Wall clock time and date at job start Mon Mar 30 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99749 * 2 1 4 4 C 1.46894 * 111.00174 * 123.95526 * 2 1 3 5 5 C 1.50704 * 109.47179 * 169.99807 * 4 2 1 6 6 C 1.38237 * 119.99626 * 90.00161 * 5 4 2 7 7 C 1.38231 * 120.00017 * 179.97438 * 6 5 4 8 8 C 1.38239 * 119.99667 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99691 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47504 * 4.46083 * 9 8 7 11 11 C 1.53002 * 109.47166 * 244.45965 * 9 8 7 12 12 C 1.50708 * 109.46878 * 124.46137 * 9 8 7 13 13 H 1.07998 * 119.99980 * 0.16579 * 12 9 8 14 14 C 1.37882 * 119.99674 * 179.89400 * 12 9 8 15 15 N 1.31516 * 120.00048 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99595 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47016 * 60.00342 * 16 14 12 18 18 H 1.48499 * 109.46939 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47244 * 300.00084 * 16 14 12 20 20 C 1.38236 * 120.00223 * 0.24944 * 8 7 6 21 21 C 1.38226 * 120.00143 * 270.02163 * 5 4 2 22 22 H 1.08995 * 109.47022 * 296.04091 * 1 2 3 23 23 H 1.09000 * 109.47466 * 56.04513 * 1 2 3 24 24 H 1.09003 * 109.46655 * 176.04283 * 1 2 3 25 25 H 1.08998 * 109.47047 * 183.95513 * 3 2 1 26 26 H 1.08997 * 109.47429 * 303.95284 * 3 2 1 27 27 H 1.09005 * 109.47093 * 63.95574 * 3 2 1 28 28 H 1.09003 * 109.47376 * 50.00357 * 4 2 1 29 29 H 1.08998 * 109.47216 * 289.99918 * 4 2 1 30 30 H 1.08002 * 120.00308 * 0.02562 * 6 5 4 31 31 H 1.07996 * 120.00461 * 179.97438 * 7 6 5 32 32 H 1.08993 * 109.47374 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46928 * 299.99856 * 10 9 8 34 34 H 1.09003 * 109.47187 * 59.99652 * 10 9 8 35 35 H 1.09007 * 109.46794 * 299.99922 * 11 9 8 36 36 H 1.08993 * 109.46923 * 60.00202 * 11 9 8 37 37 H 1.09003 * 109.46847 * 180.02562 * 11 9 8 38 38 H 0.97000 * 119.99724 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.00035 * 179.72827 * 20 8 7 40 40 H 1.07995 * 120.00371 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 4.3576 -0.0185 1.4939 7 6 5.7209 -0.1898 1.3432 8 6 6.2085 -1.2949 0.6709 9 6 7.6949 -1.4813 0.5062 10 6 8.4346 -0.3769 1.2637 11 6 8.0562 -1.4112 -0.9789 12 6 8.0968 -2.8249 1.0580 13 1 7.3501 -3.4795 1.4828 14 6 9.4169 -3.2208 1.0154 15 7 10.3251 -2.4261 0.4928 16 14 9.9151 -4.8858 1.7001 17 1 9.1952 -5.9580 0.9670 18 1 11.3792 -5.0710 1.5348 19 1 9.5669 -4.9524 3.1421 20 6 5.3326 -2.2260 0.1448 21 6 3.9694 -2.0573 0.3001 22 1 -0.3633 0.4511 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7043 1.8723 0.9234 28 1 1.5091 -1.7407 1.1755 29 1 1.7976 -0.2248 2.0627 30 1 3.9766 0.8447 2.0195 31 1 6.4051 0.5401 1.7500 32 1 9.5095 -0.5120 1.1449 33 1 8.1439 0.5949 0.8646 34 1 8.1772 -0.4268 2.3218 35 1 7.5292 -2.1981 -1.5186 36 1 7.7655 -0.4395 -1.3780 37 1 9.1312 -1.5465 -1.0980 38 1 11.2539 -2.7044 0.4632 39 1 5.7135 -3.0871 -0.3842 40 1 3.2852 -2.7866 -0.1077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:08 Heat of formation + Delta-G solvation = 7.717394 kcal Electronic energy + Delta-G solvation = -18110.517591 eV Core-core repulsion = 15503.286806 eV Total energy + Delta-G solvation = -2607.230785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.60327 -38.41642 -36.65367 -33.59115 -31.78098 -31.17462 -28.43137 -27.65255 -27.31233 -27.07798 -23.67316 -22.98446 -22.00761 -20.52398 -18.06010 -17.37051 -16.55885 -16.37530 -16.32660 -15.62595 -15.35780 -15.17291 -14.77588 -14.17806 -14.10901 -13.64322 -13.27843 -13.23026 -13.16407 -12.94419 -12.73299 -12.63950 -12.56315 -12.43502 -12.32260 -12.09424 -12.05404 -11.83937 -11.37687 -11.00519 -10.76530 -10.34866 -9.59385 -9.34480 -9.05872 -7.98150 -6.14059 0.68166 0.71973 1.43767 1.44461 1.51536 2.46424 2.94344 3.24022 3.39528 3.95532 4.07428 4.29873 4.33193 4.39463 4.44243 4.52107 4.64306 4.74685 4.79049 4.83668 4.84716 4.93302 4.99440 5.04649 5.05483 5.09641 5.12456 5.35908 5.38401 5.44144 5.62247 5.64771 5.77223 5.82686 5.92625 6.09436 6.17267 6.18316 6.32032 6.38172 6.50264 6.90444 7.52655 9.00229 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039523 B = 0.005222 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.269624 B = 5360.190360 C = 5669.224806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.022 3.978 4 C 0.105 3.895 5 C -0.104 4.104 6 C -0.111 4.111 7 C -0.146 4.146 8 C -0.052 4.052 9 C 0.085 3.915 10 C -0.120 4.120 11 C -0.115 4.115 12 C -0.512 4.512 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.905 5.905 16 Si 0.945 3.055 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.130 4.130 21 C -0.104 4.104 22 H 0.031 0.969 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.020 0.980 37 H 0.063 0.937 38 H 0.259 0.741 39 H 0.104 0.896 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 5.464 0.530 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.126 4.126 4 C -0.022 4.022 5 C -0.104 4.104 6 C -0.129 4.129 7 C -0.164 4.164 8 C -0.053 4.053 9 C 0.085 3.915 10 C -0.178 4.178 11 C -0.173 4.173 12 C -0.550 4.550 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.544 5.544 16 Si 0.771 3.229 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.203 1.203 20 C -0.148 4.148 21 C -0.123 4.123 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.870 5.243 0.060 16.714 hybrid contribution 0.621 -0.600 0.982 1.307 sum -15.249 4.644 1.041 15.974 Atomic orbital electron populations 1.22429 0.85822 1.02889 1.01090 1.61952 1.08882 1.14443 1.43154 1.22440 1.00892 0.88390 1.00896 1.20957 0.90299 0.99170 0.91753 1.19742 0.95463 0.95271 0.99929 1.21107 0.92469 0.99107 1.00266 1.21283 0.95864 0.98282 1.00931 1.20473 0.96788 0.93478 0.94516 1.17257 0.86998 0.94338 0.92933 1.21718 1.02547 0.95941 0.97572 1.21644 1.02356 0.96697 0.96563 1.21263 0.92979 1.01603 1.39149 0.93779 1.25529 0.96647 0.99792 0.95587 1.69930 1.01620 1.37118 1.45708 0.85825 0.76978 0.81205 0.78864 1.20082 1.20940 1.20270 1.21033 0.93481 0.99176 1.01114 1.21077 0.94361 0.98166 0.98673 0.95015 0.90598 0.90784 0.92334 0.90687 0.94850 0.89331 0.93372 0.85025 0.86154 0.92173 0.95212 0.95660 0.95800 0.96101 0.91841 0.93148 0.87740 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.57 127.69 1.22 1.63 16 2 N -0.56 -12.51 5.01 -953.48 -4.78 -17.29 16 3 C 0.02 0.46 9.14 127.69 1.17 1.63 16 4 C 0.11 2.45 5.12 85.56 0.44 2.89 16 5 C -0.10 -3.14 4.88 -19.87 -0.10 -3.24 16 6 C -0.11 -3.52 7.97 22.27 0.18 -3.34 16 7 C -0.15 -5.58 8.99 22.27 0.20 -5.38 16 8 C -0.05 -2.30 4.72 -19.86 -0.09 -2.39 16 9 C 0.08 4.20 0.58 -53.67 -0.03 4.17 16 10 C -0.12 -5.78 6.92 71.98 0.50 -5.29 16 11 C -0.11 -5.65 8.10 71.98 0.58 -5.07 16 12 C -0.51 -27.81 7.58 25.60 0.19 -27.62 16 13 H 0.04 2.44 7.48 -2.91 -0.02 2.41 16 14 C 0.02 1.27 5.15 84.66 0.44 1.70 16 15 N -0.90 -50.20 9.35 21.45 0.20 -50.00 16 16 Si 0.94 43.49 29.54 68.60 2.03 45.52 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C -0.13 -5.33 8.61 22.27 0.19 -5.14 16 21 C -0.10 -3.54 9.70 22.27 0.22 -3.32 16 22 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 24 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 25 H 0.06 1.46 6.17 -2.39 -0.01 1.44 16 26 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 27 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 29 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 30 H 0.13 3.41 8.03 -2.91 -0.02 3.38 16 31 H 0.12 4.48 5.90 -2.91 -0.02 4.46 16 32 H 0.06 3.18 6.08 -2.39 -0.01 3.16 16 33 H 0.03 1.27 7.30 -2.39 -0.02 1.25 16 34 H 0.02 1.17 7.72 -2.39 -0.02 1.15 16 35 H 0.02 1.13 7.64 -2.38 -0.02 1.11 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 38 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.10 4.49 7.72 -2.91 -0.02 4.47 16 40 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -58.52 313.59 3.54 -54.98 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.99 Total: 15.55 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 5.10 Total: -48.76 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -4.58 Total: -67.29 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -58.52 3.54 -54.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.698 kcal (2) G-P(sol) polarization free energy of solvation -58.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds