1.38217 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00016 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47445 * 266.53361 * 7 6 5 9 9 C 1.38212 * 119.99683 * 359.95385 * 6 5 4 10 10 C 1.50700 * 120.00048 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.47044 * 318.27582 * 10 9 6 12 12 N 1.46904 * 109.46824 * 78.27452 * 10 9 6 13 13 C 1.53001 * 109.47276 * 198.27220 * 10 9 6 14 14 C 1.50702 * 109.46757 * 174.61873 * 13 10 9 15 15 H 1.08002 * 120.00195 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99585 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99712 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46894 * 89.99981 * 18 16 14 20 20 H 1.48491 * 109.47263 * 210.00196 * 18 16 14 21 21 H 1.48507 * 109.46976 * 330.00452 * 18 16 14 22 22 C 1.38212 * 120.00385 * 270.20851 * 3 2 1 23 23 H 1.08991 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47166 * 300.00226 * 1 2 3 25 25 H 1.09003 * 109.46660 * 60.00088 * 1 2 3 26 26 H 1.08995 * 109.47298 * 239.99523 * 2 1 3 27 27 H 1.09002 * 109.47076 * 119.99575 * 2 1 3 28 28 H 1.07996 * 120.00311 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.99843 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47101 * 26.53455 * 7 6 5 31 31 H 1.09006 * 109.46906 * 146.53332 * 7 6 5 32 32 H 1.09001 * 109.47703 * 183.30919 * 8 7 6 33 33 H 1.09013 * 109.47223 * 303.30713 * 8 7 6 34 34 H 1.09002 * 109.47094 * 63.30057 * 8 7 6 35 35 H 1.00901 * 110.99542 * 305.48247 * 12 10 9 36 36 H 1.00897 * 110.99818 * 69.43456 * 12 10 9 37 37 H 1.08997 * 109.47040 * 294.62085 * 13 10 9 38 38 H 1.08997 * 109.46678 * 54.62326 * 13 10 9 39 39 H 0.96996 * 119.99500 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.99579 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1974 5 6 2.7229 3.3759 1.1973 6 6 2.9524 4.0280 0.0000 7 6 3.4536 5.4492 0.0000 8 6 2.2654 6.4091 -0.0866 9 6 2.7225 3.3763 -1.1969 10 6 2.9720 4.0872 -2.5021 11 1 2.6076 5.1122 -2.4329 12 7 4.4133 4.0980 -2.7860 13 6 2.2358 3.3591 -3.6284 14 6 2.3759 4.1420 -4.9084 15 1 2.9345 5.0663 -4.9177 16 6 1.7908 3.6784 -6.0676 17 7 1.9135 4.3614 -7.1849 18 14 0.8251 2.0794 -6.0517 19 1 -0.5989 2.3642 -5.7413 20 1 0.9211 1.4299 -7.3836 21 1 1.3855 1.1730 -5.0174 22 6 2.2586 2.0739 -1.1969 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0831 1.5634 2.1327 29 1 2.9025 3.8852 2.1327 30 1 4.0078 5.6390 0.9193 31 1 4.1086 5.6034 -0.8576 32 1 2.6302 7.4345 -0.1458 33 1 1.6778 6.1806 -0.9758 34 1 1.6416 6.2959 0.8001 35 1 4.9306 4.4937 -2.0154 36 1 4.7453 3.1710 -3.0064 37 1 2.6654 2.3662 -3.7609 38 1 1.1803 3.2671 -3.3724 39 1 1.5022 4.0350 -8.0004 40 1 2.0750 1.5660 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:30 Heat of formation + Delta-G solvation = -3.341153 kcal Electronic energy + Delta-G solvation = -18239.941316 eV Core-core repulsion = 15632.230997 eV Total energy + Delta-G solvation = -2607.710319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81595 -36.04415 -34.57227 -32.32867 -32.26124 -30.09367 -28.73505 -28.31567 -24.66657 -23.97500 -22.46326 -22.09558 -19.96605 -19.29321 -16.75422 -16.03405 -15.72603 -14.98675 -14.69772 -14.23099 -13.90013 -13.84853 -13.63687 -13.25827 -13.12361 -12.96626 -12.45266 -12.44693 -12.29266 -11.43829 -11.36703 -11.33519 -11.26802 -11.08845 -10.81841 -10.71356 -10.50726 -10.39853 -9.73968 -9.67901 -9.07913 -8.56155 -8.44800 -8.25630 -7.83474 -5.93613 -3.88621 1.56349 1.66419 3.33345 3.41147 3.41930 3.94343 4.51260 4.84301 4.91743 5.03698 5.13586 5.20381 5.29404 5.38889 5.39406 5.47284 5.53486 5.57210 5.64989 5.76490 5.77362 5.89406 5.97835 6.04223 6.06987 6.16078 6.20731 6.32476 6.38840 6.45718 6.63755 6.70206 6.83809 7.02124 7.08719 7.30175 7.35015 7.80670 7.97141 8.14447 8.68829 9.19447 9.68782 11.20238 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.008258 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.971368 B = 3389.913269 C = 4612.666798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.121 4.121 6 C -0.085 4.085 7 C -0.088 4.088 8 C -0.147 4.147 9 C -0.105 4.105 10 C 0.140 3.860 11 H 0.086 0.914 12 N -0.815 5.815 13 C -0.007 4.007 14 C -0.496 4.496 15 H 0.081 0.919 16 C 0.063 3.937 17 N -0.905 5.905 18 Si 0.872 3.128 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.269 1.269 22 C -0.106 4.106 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.321 0.679 36 H 0.336 0.664 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -4.767 17.913 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.139 4.139 6 C -0.085 4.085 7 C -0.125 4.125 8 C -0.204 4.204 9 C -0.107 4.107 10 C 0.029 3.971 11 H 0.104 0.896 12 N -0.343 5.343 13 C -0.044 4.044 14 C -0.534 4.534 15 H 0.099 0.901 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.700 3.300 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.124 4.124 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.354 -4.268 17.075 17.604 hybrid contribution -0.562 -1.575 0.784 1.847 sum -0.209 -5.844 17.859 18.792 Atomic orbital electron populations 1.21749 0.94919 1.01401 1.02338 1.20509 0.96126 0.93021 1.02402 1.19879 0.99891 0.96104 0.93305 1.20859 1.01465 0.95058 0.97046 1.20912 1.00980 0.94835 0.97148 1.19799 1.00246 0.95836 0.92665 1.20593 0.98290 0.91143 1.02517 1.21741 0.97968 0.98397 1.02294 1.21217 0.97724 0.94771 0.97004 1.20503 0.88860 0.99041 0.88712 0.89649 1.59015 1.02873 1.28341 1.44032 1.19707 0.94467 0.95875 0.94342 1.21064 1.32271 1.09089 0.90992 0.90122 1.25016 0.96316 0.96688 0.95700 1.69913 1.45694 1.39050 0.99875 0.86906 0.80838 0.85001 0.77217 1.20499 1.21523 1.19350 1.21214 0.98726 0.94768 0.97700 0.92654 0.92736 0.92300 0.91167 0.91490 0.86883 0.86768 0.91692 0.90294 0.92490 0.91784 0.93070 0.86606 0.85173 0.96648 0.96646 0.92991 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.08 -1.00 6.06 -27.88 -0.17 -1.17 16 3 C -0.09 -1.32 5.13 -104.62 -0.54 -1.86 16 4 C -0.13 -1.67 9.70 -39.58 -0.38 -2.05 16 5 C -0.12 -1.61 9.69 -39.58 -0.38 -2.00 16 6 C -0.08 -1.26 5.09 -104.63 -0.53 -1.79 16 7 C -0.09 -1.14 5.37 -27.89 -0.15 -1.29 16 8 C -0.15 -1.88 9.74 37.15 0.36 -1.52 16 9 C -0.10 -1.79 5.30 -104.62 -0.55 -2.35 16 10 C 0.14 2.75 2.21 -68.86 -0.15 2.60 16 11 H 0.09 1.76 6.11 -51.93 -0.32 1.45 16 12 N -0.82 -15.11 9.00 -5.65 -0.05 -15.16 16 13 C -0.01 -0.15 2.37 -27.88 -0.07 -0.22 16 14 C -0.50 -14.13 9.40 -34.44 -0.32 -14.46 16 15 H 0.08 2.52 7.99 -52.49 -0.42 2.10 16 16 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 17 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 18 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 C -0.11 -1.78 8.71 -39.58 -0.34 -2.13 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 30 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.08 1.08 5.27 -51.93 -0.27 0.81 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.95 6.93 -51.92 -0.36 0.59 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.32 5.05 6.95 -39.29 -0.27 4.77 16 36 H 0.34 6.10 8.90 -39.29 -0.35 5.75 16 37 H 0.02 0.37 6.13 -51.93 -0.32 0.05 16 38 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.13 2.30 6.11 -52.48 -0.32 1.97 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -30.90 316.52 -8.54 -39.44 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.40 Total: 9.06 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -2.97 Total: -27.79 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.72 Total: -42.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.90 -8.54 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.100 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds