Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 N 1.46490 * 109.47262 * 120.00301 * 2 1 3 5 5 C 1.36665 * 125.59946 * 300.20062 * 4 2 1 6 6 C 1.33980 * 108.05118 * 180.18756 * 5 4 2 7 7 C 1.41455 * 107.54493 * 359.88223 * 6 5 4 8 8 C 1.33969 * 107.54908 * 359.82969 * 7 6 5 9 9 C 1.50799 * 123.50313 * 179.74252 * 7 6 5 10 10 H 1.08995 * 109.73817 * 103.19574 * 9 7 6 11 11 C 1.50701 * 109.73156 * 223.84075 * 9 7 6 12 12 H 1.07996 * 119.99708 * 32.68947 * 11 9 7 13 13 C 1.37876 * 119.99827 * 212.69499 * 11 9 7 14 14 N 1.31513 * 119.99834 * 5.17691 * 13 11 9 15 15 Si 1.86796 * 119.99774 * 185.18369 * 13 11 9 16 16 H 1.48500 * 109.47365 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47475 * 119.99561 * 15 13 11 18 18 H 1.48505 * 109.47102 * 239.99672 * 15 13 11 19 19 C 1.53422 * 108.11678 * 343.48927 * 9 7 6 20 20 H 1.09004 * 109.41260 * 170.67622 * 19 9 7 21 21 C 1.53000 * 109.41881 * 290.53788 * 19 9 7 22 22 C 1.53016 * 109.81945 * 50.64736 * 19 9 7 23 23 C 1.50798 * 128.94663 * 180.02562 * 6 5 4 24 24 H 1.08998 * 109.47558 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47268 * 299.99548 * 1 2 3 27 27 H 1.09001 * 109.46788 * 240.00226 * 2 1 3 28 28 H 1.09000 * 109.47344 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47559 * 300.00510 * 3 2 1 30 30 H 1.09001 * 109.46769 * 60.00146 * 3 2 1 31 31 H 1.07995 * 125.97529 * 359.89659 * 5 4 2 32 32 H 1.07998 * 125.97332 * 180.11557 * 8 7 6 33 33 H 0.97000 * 119.99378 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.46916 * 60.00083 * 21 19 9 35 35 H 1.09000 * 109.46927 * 179.97438 * 21 19 9 36 36 H 1.09002 * 109.46823 * 300.00202 * 21 19 9 37 37 H 1.09003 * 109.40940 * 48.15147 * 22 19 9 38 38 H 1.09000 * 109.41198 * 167.93747 * 22 19 9 39 39 H 1.08998 * 109.73464 * 43.63282 * 23 6 5 40 40 H 1.09005 * 109.76496 * 282.97190 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.7566 -0.3271 2.4872 6 6 2.3774 -1.1954 3.2969 7 6 3.0482 -2.1356 2.4801 8 6 2.8074 -1.8064 1.2040 9 6 3.8700 -3.2760 3.0261 10 1 3.3080 -4.2064 2.9454 11 6 5.1581 -3.3909 2.2523 12 1 5.6283 -2.5049 1.8519 13 6 5.7361 -4.6271 2.0555 14 7 5.1134 -5.7149 2.4535 15 14 7.4036 -4.7566 1.2237 16 1 7.8891 -3.3976 0.8735 17 1 8.3688 -5.4046 2.1477 18 1 7.2785 -5.5707 -0.0120 19 6 4.1760 -2.9806 4.5002 20 1 4.6242 -3.8611 4.9606 21 6 5.1523 -1.8061 4.5916 22 6 2.8830 -2.6257 5.2374 23 6 2.4028 -1.2343 4.8042 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.1581 0.5156 2.8001 32 1 3.1763 -2.3288 0.3337 33 1 5.5203 -6.5846 2.3154 34 1 4.7059 -0.9258 4.1293 35 1 5.3699 -1.5953 5.6387 36 1 6.0762 -2.0604 4.0721 37 1 2.1167 -3.3638 5.0006 38 1 3.0664 -2.6273 6.3119 39 1 1.4012 -1.0528 5.1940 40 1 3.0875 -0.4745 5.1810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = 12.386631 kcal Electronic energy + Delta-G solvation = -18740.868056 eV Core-core repulsion = 16133.839745 eV Total energy + Delta-G solvation = -2607.028311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18067 -38.57515 -35.61666 -34.72081 -32.15196 -30.48419 -28.72547 -28.12951 -27.61322 -26.13939 -24.31001 -21.86690 -21.16774 -20.34992 -18.54963 -17.91695 -17.47346 -16.50019 -16.00529 -15.40988 -15.32305 -15.05712 -14.55794 -14.24370 -13.89723 -13.77485 -13.57982 -13.21897 -13.19042 -12.90743 -12.83941 -12.71779 -12.55874 -12.32571 -12.14461 -12.10094 -11.90225 -11.74443 -11.55591 -11.17332 -10.75512 -10.56307 -10.37730 -8.76007 -8.64308 -8.01419 -6.09349 1.37795 1.40073 1.51317 1.67147 2.30597 2.38292 2.53850 3.24879 3.76398 4.09947 4.18966 4.25715 4.33069 4.36707 4.44193 4.58794 4.70919 4.74297 4.83022 4.86250 4.93147 4.94025 5.00814 5.05858 5.13949 5.24121 5.29193 5.30913 5.34401 5.43865 5.51690 5.65899 5.69043 5.79894 5.91416 6.04337 6.12082 6.47983 6.53603 6.74134 6.93124 7.07932 7.54236 9.04906 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.008125 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.427130 B = 3445.157319 C = 4275.899742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.121 3.879 3 C -0.152 4.152 4 N -0.451 5.451 5 C -0.005 4.005 6 C -0.198 4.198 7 C -0.145 4.145 8 C -0.034 4.034 9 C 0.103 3.897 10 H 0.010 0.990 11 C -0.487 4.487 12 H 0.044 0.956 13 C 0.008 3.992 14 N -0.933 5.933 15 Si 0.944 3.056 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.075 4.075 20 H 0.021 0.979 21 C -0.115 4.115 22 C -0.105 4.105 23 C -0.030 4.030 24 H 0.096 0.904 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.181 0.819 32 H 0.139 0.861 33 H 0.258 0.742 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 14.190 -1.885 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 C -0.210 4.210 4 N -0.130 5.130 5 C -0.134 4.134 6 C -0.206 4.206 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.083 3.917 10 H 0.028 0.972 11 C -0.526 4.526 12 H 0.062 0.938 13 C -0.189 4.189 14 N -0.574 5.574 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.094 4.094 20 H 0.040 0.960 21 C -0.172 4.172 22 C -0.143 4.143 23 C -0.068 4.068 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.198 0.802 32 H 0.157 0.843 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.741 14.190 -2.224 16.814 hybrid contribution 1.215 -1.050 -0.580 1.707 sum -7.527 13.139 -2.803 15.400 Atomic orbital electron populations 1.22113 0.92423 1.02342 1.04117 1.21580 0.96132 0.94301 0.85976 1.22111 1.00981 0.93812 1.04107 1.44380 1.40128 1.22344 1.06120 1.21330 1.06728 1.02838 0.82493 1.19702 1.05441 0.99428 0.95991 1.20026 1.02134 0.99996 0.92966 1.21137 1.03104 0.93437 0.98460 1.17329 0.92433 0.90481 0.91416 0.97226 1.21267 1.07175 0.91773 1.32375 0.93816 1.25696 1.00573 0.95826 0.96768 1.70086 1.39210 0.97992 1.50090 0.85713 0.80974 0.78049 0.78208 1.19232 1.20766 1.20866 1.21061 0.95034 0.96211 0.97090 0.96020 1.21577 0.98620 0.97815 0.99183 1.21544 0.96688 0.97127 0.98933 1.19937 1.00656 0.96257 0.89942 0.88528 0.93539 0.91404 0.89165 0.93654 0.88506 0.91420 0.80167 0.84348 0.93333 0.92955 0.93328 0.94806 0.94471 0.91519 0.90558 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.23 71.98 0.66 -2.11 16 2 C 0.12 2.82 3.55 44.99 0.16 2.98 16 3 C -0.15 -2.83 9.24 71.98 0.67 -2.16 16 4 N -0.45 -14.83 2.63 -502.97 -1.32 -16.16 16 5 C 0.00 -0.16 10.33 82.97 0.86 0.70 16 6 C -0.20 -7.63 5.09 -20.01 -0.10 -7.73 16 7 C -0.14 -6.73 4.94 -20.01 -0.10 -6.83 16 8 C -0.03 -1.45 10.94 82.97 0.91 -0.54 16 9 C 0.10 5.49 2.41 -12.11 -0.03 5.46 16 10 H 0.01 0.60 7.30 -2.39 -0.02 0.58 16 11 C -0.49 -27.82 6.33 25.60 0.16 -27.66 16 12 H 0.04 2.52 7.80 -2.91 -0.02 2.50 16 13 C 0.01 0.47 5.45 84.65 0.46 0.93 16 14 N -0.93 -57.34 12.80 21.45 0.27 -57.06 16 15 Si 0.94 45.60 29.54 68.60 2.03 47.63 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 C -0.07 -3.54 2.83 -10.65 -0.03 -3.57 16 20 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 21 C -0.11 -4.92 7.97 71.98 0.57 -4.35 16 22 C -0.11 -4.09 5.52 30.74 0.17 -3.92 16 23 C -0.03 -1.02 5.66 30.02 0.17 -0.85 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.16 7.91 -2.39 -0.02 1.14 16 27 H 0.09 2.09 8.06 -2.39 -0.02 2.08 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.18 7.92 -2.39 -0.02 1.16 16 31 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.14 6.14 8.06 -2.91 -0.02 6.12 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.05 2.18 5.55 -2.39 -0.01 2.17 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.58 6.97 -2.39 -0.02 1.56 16 37 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.21 6.97 -2.38 -0.02 2.19 16 Total: -1.00 -67.77 311.93 6.49 -61.28 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.98 Total: 13.94 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.53 Total: -49.64 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.05 Total: -73.22 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.77 6.49 -61.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.667 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds