Wall clock time and date at job start Mon Mar 30 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46835 * 2 1 4 4 C 1.38261 * 120.00000 * 270.02018 * 3 2 1 5 5 C 1.38208 * 120.00086 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99599 * 359.75275 * 5 4 3 7 7 C 1.50698 * 119.99919 * 180.27575 * 6 5 4 8 8 C 1.53000 * 109.47072 * 265.22770 * 7 6 5 9 9 C 1.38212 * 120.00037 * 0.49894 * 6 5 4 10 10 C 1.50707 * 119.99881 * 179.76732 * 9 6 5 11 11 H 1.09000 * 109.47028 * 324.73376 * 10 9 6 12 12 N 1.46897 * 109.47119 * 204.72899 * 10 9 6 13 13 C 1.53004 * 109.46792 * 84.73239 * 10 9 6 14 14 C 1.50695 * 109.46637 * 185.00046 * 13 10 9 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 10 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47093 * 60.00328 * 18 16 14 20 20 H 1.48495 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47239 * 300.00048 * 18 16 14 22 22 C 1.38216 * 119.99733 * 90.00060 * 3 2 1 23 23 H 1.08992 * 109.47219 * 60.00281 * 1 2 3 24 24 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47146 * 299.99578 * 1 2 3 26 26 H 1.08999 * 109.47010 * 239.99898 * 2 1 3 27 27 H 1.08999 * 109.46909 * 119.99923 * 2 1 3 28 28 H 1.08002 * 119.99691 * 0.02562 * 4 3 2 29 29 H 1.07990 * 120.00248 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.47471 * 25.22474 * 7 6 5 31 31 H 1.09002 * 109.47668 * 145.22565 * 7 6 5 32 32 H 1.09004 * 109.47158 * 59.99943 * 8 7 6 33 33 H 1.09002 * 109.47596 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47022 * 299.99946 * 8 7 6 35 35 H 1.00899 * 111.00276 * 176.04238 * 12 10 9 36 36 H 1.00903 * 111.00282 * 300.00831 * 12 10 9 37 37 H 1.08992 * 109.47421 * 65.00092 * 13 10 9 38 38 H 1.08997 * 109.46955 * 304.99545 * 13 10 9 39 39 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.00210 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7224 3.3760 -1.1974 6 6 2.9478 4.0295 0.0000 7 6 3.4436 5.4526 0.0001 8 6 4.9687 5.4614 0.1226 9 6 2.7229 3.3761 1.1970 10 6 2.9736 4.0867 2.5021 11 1 3.8326 4.7492 2.3959 12 7 3.2449 3.0977 3.5539 13 6 1.7396 4.9082 2.8807 14 6 2.0336 5.7142 4.1196 15 1 3.0050 5.6507 4.5874 16 6 1.0644 6.5377 4.6524 17 7 -0.1167 6.6193 4.0796 18 14 1.4286 7.5363 6.1885 19 1 2.5703 8.4489 5.9265 20 1 0.2310 8.3337 6.5559 21 1 1.7737 6.6195 7.3046 22 6 2.2626 2.0724 1.1970 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0816 1.5638 -2.1327 29 1 2.9017 3.8854 -2.1326 30 1 3.1512 5.9394 -0.9304 31 1 3.0083 5.9891 0.8431 32 1 5.4041 4.9249 -0.7205 33 1 5.3274 6.4907 0.1222 34 1 5.2612 4.9747 1.0531 35 1 3.4796 3.5507 4.4244 36 1 2.4628 2.4711 3.6715 37 1 0.9020 4.2380 3.0735 38 1 1.4856 5.5808 2.0614 39 1 -0.7985 7.1983 4.4547 40 1 2.0831 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:32 Heat of formation + Delta-G solvation = -28.014670 kcal Electronic energy + Delta-G solvation = -18156.354687 eV Core-core repulsion = 15547.574444 eV Total energy + Delta-G solvation = -2608.780243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85660 -37.37870 -35.82661 -34.52569 -33.20284 -31.13269 -30.01763 -29.30294 -26.40300 -25.24191 -23.82650 -23.03363 -21.76155 -20.50140 -18.63461 -17.28890 -16.92364 -16.63024 -15.95940 -15.69580 -15.07481 -14.82942 -14.66534 -14.36482 -14.18121 -13.99412 -13.95941 -13.88433 -13.48032 -13.01491 -12.85295 -12.71280 -12.41177 -12.28251 -12.22617 -12.12210 -11.87776 -11.71773 -11.62384 -11.38888 -11.01181 -10.61259 -9.66436 -9.43075 -9.09601 -8.22428 -6.34994 0.55192 0.63008 1.38460 1.40466 1.48324 2.37540 2.92255 3.10217 3.82398 3.91376 3.99354 4.10778 4.17124 4.22920 4.43148 4.47936 4.55476 4.59349 4.66226 4.75760 4.79314 4.85469 4.90211 5.05314 5.07437 5.10006 5.14658 5.27959 5.34024 5.37360 5.40935 5.46438 5.54433 5.66587 5.74898 5.82328 5.94591 6.14339 6.26347 6.41002 6.69177 6.81188 7.34838 8.88302 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.006419 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.098334 B = 4361.308904 C = 5013.397784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.095 4.095 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.099 4.099 7 C -0.091 4.091 8 C -0.136 4.136 9 C -0.076 4.076 10 C 0.138 3.862 11 H 0.074 0.926 12 N -0.830 5.830 13 C 0.018 3.982 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.120 4.120 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.343 0.657 36 H 0.332 0.668 37 H -0.018 1.018 38 H -0.009 1.009 39 H 0.262 0.738 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -9.529 -9.853 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.095 4.095 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.128 4.128 8 C -0.193 4.193 9 C -0.077 4.077 10 C 0.027 3.973 11 H 0.092 0.908 12 N -0.358 5.358 13 C -0.021 4.021 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.001 0.999 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.966 -9.689 -10.297 15.346 hybrid contribution -1.189 1.353 1.522 2.358 sum 4.778 -8.336 -8.775 13.012 Atomic orbital electron populations 1.21735 0.94679 1.02354 1.01422 1.20535 0.96127 0.91278 1.03560 1.20146 0.99239 0.97460 0.92685 1.21216 1.00562 0.94863 0.98047 1.21201 1.00088 0.95347 0.97229 1.19892 1.00541 0.96608 0.92926 1.20592 0.97188 0.92567 1.02483 1.21663 0.93760 1.02146 1.01722 1.19959 0.98488 0.94692 0.94532 1.20263 0.97023 0.91475 0.88569 0.90802 1.59297 1.43912 1.21352 1.11233 1.19590 0.93097 0.94155 0.95257 1.21515 0.99036 1.25461 1.11425 0.91795 1.25939 0.94785 0.98067 1.00640 1.70112 1.05260 1.39711 1.42009 0.85531 0.77575 0.78718 0.79404 1.19250 1.21237 1.19009 1.20904 1.00375 0.94335 0.98204 0.92700 0.90564 0.94385 0.89277 0.90976 0.83749 0.84162 0.90081 0.92989 0.91482 0.91465 0.93868 0.84402 0.85585 0.99935 0.99068 0.92880 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.08 -1.71 6.06 29.85 0.18 -1.53 16 3 C -0.10 -2.77 5.13 -19.86 -0.10 -2.87 16 4 C -0.13 -3.47 9.70 22.27 0.22 -3.25 16 5 C -0.12 -3.52 9.68 22.27 0.22 -3.31 16 6 C -0.10 -3.48 5.13 -19.87 -0.10 -3.58 16 7 C -0.09 -3.03 5.38 29.85 0.16 -2.87 16 8 C -0.14 -3.87 9.72 71.98 0.70 -3.17 16 9 C -0.08 -2.97 5.06 -19.86 -0.10 -3.07 16 10 C 0.14 5.93 2.31 44.17 0.10 6.03 16 11 H 0.07 3.24 5.63 -2.39 -0.01 3.23 16 12 N -0.83 -32.26 8.79 -171.79 -1.51 -33.77 16 13 C 0.02 0.93 4.37 29.85 0.13 1.06 16 14 C -0.54 -29.64 8.54 25.60 0.22 -29.42 16 15 H 0.06 3.35 7.16 -2.91 -0.02 3.33 16 16 C 0.00 0.22 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C -0.12 -4.22 8.92 22.27 0.20 -4.02 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 27 H 0.07 1.54 8.09 -2.39 -0.02 1.53 16 28 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.14 3.26 8.06 -2.92 -0.02 3.24 16 30 H 0.08 2.34 8.05 -2.38 -0.02 2.32 16 31 H 0.05 2.10 5.66 -2.39 -0.01 2.09 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.36 6.79 -2.39 -0.02 1.34 16 35 H 0.34 13.43 7.91 -89.69 -0.71 12.72 16 36 H 0.33 12.51 7.21 -89.69 -0.65 11.86 16 37 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H -0.01 -0.53 6.89 -2.39 -0.02 -0.54 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.12 4.01 6.29 -2.91 -0.02 3.99 16 Total: -1.00 -64.04 319.35 3.47 -60.58 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.33 Total: 35.39 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 2.99 Total: -51.71 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.23 Total: -90.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.04 3.47 -60.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.561 kcal (2) G-P(sol) polarization free energy of solvation -64.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds