Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47085 * 2 1 4 4 C 1.38261 * 119.99947 * 89.99860 * 3 2 1 5 5 C 1.38217 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00016 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47445 * 266.53361 * 7 6 5 9 9 C 1.38212 * 119.99683 * 359.95385 * 6 5 4 10 10 C 1.50700 * 120.00048 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.47044 * 318.27582 * 10 9 6 12 12 N 1.46904 * 109.46824 * 78.27452 * 10 9 6 13 13 C 1.53001 * 109.47276 * 198.27220 * 10 9 6 14 14 C 1.50702 * 109.46757 * 174.61873 * 13 10 9 15 15 H 1.08002 * 120.00195 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99585 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99712 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46894 * 89.99981 * 18 16 14 20 20 H 1.48491 * 109.47263 * 210.00196 * 18 16 14 21 21 H 1.48507 * 109.46976 * 330.00452 * 18 16 14 22 22 C 1.38212 * 120.00385 * 270.20851 * 3 2 1 23 23 H 1.08991 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47166 * 300.00226 * 1 2 3 25 25 H 1.09003 * 109.46660 * 60.00088 * 1 2 3 26 26 H 1.08995 * 109.47298 * 239.99523 * 2 1 3 27 27 H 1.09002 * 109.47076 * 119.99575 * 2 1 3 28 28 H 1.07996 * 120.00311 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.99843 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47101 * 26.53455 * 7 6 5 31 31 H 1.09006 * 109.46906 * 146.53332 * 7 6 5 32 32 H 1.09001 * 109.47703 * 183.30919 * 8 7 6 33 33 H 1.09013 * 109.47223 * 303.30713 * 8 7 6 34 34 H 1.09002 * 109.47094 * 63.30057 * 8 7 6 35 35 H 1.00901 * 110.99542 * 305.48247 * 12 10 9 36 36 H 1.00897 * 110.99818 * 69.43456 * 12 10 9 37 37 H 1.08997 * 109.47040 * 294.62085 * 13 10 9 38 38 H 1.08997 * 109.46678 * 54.62326 * 13 10 9 39 39 H 0.96996 * 119.99500 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.99579 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1974 5 6 2.7229 3.3759 1.1973 6 6 2.9524 4.0280 0.0000 7 6 3.4536 5.4492 0.0000 8 6 2.2654 6.4091 -0.0866 9 6 2.7225 3.3763 -1.1969 10 6 2.9720 4.0872 -2.5021 11 1 2.6076 5.1122 -2.4329 12 7 4.4133 4.0980 -2.7860 13 6 2.2358 3.3591 -3.6284 14 6 2.3759 4.1420 -4.9084 15 1 2.9345 5.0663 -4.9177 16 6 1.7908 3.6784 -6.0676 17 7 1.9135 4.3614 -7.1849 18 14 0.8251 2.0794 -6.0517 19 1 -0.5989 2.3642 -5.7413 20 1 0.9211 1.4299 -7.3836 21 1 1.3855 1.1730 -5.0174 22 6 2.2586 2.0739 -1.1969 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0831 1.5634 2.1327 29 1 2.9025 3.8852 2.1327 30 1 4.0078 5.6390 0.9193 31 1 4.1086 5.6034 -0.8576 32 1 2.6302 7.4345 -0.1458 33 1 1.6778 6.1806 -0.9758 34 1 1.6416 6.2959 0.8001 35 1 4.9306 4.4937 -2.0154 36 1 4.7453 3.1710 -3.0064 37 1 2.6654 2.3662 -3.7609 38 1 1.1803 3.2671 -3.3724 39 1 1.5022 4.0350 -8.0004 40 1 2.0750 1.5660 -2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = -22.073714 kcal Electronic energy + Delta-G solvation = -18240.753621 eV Core-core repulsion = 15632.230997 eV Total energy + Delta-G solvation = -2608.522624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99998 -37.39052 -35.86237 -34.40655 -33.28374 -31.36296 -30.65126 -29.36264 -26.21354 -25.12778 -24.01388 -23.08967 -21.34803 -20.68505 -18.82607 -17.43451 -16.91187 -16.28249 -16.17200 -15.86839 -15.38514 -14.89462 -14.75103 -14.62298 -14.45465 -14.29311 -14.09305 -13.43669 -13.39316 -13.35268 -12.94394 -12.46286 -12.40943 -12.27569 -12.20079 -11.88873 -11.83646 -11.75028 -11.60144 -11.47283 -11.11612 -10.73626 -9.78765 -9.43576 -9.18360 -8.22717 -6.23002 0.44848 0.51726 1.32582 1.33864 1.44691 2.36862 2.81667 3.10759 3.80574 3.86318 3.91132 3.97679 4.07729 4.17807 4.32622 4.39429 4.49766 4.52655 4.56699 4.69394 4.70452 4.78440 4.82235 5.00251 5.04053 5.04846 5.08710 5.15372 5.23715 5.29381 5.34189 5.38315 5.50320 5.61362 5.65181 5.78079 5.84554 6.18585 6.33670 6.47668 6.75040 6.86574 7.38307 8.94539 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.008258 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.971368 B = 3389.913269 C = 4612.666798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.087 4.087 8 C -0.145 4.145 9 C -0.122 4.122 10 C 0.151 3.849 11 H 0.068 0.932 12 N -0.827 5.827 13 C 0.003 3.997 14 C -0.500 4.500 15 H 0.037 0.963 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.250 1.250 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.338 0.662 36 H 0.337 0.663 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.263 0.737 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -6.465 21.237 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.090 4.090 7 C -0.124 4.124 8 C -0.202 4.202 9 C -0.124 4.124 10 C 0.040 3.960 11 H 0.086 0.914 12 N -0.357 5.357 13 C -0.035 4.035 14 C -0.538 4.538 15 H 0.056 0.944 16 C -0.195 4.195 17 N -0.596 5.596 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.173 1.173 22 C -0.147 4.147 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.004 -5.964 20.427 21.280 hybrid contribution -0.403 -0.965 -0.205 1.065 sum -0.408 -6.928 20.222 21.380 Atomic orbital electron populations 1.21738 0.94446 1.02421 1.01620 1.20571 0.96459 0.91678 1.03334 1.20135 0.99249 0.97218 0.92814 1.21257 0.99808 0.95030 0.97735 1.21277 0.99571 0.94969 0.97583 1.19959 1.00105 0.96539 0.92406 1.20620 0.98214 0.90226 1.03348 1.21720 0.97873 0.99152 1.01453 1.20879 1.00089 0.95153 0.96318 1.20098 0.88886 0.97846 0.89131 0.91437 1.58924 1.02740 1.28647 1.45381 1.19563 0.94881 0.95551 0.93470 1.21307 1.31126 1.08048 0.93330 0.94434 1.25938 0.97651 1.00749 0.95170 1.70075 1.47373 1.41348 1.00766 0.85784 0.79396 0.80409 0.77785 1.19568 1.21084 1.17322 1.21148 1.00490 0.94969 0.98119 0.90813 0.91984 0.94457 0.91800 0.89011 0.83654 0.83628 0.88844 0.91653 0.91235 0.94775 0.91670 0.84717 0.85024 0.96427 0.96918 0.92847 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.89 71.98 0.71 -2.21 16 2 C -0.08 -1.77 6.06 29.85 0.18 -1.59 16 3 C -0.09 -2.49 5.13 -19.87 -0.10 -2.59 16 4 C -0.12 -2.69 9.70 22.27 0.22 -2.48 16 5 C -0.12 -2.66 9.69 22.27 0.22 -2.44 16 6 C -0.09 -2.48 5.09 -19.87 -0.10 -2.58 16 7 C -0.09 -2.10 5.37 29.84 0.16 -1.94 16 8 C -0.14 -3.55 9.74 71.98 0.70 -2.85 16 9 C -0.12 -4.14 5.30 -19.87 -0.11 -4.24 16 10 C 0.15 6.13 2.21 44.17 0.10 6.23 16 11 H 0.07 2.94 6.11 -2.39 -0.01 2.92 16 12 N -0.83 -31.50 9.00 -171.79 -1.55 -33.05 16 13 C 0.00 0.14 2.37 29.85 0.07 0.21 16 14 C -0.50 -29.70 9.40 25.60 0.24 -29.46 16 15 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 16 C 0.00 0.03 5.47 84.65 0.46 0.49 16 17 N -0.95 -61.77 13.96 21.45 0.30 -61.47 16 18 Si 0.94 45.86 27.47 68.60 1.88 47.74 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 22 C -0.13 -4.26 8.71 22.27 0.19 -4.07 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 27 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 28 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.09 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.06 1.75 5.27 -2.38 -0.01 1.74 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.02 6.93 -2.38 -0.02 1.01 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.34 10.72 6.95 -89.69 -0.62 10.10 16 36 H 0.34 12.53 8.90 -89.70 -0.80 11.74 16 37 H 0.02 0.84 6.13 -2.39 -0.01 0.83 16 38 H 0.01 0.62 7.44 -2.39 -0.02 0.60 16 39 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.11 3.86 6.11 -2.91 -0.02 3.84 16 Total: -1.00 -69.23 316.52 3.14 -66.09 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.45 Total: 30.21 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 2.94 Total: -49.52 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.25 Total: -94.52 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -69.23 3.14 -66.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.017 kcal (2) G-P(sol) polarization free energy of solvation -69.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds