Wall clock time and date at job start Mon Mar 30 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46835 * 2 1 4 4 C 1.38261 * 120.00000 * 270.02018 * 3 2 1 5 5 C 1.38208 * 120.00086 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99599 * 359.75275 * 5 4 3 7 7 C 1.50698 * 119.99919 * 180.27575 * 6 5 4 8 8 C 1.53000 * 109.47072 * 265.22770 * 7 6 5 9 9 C 1.38212 * 120.00037 * 0.49894 * 6 5 4 10 10 C 1.50707 * 119.99881 * 179.76732 * 9 6 5 11 11 H 1.09000 * 109.47028 * 324.73376 * 10 9 6 12 12 N 1.46897 * 109.47119 * 204.72899 * 10 9 6 13 13 C 1.53004 * 109.46792 * 84.73239 * 10 9 6 14 14 C 1.50695 * 109.46637 * 185.00046 * 13 10 9 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 10 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47093 * 60.00328 * 18 16 14 20 20 H 1.48495 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47239 * 300.00048 * 18 16 14 22 22 C 1.38216 * 119.99733 * 90.00060 * 3 2 1 23 23 H 1.08992 * 109.47219 * 60.00281 * 1 2 3 24 24 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47146 * 299.99578 * 1 2 3 26 26 H 1.08999 * 109.47010 * 239.99898 * 2 1 3 27 27 H 1.08999 * 109.46909 * 119.99923 * 2 1 3 28 28 H 1.08002 * 119.99691 * 0.02562 * 4 3 2 29 29 H 1.07990 * 120.00248 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.47471 * 25.22474 * 7 6 5 31 31 H 1.09002 * 109.47668 * 145.22565 * 7 6 5 32 32 H 1.09004 * 109.47158 * 59.99943 * 8 7 6 33 33 H 1.09002 * 109.47596 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47022 * 299.99946 * 8 7 6 35 35 H 1.00899 * 111.00276 * 176.04238 * 12 10 9 36 36 H 1.00903 * 111.00282 * 300.00831 * 12 10 9 37 37 H 1.08992 * 109.47421 * 65.00092 * 13 10 9 38 38 H 1.08997 * 109.46955 * 304.99545 * 13 10 9 39 39 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.00210 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7224 3.3760 -1.1974 6 6 2.9478 4.0295 0.0000 7 6 3.4436 5.4526 0.0001 8 6 4.9687 5.4614 0.1226 9 6 2.7229 3.3761 1.1970 10 6 2.9736 4.0867 2.5021 11 1 3.8326 4.7492 2.3959 12 7 3.2449 3.0977 3.5539 13 6 1.7396 4.9082 2.8807 14 6 2.0336 5.7142 4.1196 15 1 3.0050 5.6507 4.5874 16 6 1.0644 6.5377 4.6524 17 7 -0.1167 6.6193 4.0796 18 14 1.4286 7.5363 6.1885 19 1 2.5703 8.4489 5.9265 20 1 0.2310 8.3337 6.5559 21 1 1.7737 6.6195 7.3046 22 6 2.2626 2.0724 1.1970 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0816 1.5638 -2.1327 29 1 2.9017 3.8854 -2.1326 30 1 3.1512 5.9394 -0.9304 31 1 3.0083 5.9891 0.8431 32 1 5.4041 4.9249 -0.7205 33 1 5.3274 6.4907 0.1222 34 1 5.2612 4.9747 1.0531 35 1 3.4796 3.5507 4.4244 36 1 2.4628 2.4711 3.6715 37 1 0.9020 4.2380 3.0735 38 1 1.4856 5.5808 2.0614 39 1 -0.7985 7.1983 4.4547 40 1 2.0831 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:32 Heat of formation + Delta-G solvation = -12.034779 kcal Electronic energy + Delta-G solvation = -18155.661747 eV Core-core repulsion = 15547.574444 eV Total energy + Delta-G solvation = -2608.087303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53830 -35.87736 -34.46545 -32.51631 -32.07055 -29.75136 -28.35726 -27.84188 -24.62135 -24.09204 -22.15173 -21.90819 -20.32457 -19.06024 -16.64856 -15.81285 -15.63150 -14.64901 -14.60437 -14.38972 -13.87056 -13.52383 -13.18565 -12.98444 -12.87634 -12.71991 -12.42234 -12.16831 -11.88601 -11.78143 -11.18351 -11.13925 -11.10279 -10.95890 -10.80924 -10.70112 -10.44355 -10.23675 -9.98943 -9.86630 -9.12741 -8.46956 -8.26522 -8.04637 -7.58134 -6.07918 -4.12639 1.82225 1.92985 3.27656 3.32978 3.34770 4.20012 4.39060 5.01323 5.09490 5.22871 5.27379 5.36646 5.40616 5.51537 5.55720 5.60704 5.71493 5.79062 5.90891 5.94641 5.95456 6.10482 6.13567 6.26983 6.27866 6.32457 6.40774 6.51686 6.64822 6.72982 6.79413 6.95172 7.04259 7.26000 7.47594 7.52369 7.61556 7.86570 8.08918 8.22328 8.34611 8.94043 9.52391 11.02485 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.006419 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.098334 B = 4361.308904 C = 5013.397784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.082 4.082 7 C -0.093 4.093 8 C -0.143 4.143 9 C -0.045 4.045 10 C 0.122 3.878 11 H 0.081 0.919 12 N -0.841 5.841 13 C 0.003 3.997 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.104 4.104 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.345 0.655 36 H 0.328 0.672 37 H 0.015 0.985 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -8.552 -8.815 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.130 4.130 8 C -0.200 4.200 9 C -0.046 4.046 10 C 0.011 3.989 11 H 0.099 0.901 12 N -0.370 5.370 13 C -0.036 4.036 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.122 4.122 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.005 -8.696 -9.262 13.655 hybrid contribution -0.868 1.102 1.276 1.896 sum 4.137 -7.594 -7.986 11.772 Atomic orbital electron populations 1.21750 0.95070 1.01132 1.02426 1.20473 0.95935 0.93166 1.02169 1.19773 1.00276 0.95962 0.93321 1.20784 1.02293 0.95142 0.96938 1.20867 1.00945 0.94837 0.97071 1.19677 0.99949 0.96145 0.92484 1.20631 0.96014 0.93118 1.03241 1.21717 0.95203 1.01209 1.01876 1.20000 0.95927 0.93671 0.94978 1.20590 0.99761 0.91626 0.86946 0.90072 1.59298 1.43994 1.22028 1.11654 1.19771 0.92085 0.94978 0.96717 1.21126 0.98777 1.25539 1.10985 0.92611 1.25012 0.95065 0.96799 0.97254 1.69964 1.04128 1.38638 1.40155 0.86662 0.77688 0.80273 0.83411 1.20182 1.21314 1.20211 1.20780 0.99740 0.94587 0.97075 0.92752 0.92870 0.92320 0.91687 0.91329 0.87100 0.86872 0.91870 0.89279 0.93312 0.92762 0.92197 0.84166 0.86036 0.96653 0.96000 0.92860 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 37.16 0.37 -1.34 16 2 C -0.08 -0.98 6.06 -27.88 -0.17 -1.15 16 3 C -0.09 -1.43 5.13 -104.62 -0.54 -1.97 16 4 C -0.13 -1.98 9.70 -39.58 -0.38 -2.37 16 5 C -0.12 -1.86 9.68 -39.58 -0.38 -2.24 16 6 C -0.08 -1.45 5.13 -104.62 -0.54 -1.98 16 7 C -0.09 -1.53 5.38 -27.88 -0.15 -1.68 16 8 C -0.14 -2.08 9.72 37.16 0.36 -1.72 16 9 C -0.05 -0.86 5.06 -104.62 -0.53 -1.39 16 10 C 0.12 2.51 2.31 -68.86 -0.16 2.35 16 11 H 0.08 1.71 5.63 -51.93 -0.29 1.41 16 12 N -0.84 -15.95 8.79 -5.65 -0.05 -16.00 16 13 C 0.00 0.07 4.37 -27.88 -0.12 -0.05 16 14 C -0.53 -14.13 8.54 -34.44 -0.29 -14.42 16 15 H 0.06 1.44 7.16 -52.48 -0.38 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.10 -1.81 8.92 -39.58 -0.35 -2.17 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.09 1.71 5.66 -51.93 -0.29 1.42 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.94 6.79 -51.93 -0.35 0.58 16 35 H 0.35 6.64 7.91 -39.29 -0.31 6.33 16 36 H 0.33 5.99 7.21 -39.29 -0.28 5.70 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.59 6.89 -51.93 -0.36 0.23 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.01 6.29 -52.49 -0.33 1.68 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -28.96 319.35 -8.88 -37.84 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.37 Total: 11.26 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -2.99 Total: -28.55 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.69 Total: -41.50 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.96 -8.88 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.808 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds