Wall clock time and date at job start Mon Mar 30 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 N 1.46490 * 109.47262 * 120.00301 * 2 1 3 5 5 C 1.36665 * 125.59946 * 300.20062 * 4 2 1 6 6 C 1.33980 * 108.05118 * 180.18756 * 5 4 2 7 7 C 1.41455 * 107.54493 * 359.88223 * 6 5 4 8 8 C 1.33969 * 107.54908 * 359.82969 * 7 6 5 9 9 C 1.50799 * 123.50313 * 179.74252 * 7 6 5 10 10 H 1.08995 * 109.73817 * 103.19574 * 9 7 6 11 11 C 1.50701 * 109.73156 * 223.84075 * 9 7 6 12 12 H 1.07996 * 119.99708 * 32.68947 * 11 9 7 13 13 C 1.37876 * 119.99827 * 212.69499 * 11 9 7 14 14 N 1.31513 * 119.99834 * 5.17691 * 13 11 9 15 15 Si 1.86796 * 119.99774 * 185.18369 * 13 11 9 16 16 H 1.48500 * 109.47365 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47475 * 119.99561 * 15 13 11 18 18 H 1.48505 * 109.47102 * 239.99672 * 15 13 11 19 19 C 1.53422 * 108.11678 * 343.48927 * 9 7 6 20 20 H 1.09004 * 109.41260 * 170.67622 * 19 9 7 21 21 C 1.53000 * 109.41881 * 290.53788 * 19 9 7 22 22 C 1.53016 * 109.81945 * 50.64736 * 19 9 7 23 23 C 1.50798 * 128.94663 * 180.02562 * 6 5 4 24 24 H 1.08998 * 109.47558 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47268 * 299.99548 * 1 2 3 27 27 H 1.09001 * 109.46788 * 240.00226 * 2 1 3 28 28 H 1.09000 * 109.47344 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47559 * 300.00510 * 3 2 1 30 30 H 1.09001 * 109.46769 * 60.00146 * 3 2 1 31 31 H 1.07995 * 125.97529 * 359.89659 * 5 4 2 32 32 H 1.07998 * 125.97332 * 180.11557 * 8 7 6 33 33 H 0.97000 * 119.99378 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.46916 * 60.00083 * 21 19 9 35 35 H 1.09000 * 109.46927 * 179.97438 * 21 19 9 36 36 H 1.09002 * 109.46823 * 300.00202 * 21 19 9 37 37 H 1.09003 * 109.40940 * 48.15147 * 22 19 9 38 38 H 1.09000 * 109.41198 * 167.93747 * 22 19 9 39 39 H 1.08998 * 109.73464 * 43.63282 * 23 6 5 40 40 H 1.09005 * 109.76496 * 282.97190 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.7566 -0.3271 2.4872 6 6 2.3774 -1.1954 3.2969 7 6 3.0482 -2.1356 2.4801 8 6 2.8074 -1.8064 1.2040 9 6 3.8700 -3.2760 3.0261 10 1 3.3080 -4.2064 2.9454 11 6 5.1581 -3.3909 2.2523 12 1 5.6283 -2.5049 1.8519 13 6 5.7361 -4.6271 2.0555 14 7 5.1134 -5.7149 2.4535 15 14 7.4036 -4.7566 1.2237 16 1 7.8891 -3.3976 0.8735 17 1 8.3688 -5.4046 2.1477 18 1 7.2785 -5.5707 -0.0120 19 6 4.1760 -2.9806 4.5002 20 1 4.6242 -3.8611 4.9606 21 6 5.1523 -1.8061 4.5916 22 6 2.8830 -2.6257 5.2374 23 6 2.4028 -1.2343 4.8042 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.1581 0.5156 2.8001 32 1 3.1763 -2.3288 0.3337 33 1 5.5203 -6.5846 2.3154 34 1 4.7059 -0.9258 4.1293 35 1 5.3699 -1.5953 5.6387 36 1 6.0762 -2.0604 4.0721 37 1 2.1167 -3.3638 5.0006 38 1 3.0664 -2.6273 6.3119 39 1 1.4012 -1.0528 5.1940 40 1 3.0875 -0.4745 5.1810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:19 Heat of formation + Delta-G solvation = 26.723626 kcal Electronic energy + Delta-G solvation = -18740.246358 eV Core-core repulsion = 16133.839745 eV Total energy + Delta-G solvation = -2606.406613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69958 -37.00567 -34.36045 -32.74976 -30.37670 -28.97423 -27.28356 -27.16725 -25.76390 -24.34778 -22.73725 -20.47601 -19.52234 -18.89924 -16.81925 -16.20973 -15.82022 -14.70171 -14.42774 -14.21604 -13.98809 -13.54012 -12.89278 -12.73116 -12.50717 -12.38618 -12.15600 -12.01753 -11.65115 -11.51547 -11.27355 -11.05808 -10.95376 -10.87417 -10.76449 -10.50178 -10.42140 -9.94251 -9.76151 -9.32377 -8.83150 -8.62840 -8.33229 -7.29085 -6.99956 -5.88101 -3.88392 3.12043 3.34872 3.43474 3.47580 3.59088 4.08628 4.55033 4.73032 5.04567 5.13704 5.40704 5.46977 5.47959 5.68206 5.68932 5.82138 5.89702 5.96284 6.01473 6.03951 6.15350 6.21670 6.49568 6.51535 6.58267 6.69726 6.73080 6.91743 7.02030 7.09145 7.17613 7.36471 7.59553 7.61092 7.81801 7.94801 8.08464 8.14224 8.29987 8.35621 8.67690 9.20799 9.72722 11.19994 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.008125 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.427130 B = 3445.157319 C = 4275.899742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.461 5.461 5 C -0.028 4.028 6 C -0.173 4.173 7 C -0.110 4.110 8 C -0.017 4.017 9 C 0.103 3.897 10 H 0.061 0.939 11 C -0.488 4.488 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.882 3.118 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.287 1.287 19 C -0.075 4.075 20 H 0.056 0.944 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.038 4.038 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.258 0.742 34 H 0.047 0.953 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 11.086 -1.820 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.141 5.141 5 C -0.155 4.155 6 C -0.181 4.181 7 C -0.116 4.116 8 C -0.143 4.143 9 C 0.084 3.916 10 H 0.078 0.922 11 C -0.527 4.527 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.535 5.535 15 Si 0.710 3.290 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.213 1.213 19 C -0.094 4.094 20 H 0.074 0.926 21 C -0.185 4.185 22 C -0.148 4.148 23 C -0.075 4.075 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.677 11.058 -2.137 13.630 hybrid contribution 0.953 -0.116 -0.531 1.097 sum -6.724 10.942 -2.668 13.117 Atomic orbital electron populations 1.22156 0.94557 1.02808 1.02243 1.21159 0.94498 0.93509 0.87800 1.22152 1.02160 0.95242 1.02215 1.44130 1.41752 1.23728 1.04487 1.20814 1.08464 1.03130 0.83103 1.19468 1.04558 0.99229 0.94805 1.20168 1.00536 0.99466 0.91389 1.21288 1.01851 0.91770 0.99382 1.17531 0.93335 0.91197 0.89565 0.92155 1.21078 1.06517 0.92231 1.32864 0.92852 1.24969 0.97180 0.96087 0.95705 1.69941 1.37632 0.97600 1.48323 0.86697 0.85138 0.77961 0.79167 1.19860 1.21137 1.21326 1.21178 0.92828 0.96812 0.98549 0.92596 1.21731 1.00434 0.98636 0.97704 1.21627 0.99184 0.96028 0.97994 1.19937 0.98830 0.97662 0.91112 0.91571 0.91906 0.92107 0.89100 0.91860 0.91570 0.92126 0.84170 0.82950 0.93233 0.93405 0.96175 0.92267 0.92872 0.93995 0.93422 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.23 37.16 0.34 -1.39 16 2 C 0.13 1.72 3.55 -67.94 -0.24 1.48 16 3 C -0.16 -1.77 9.24 37.16 0.34 -1.42 16 4 N -0.46 -7.93 2.63 -110.33 -0.29 -8.22 16 5 C -0.03 -0.48 10.33 -16.89 -0.17 -0.66 16 6 C -0.17 -3.45 5.09 -104.85 -0.53 -3.98 16 7 C -0.11 -2.49 4.94 -104.85 -0.52 -3.01 16 8 C -0.02 -0.36 10.94 -16.90 -0.18 -0.55 16 9 C 0.10 2.61 2.41 -92.66 -0.22 2.38 16 10 H 0.06 1.74 7.30 -51.93 -0.38 1.36 16 11 C -0.49 -13.30 6.33 -34.44 -0.22 -13.52 16 12 H 0.05 1.48 7.80 -52.49 -0.41 1.07 16 13 C 0.06 1.70 5.45 -17.82 -0.10 1.60 16 14 N -0.90 -26.14 12.80 55.43 0.71 -25.43 16 15 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 C -0.07 -1.71 2.83 -90.39 -0.26 -1.97 16 20 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 21 C -0.13 -2.75 7.97 37.16 0.30 -2.45 16 22 C -0.11 -2.18 5.52 -26.50 -0.15 -2.32 16 23 C -0.04 -0.68 5.66 -27.61 -0.16 -0.84 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 27 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 32 H 0.15 3.19 8.06 -52.49 -0.42 2.77 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.05 1.02 5.55 -51.93 -0.29 0.73 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.37 6.97 -51.93 -0.36 1.01 16 37 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.01 6.97 -51.93 -0.36 0.65 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -29.48 311.93 -8.49 -37.97 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.82 Total: 1.15 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -1.77 Total: -26.64 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.42 Total: -33.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.48 -8.49 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.697 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds