Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 N 1.46498 * 109.47018 * 120.00023 * 2 1 3 5 5 C 1.36664 * 125.59834 * 299.99983 * 4 2 1 6 6 C 1.33973 * 108.05147 * 179.97438 * 5 4 2 7 7 C 1.41451 * 107.54868 * 0.16115 * 6 5 4 8 8 C 1.33974 * 107.54734 * 359.79928 * 7 6 5 9 9 C 1.50796 * 123.50507 * 179.74118 * 7 6 5 10 10 H 1.08997 * 109.72994 * 223.76344 * 9 7 6 11 11 C 1.50699 * 109.77383 * 103.09931 * 9 7 6 12 12 H 1.08005 * 120.00151 * 295.56992 * 11 9 7 13 13 C 1.37879 * 119.99977 * 115.56972 * 11 9 7 14 14 N 1.31518 * 119.99980 * 173.32637 * 13 11 9 15 15 Si 1.86791 * 120.00146 * 353.33075 * 13 11 9 16 16 H 1.48497 * 109.47634 * 86.07312 * 15 13 11 17 17 H 1.48506 * 109.47423 * 206.07774 * 15 13 11 18 18 H 1.48500 * 109.47090 * 326.07257 * 15 13 11 19 19 C 1.53415 * 108.11837 * 343.42163 * 9 7 6 20 20 H 1.09005 * 109.41309 * 290.54704 * 19 9 7 21 21 C 1.53000 * 109.41263 * 170.76724 * 19 9 7 22 22 C 1.53006 * 109.82638 * 50.65754 * 19 9 7 23 23 C 1.50795 * 128.94720 * 180.21639 * 6 5 4 24 24 H 1.09005 * 109.47411 * 300.00371 * 1 2 3 25 25 H 1.09005 * 109.47447 * 60.00033 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46692 * 239.99461 * 2 1 3 28 28 H 1.08997 * 109.47436 * 59.99667 * 3 2 1 29 29 H 1.08999 * 109.47214 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46900 * 299.99819 * 3 2 1 31 31 H 1.07994 * 125.97507 * 359.92942 * 5 4 2 32 32 H 1.07997 * 125.97603 * 180.18715 * 8 7 6 33 33 H 0.96996 * 120.00373 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47607 * 59.99846 * 21 19 9 35 35 H 1.09001 * 109.47197 * 180.02562 * 21 19 9 36 36 H 1.09000 * 109.47033 * 299.99379 * 21 19 9 37 37 H 1.08996 * 109.40842 * 48.17523 * 22 19 9 38 38 H 1.08995 * 109.41507 * 167.96261 * 22 19 9 39 39 H 1.09001 * 109.72833 * 43.71087 * 23 6 5 40 40 H 1.08995 * 109.77792 * 283.04269 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7596 -0.3248 2.4873 6 6 2.3753 -1.1966 3.2971 7 6 3.0450 -2.1376 2.4804 8 6 2.8080 -1.8059 1.2042 9 6 3.8615 -3.2817 3.0266 10 1 4.7936 -3.3680 2.4682 11 6 3.0801 -4.5654 2.9134 12 1 2.1649 -4.6916 3.4728 13 6 3.5336 -5.5787 2.0957 14 7 2.9266 -6.7454 2.0960 15 14 5.0102 -5.2945 0.9875 16 1 6.2576 -5.5708 1.7443 17 1 4.9312 -6.2023 -0.1851 18 1 5.0157 -3.8843 0.5221 19 6 4.1661 -2.9891 4.5014 20 1 4.8647 -2.1550 4.5685 21 6 4.7915 -4.2273 5.1469 22 6 2.8734 -2.6302 5.2371 23 6 2.3982 -1.2371 4.8043 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.1637 0.5198 2.8001 32 1 3.1763 -2.3287 0.3340 33 1 3.2453 -7.4581 1.5205 34 1 5.7159 -4.4801 4.6276 35 1 5.0080 -4.0206 6.1950 36 1 4.0958 -5.0635 5.0781 37 1 2.1049 -3.3654 4.9986 38 1 3.0553 -2.6333 6.3117 39 1 1.3965 -1.0529 5.1926 40 1 3.0846 -0.4799 5.1832 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = 26.796030 kcal Electronic energy + Delta-G solvation = -18746.952646 eV Core-core repulsion = 16140.549173 eV Total energy + Delta-G solvation = -2606.403473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73219 -37.00270 -34.50145 -32.54307 -30.90560 -29.43099 -27.38052 -27.30602 -26.14954 -23.56061 -22.72956 -20.54268 -19.50980 -18.97349 -17.69051 -16.35113 -16.18123 -14.49227 -14.35623 -14.12538 -13.79767 -13.55159 -12.94229 -12.87620 -12.72663 -12.49989 -12.41232 -12.16096 -11.91355 -11.63720 -11.20858 -11.17952 -10.99882 -10.93082 -10.79866 -10.48691 -10.37701 -10.20779 -9.66048 -9.49542 -8.95874 -8.85580 -8.42208 -7.35443 -7.06862 -5.95208 -3.88316 3.04973 3.34409 3.42585 3.44942 3.53429 4.00423 4.52075 4.69520 5.01146 5.10203 5.38959 5.43214 5.45377 5.62437 5.66497 5.77705 5.83135 5.85928 5.92368 5.99143 6.10053 6.14644 6.32477 6.42430 6.43581 6.57814 6.72160 6.78676 6.88623 6.92834 6.98953 7.22697 7.23994 7.46083 7.54593 7.59312 7.93582 8.00382 8.19071 8.24749 8.71002 9.13093 9.69455 11.18566 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.008995 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.593342 B = 3112.054010 C = 3945.972220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 C -0.159 4.159 4 N -0.459 5.459 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.109 4.109 8 C -0.027 4.027 9 C 0.077 3.923 10 H 0.035 0.965 11 C -0.478 4.478 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.906 5.906 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.266 1.266 19 C -0.073 4.073 20 H 0.038 0.962 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.039 4.039 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.260 0.740 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 14.181 -1.592 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.217 4.217 4 N -0.138 5.138 5 C -0.150 4.150 6 C -0.177 4.177 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.058 3.942 10 H 0.053 0.947 11 C -0.516 4.516 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.545 5.545 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.191 1.191 19 C -0.092 4.092 20 H 0.057 0.943 21 C -0.190 4.190 22 C -0.140 4.140 23 C -0.077 4.077 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.642 14.152 -1.995 14.386 hybrid contribution 0.663 0.028 -0.876 1.099 sum -0.979 14.179 -2.871 14.500 Atomic orbital electron populations 1.22160 0.94328 1.03093 1.02273 1.21182 0.94774 0.93404 0.87655 1.22154 1.01955 0.95246 1.02369 1.44102 1.41554 1.23531 1.04651 1.20837 1.08141 1.03036 0.82958 1.19398 1.04899 0.98550 0.94872 1.20081 1.02505 0.97460 0.91495 1.21168 1.02872 0.92318 0.98901 1.17874 0.93767 0.91605 0.90961 0.94735 1.20847 1.09344 0.95666 1.25763 0.90760 1.25028 0.96396 0.94983 0.96727 1.69906 1.41739 1.03006 1.39818 0.86978 0.84060 0.78038 0.81091 1.20350 1.22031 1.19148 1.21099 0.95003 0.95725 0.97381 0.94320 1.21716 1.00604 0.99749 0.96905 1.21511 0.98972 0.96176 0.97377 1.19938 0.99305 0.97466 0.90963 0.92038 0.91510 0.91673 0.89163 0.92020 0.92011 0.91469 0.83904 0.83532 0.92975 0.94290 0.95375 0.90654 0.90973 0.93873 0.92886 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.24 37.16 0.34 -1.49 16 2 C 0.13 1.73 3.55 -67.94 -0.24 1.49 16 3 C -0.16 -1.69 9.24 37.15 0.34 -1.35 16 4 N -0.46 -7.99 2.63 -110.33 -0.29 -8.28 16 5 C -0.02 -0.38 10.33 -16.90 -0.17 -0.56 16 6 C -0.17 -3.39 5.92 -104.85 -0.62 -4.01 16 7 C -0.11 -2.46 5.17 -104.85 -0.54 -3.01 16 8 C -0.03 -0.57 11.36 -16.90 -0.19 -0.76 16 9 C 0.08 1.86 2.18 -92.66 -0.20 1.66 16 10 H 0.03 0.86 4.89 -51.93 -0.25 0.61 16 11 C -0.48 -13.21 6.80 -34.44 -0.23 -13.44 16 12 H 0.07 2.27 7.00 -52.48 -0.37 1.90 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.91 -27.61 13.96 55.43 0.77 -26.84 16 15 Si 0.87 21.72 26.94 -169.99 -4.58 17.14 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.27 -6.38 6.82 56.52 0.39 -5.99 16 19 C -0.07 -1.55 2.43 -90.40 -0.22 -1.77 16 20 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 21 C -0.13 -2.76 8.77 37.16 0.33 -2.43 16 22 C -0.10 -2.01 5.14 -26.51 -0.14 -2.15 16 23 C -0.04 -0.70 6.30 -27.62 -0.17 -0.87 16 24 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.15 3.07 8.06 -52.49 -0.42 2.64 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.75 7.00 -51.93 -0.36 1.39 16 37 H 0.07 1.59 6.64 -51.93 -0.34 1.25 16 38 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -30.59 311.62 -8.01 -38.60 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.79 Total: 1.50 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -1.82 Total: -26.82 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.48 Total: -35.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.58 Total: 17.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.59 -8.01 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.396 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds