Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 N 1.46498 * 109.47018 * 120.00023 * 2 1 3 5 5 C 1.36664 * 125.59834 * 299.99983 * 4 2 1 6 6 C 1.33973 * 108.05147 * 179.97438 * 5 4 2 7 7 C 1.41451 * 107.54868 * 0.16115 * 6 5 4 8 8 C 1.33974 * 107.54734 * 359.79928 * 7 6 5 9 9 C 1.50796 * 123.50507 * 179.74118 * 7 6 5 10 10 H 1.08997 * 109.72994 * 223.76344 * 9 7 6 11 11 C 1.50699 * 109.77383 * 103.09931 * 9 7 6 12 12 H 1.08005 * 120.00151 * 295.56992 * 11 9 7 13 13 C 1.37879 * 119.99977 * 115.56972 * 11 9 7 14 14 N 1.31518 * 119.99980 * 173.32637 * 13 11 9 15 15 Si 1.86791 * 120.00146 * 353.33075 * 13 11 9 16 16 H 1.48497 * 109.47634 * 86.07312 * 15 13 11 17 17 H 1.48506 * 109.47423 * 206.07774 * 15 13 11 18 18 H 1.48500 * 109.47090 * 326.07257 * 15 13 11 19 19 C 1.53415 * 108.11837 * 343.42163 * 9 7 6 20 20 H 1.09005 * 109.41309 * 290.54704 * 19 9 7 21 21 C 1.53000 * 109.41263 * 170.76724 * 19 9 7 22 22 C 1.53006 * 109.82638 * 50.65754 * 19 9 7 23 23 C 1.50795 * 128.94720 * 180.21639 * 6 5 4 24 24 H 1.09005 * 109.47411 * 300.00371 * 1 2 3 25 25 H 1.09005 * 109.47447 * 60.00033 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46692 * 239.99461 * 2 1 3 28 28 H 1.08997 * 109.47436 * 59.99667 * 3 2 1 29 29 H 1.08999 * 109.47214 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46900 * 299.99819 * 3 2 1 31 31 H 1.07994 * 125.97507 * 359.92942 * 5 4 2 32 32 H 1.07997 * 125.97603 * 180.18715 * 8 7 6 33 33 H 0.96996 * 120.00373 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47607 * 59.99846 * 21 19 9 35 35 H 1.09001 * 109.47197 * 180.02562 * 21 19 9 36 36 H 1.09000 * 109.47033 * 299.99379 * 21 19 9 37 37 H 1.08996 * 109.40842 * 48.17523 * 22 19 9 38 38 H 1.08995 * 109.41507 * 167.96261 * 22 19 9 39 39 H 1.09001 * 109.72833 * 43.71087 * 23 6 5 40 40 H 1.08995 * 109.77792 * 283.04269 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7596 -0.3248 2.4873 6 6 2.3753 -1.1966 3.2971 7 6 3.0450 -2.1376 2.4804 8 6 2.8080 -1.8059 1.2042 9 6 3.8615 -3.2817 3.0266 10 1 4.7936 -3.3680 2.4682 11 6 3.0801 -4.5654 2.9134 12 1 2.1649 -4.6916 3.4728 13 6 3.5336 -5.5787 2.0957 14 7 2.9266 -6.7454 2.0960 15 14 5.0102 -5.2945 0.9875 16 1 6.2576 -5.5708 1.7443 17 1 4.9312 -6.2023 -0.1851 18 1 5.0157 -3.8843 0.5221 19 6 4.1661 -2.9891 4.5014 20 1 4.8647 -2.1550 4.5685 21 6 4.7915 -4.2273 5.1469 22 6 2.8734 -2.6302 5.2371 23 6 2.3982 -1.2371 4.8043 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.1637 0.5198 2.8001 32 1 3.1763 -2.3287 0.3340 33 1 3.2453 -7.4581 1.5205 34 1 5.7159 -4.4801 4.6276 35 1 5.0080 -4.0206 6.1950 36 1 4.0958 -5.0635 5.0781 37 1 2.1049 -3.3654 4.9986 38 1 3.0553 -2.6333 6.3117 39 1 1.3965 -1.0529 5.1926 40 1 3.0846 -0.4799 5.1832 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = 10.761502 kcal Electronic energy + Delta-G solvation = -18747.647956 eV Core-core repulsion = 16140.549173 eV Total energy + Delta-G solvation = -2607.098782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18513 -38.54941 -35.74389 -34.53756 -32.62513 -30.98754 -28.86689 -28.15677 -27.95014 -25.38726 -24.18872 -21.87975 -21.15953 -20.39889 -19.58068 -18.14326 -17.55006 -16.17927 -15.79854 -15.47400 -15.36247 -14.89543 -14.58713 -14.48435 -14.28636 -14.13716 -13.54404 -13.38316 -13.16783 -13.01494 -12.80723 -12.74456 -12.55713 -12.36877 -12.13605 -12.07081 -11.92584 -11.83651 -11.71788 -11.15685 -10.83425 -10.62371 -10.59266 -8.79269 -8.67876 -8.18218 -6.13414 1.32836 1.34400 1.45565 1.61269 2.25902 2.37405 2.40841 3.21040 3.72382 4.06569 4.13945 4.17521 4.25877 4.26506 4.36699 4.51197 4.67645 4.68367 4.80399 4.83750 4.88476 4.90106 4.94393 5.00704 5.02564 5.13874 5.19335 5.26648 5.30231 5.33931 5.38617 5.51660 5.59120 5.66085 5.84269 5.96798 5.98104 6.38922 6.53454 6.60896 6.86846 6.90496 7.46670 8.99459 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.008995 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.593342 B = 3112.054010 C = 3945.972220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 C -0.151 4.151 4 N -0.451 5.451 5 C -0.003 4.003 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.045 4.045 9 C 0.075 3.925 10 H 0.024 0.976 11 C -0.462 4.462 12 H 0.029 0.971 13 C 0.011 3.989 14 N -0.956 5.956 15 Si 0.930 3.070 16 H -0.269 1.269 17 H -0.294 1.294 18 H -0.252 1.252 19 C -0.074 4.074 20 H 0.057 0.943 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.033 4.033 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.138 0.862 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 17.732 -1.745 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 C -0.208 4.208 4 N -0.130 5.130 5 C -0.132 4.132 6 C -0.205 4.205 7 C -0.154 4.154 8 C -0.173 4.173 9 C 0.056 3.944 10 H 0.042 0.958 11 C -0.500 4.500 12 H 0.048 0.952 13 C -0.184 4.184 14 N -0.598 5.598 15 Si 0.756 3.244 16 H -0.195 1.195 17 H -0.220 1.220 18 H -0.176 1.176 19 C -0.093 4.093 20 H 0.076 0.924 21 C -0.185 4.185 22 C -0.137 4.137 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.439 17.742 -2.159 17.931 hybrid contribution 0.502 -1.027 -0.819 1.406 sum -0.938 16.715 -2.978 17.004 Atomic orbital electron populations 1.22132 0.92815 1.02108 1.04192 1.21602 0.95944 0.94607 0.85903 1.22101 1.01201 0.93346 1.04172 1.44387 1.40012 1.22332 1.06235 1.21351 1.06517 1.02887 0.82437 1.19711 1.05769 0.98874 0.96151 1.20061 1.04096 0.98268 0.92926 1.21136 1.04075 0.93870 0.98232 1.17811 0.92904 0.90597 0.93122 0.95815 1.20944 1.07664 0.97462 1.23969 0.95236 1.25761 0.99523 0.94648 0.98475 1.70058 1.44134 1.04149 1.41483 0.85998 0.80754 0.78525 0.79155 1.19462 1.22034 1.17627 1.21092 0.96352 0.96310 0.95569 0.92417 1.21653 0.99319 0.98428 0.99110 1.21445 0.96891 0.96564 0.98750 1.19953 1.00846 0.96505 0.89779 0.91402 0.88336 0.94071 0.89120 0.91380 0.93128 0.88508 0.80108 0.84418 0.93116 0.94702 0.91960 0.94275 0.94822 0.91234 0.91114 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.24 71.98 0.66 -2.40 16 2 C 0.12 2.81 3.55 44.99 0.16 2.97 16 3 C -0.15 -2.61 9.24 71.98 0.66 -1.95 16 4 N -0.45 -14.89 2.63 -502.97 -1.32 -16.21 16 5 C 0.00 -0.09 10.33 82.97 0.86 0.77 16 6 C -0.20 -7.59 5.92 -20.01 -0.12 -7.70 16 7 C -0.15 -6.63 5.17 -20.01 -0.10 -6.73 16 8 C -0.05 -1.91 11.36 82.97 0.94 -0.97 16 9 C 0.08 3.68 2.18 -12.12 -0.03 3.65 16 10 H 0.02 1.19 4.89 -2.39 -0.01 1.18 16 11 C -0.46 -26.79 6.80 25.60 0.17 -26.62 16 12 H 0.03 1.93 7.00 -2.91 -0.02 1.91 16 13 C 0.01 0.65 5.47 84.65 0.46 1.11 16 14 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 15 Si 0.93 46.13 26.94 68.60 1.85 47.98 16 16 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 18 H -0.25 -11.79 6.82 99.48 0.68 -11.11 16 19 C -0.07 -3.12 2.43 -10.65 -0.03 -3.15 16 20 H 0.06 2.21 8.10 -2.38 -0.02 2.19 16 21 C -0.13 -5.31 8.77 71.98 0.63 -4.68 16 22 C -0.10 -3.79 5.14 30.74 0.16 -3.64 16 23 C -0.03 -1.10 6.30 30.02 0.19 -0.92 16 24 H 0.07 1.26 7.92 -2.38 -0.02 1.24 16 25 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 28 H 0.07 1.11 7.92 -2.39 -0.02 1.10 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 33 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.88 7.00 -2.39 -0.02 1.86 16 37 H 0.03 1.53 6.64 -2.39 -0.02 1.51 16 38 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.24 311.62 6.41 -63.83 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.96 Total: 15.59 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 4.63 Total: -50.23 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.02 Total: -77.16 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.85 Total: 47.98 kcal Total: -70.24 6.41 -63.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.592 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds