Wall clock time and date at job start Mon Mar 30 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46930 * 2 1 4 4 N 1.46494 * 109.47218 * 119.99919 * 2 1 3 5 5 C 1.36655 * 125.60572 * 300.02185 * 4 2 1 6 6 C 1.33977 * 108.05847 * 180.02562 * 5 4 2 7 7 C 1.41455 * 107.54476 * 359.84403 * 6 5 4 8 8 C 1.33974 * 107.54548 * 0.19734 * 7 6 5 9 9 C 1.50791 * 123.50443 * 180.26471 * 7 6 5 10 10 H 1.09000 * 109.73145 * 256.83168 * 9 7 6 11 11 C 1.50701 * 109.77083 * 136.16390 * 9 7 6 12 12 H 1.07999 * 120.00222 * 276.52103 * 11 9 7 13 13 C 1.37883 * 120.00012 * 96.52656 * 11 9 7 14 14 N 1.31513 * 119.99560 * 184.65744 * 13 11 9 15 15 Si 1.86803 * 119.99801 * 4.65149 * 13 11 9 16 16 H 1.48504 * 109.46398 * 85.33856 * 15 13 11 17 17 H 1.48498 * 109.46787 * 205.33504 * 15 13 11 18 18 H 1.48491 * 109.47464 * 325.33770 * 15 13 11 19 19 C 1.53422 * 108.11997 * 16.48863 * 9 7 6 20 20 H 1.08995 * 109.41514 * 69.39110 * 19 9 7 21 21 C 1.52995 * 109.41343 * 189.25524 * 19 9 7 22 22 C 1.53016 * 109.81278 * 309.35590 * 19 9 7 23 23 C 1.50797 * 128.94761 * 179.63383 * 6 5 4 24 24 H 1.09003 * 109.46665 * 300.00001 * 1 2 3 25 25 H 1.08992 * 109.47245 * 59.99825 * 1 2 3 26 26 H 1.08992 * 109.46804 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47133 * 240.00467 * 2 1 3 28 28 H 1.09003 * 109.46742 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46908 * 300.00284 * 3 2 1 30 30 H 1.08996 * 109.46831 * 60.00282 * 3 2 1 31 31 H 1.08003 * 125.97072 * 0.08659 * 5 4 2 32 32 H 1.07995 * 125.97538 * 179.86705 * 8 7 6 33 33 H 0.97005 * 119.99042 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47654 * 59.99678 * 21 19 9 35 35 H 1.09004 * 109.47195 * 299.99240 * 21 19 9 36 36 H 1.09007 * 109.47259 * 179.97438 * 21 19 9 37 37 H 1.09003 * 109.40985 * 192.06011 * 22 19 9 38 38 H 1.08996 * 109.41521 * 311.85121 * 22 19 9 39 39 H 1.08997 * 109.73265 * 316.38070 * 23 6 5 40 40 H 1.09003 * 109.73038 * 77.01649 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7595 -0.3251 2.4872 6 6 2.3763 -1.1962 3.2970 7 6 3.0409 -2.1408 2.4803 8 6 2.8071 -1.8066 1.2041 9 6 3.8475 -3.2918 3.0263 10 1 4.9111 -3.0679 2.9433 11 6 3.5303 -4.5475 2.2557 12 1 2.6649 -5.1379 2.5180 13 6 4.3450 -4.9426 1.2158 14 7 4.0188 -5.9862 0.4850 15 14 5.9119 -3.9955 0.8452 16 1 7.0122 -4.5040 1.7031 17 1 6.2738 -4.1771 -0.5835 18 1 5.6953 -2.5526 1.1214 19 6 3.4714 -3.4806 4.5017 20 1 2.4519 -3.8598 4.5700 21 6 4.4310 -4.4824 5.1469 22 6 3.5648 -2.1415 5.2361 23 6 2.4091 -1.2297 4.8042 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1613 0.5179 2.8001 32 1 3.1769 -2.3282 0.3338 33 1 4.5919 -6.2638 -0.2468 34 1 5.4513 -4.1053 5.0769 35 1 4.3607 -5.4387 4.6283 36 1 4.1649 -4.6170 6.1954 37 1 3.5085 -2.3133 6.3111 38 1 4.5137 -1.6620 4.9961 39 1 2.5697 -0.2235 5.1913 40 1 1.4666 -1.6240 5.1842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:24 Heat of formation + Delta-G solvation = 8.807079 kcal Electronic energy + Delta-G solvation = -18759.365291 eV Core-core repulsion = 16152.181758 eV Total energy + Delta-G solvation = -2607.183532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18898 -38.47592 -35.70804 -34.76549 -32.65560 -31.04646 -28.88184 -28.17013 -27.89893 -25.42202 -24.06523 -21.76696 -21.30659 -20.35404 -19.14721 -18.86892 -17.48882 -16.36484 -15.72465 -15.46632 -15.18555 -14.90740 -14.68046 -14.49308 -14.13525 -14.07060 -13.83261 -13.35605 -13.17491 -13.00646 -12.82907 -12.71999 -12.54242 -12.35383 -12.20468 -12.10481 -11.96823 -11.86958 -11.55919 -11.27952 -11.04486 -10.65946 -10.57556 -8.80487 -8.67756 -8.22593 -6.20178 1.30469 1.32697 1.46308 1.62051 2.25057 2.35889 2.38568 3.16954 3.71139 4.05094 4.13358 4.16554 4.22554 4.27170 4.35140 4.52895 4.65344 4.67465 4.77061 4.82144 4.85061 4.88512 4.92561 4.98680 5.10146 5.12119 5.23001 5.25226 5.26869 5.30253 5.33591 5.42529 5.58106 5.66823 5.79324 5.92666 5.98632 6.41405 6.47117 6.59630 6.84464 6.91616 7.42412 8.95318 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.009942 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.790105 B = 2815.562092 C = 3813.890549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.118 3.882 3 C -0.150 4.150 4 N -0.454 5.454 5 C -0.003 4.003 6 C -0.201 4.201 7 C -0.153 4.153 8 C -0.032 4.032 9 C 0.081 3.919 10 H 0.024 0.976 11 C -0.480 4.480 12 H 0.024 0.976 13 C 0.018 3.982 14 N -0.954 5.954 15 Si 0.926 3.074 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.251 1.251 19 C -0.074 4.074 20 H 0.040 0.960 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.034 4.034 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.185 0.815 32 H 0.127 0.873 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 16.777 3.476 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 C -0.208 4.208 4 N -0.132 5.132 5 C -0.132 4.132 6 C -0.208 4.208 7 C -0.160 4.160 8 C -0.160 4.160 9 C 0.061 3.939 10 H 0.042 0.958 11 C -0.518 4.518 12 H 0.042 0.958 13 C -0.177 4.177 14 N -0.596 5.596 15 Si 0.751 3.249 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.175 1.175 19 C -0.093 4.093 20 H 0.059 0.941 21 C -0.189 4.189 22 C -0.142 4.142 23 C -0.072 4.072 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.202 0.798 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.261 16.852 3.001 17.639 hybrid contribution 0.766 -0.721 -0.924 1.400 sum -3.495 16.131 2.076 16.635 Atomic orbital electron populations 1.22110 0.92425 1.02149 1.04316 1.21609 0.96243 0.94578 0.85870 1.22103 1.01035 0.93311 1.04333 1.44431 1.40017 1.22372 1.06415 1.21403 1.06554 1.03020 0.82222 1.19801 1.05889 0.98750 0.96409 1.20167 1.04335 0.98669 0.92848 1.21049 1.03408 0.93071 0.98423 1.17755 0.93198 0.90064 0.92851 0.95790 1.21102 1.09600 1.06979 1.14125 0.95779 1.25701 1.00723 0.95684 0.95625 1.70065 1.39774 1.28691 1.21085 0.86048 0.80965 0.80901 0.76948 1.19354 1.21700 1.17500 1.21041 0.98102 0.95395 0.94722 0.94148 1.21686 0.98791 0.98819 0.99654 1.21584 0.98399 0.94660 0.99518 1.19970 0.98137 0.99801 0.89280 0.91031 0.88384 0.94052 0.89770 0.93459 0.88460 0.91016 0.79817 0.85570 0.92979 0.93415 0.94736 0.91440 0.90257 0.93017 0.89796 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.24 71.98 0.66 -2.48 16 2 C 0.12 3.01 3.55 45.00 0.16 3.17 16 3 C -0.15 -2.86 9.24 71.99 0.67 -2.19 16 4 N -0.45 -15.79 2.63 -502.95 -1.32 -17.11 16 5 C 0.00 -0.10 10.33 82.97 0.86 0.76 16 6 C -0.20 -7.61 5.92 -20.01 -0.12 -7.73 16 7 C -0.15 -7.10 5.43 -20.01 -0.11 -7.21 16 8 C -0.03 -1.42 10.94 82.97 0.91 -0.52 16 9 C 0.08 3.99 1.57 -12.12 -0.02 3.97 16 10 H 0.02 1.23 5.26 -2.39 -0.01 1.21 16 11 C -0.48 -28.34 7.78 25.60 0.20 -28.14 16 12 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 13 C 0.02 1.09 5.47 84.66 0.46 1.56 16 14 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 15 Si 0.93 46.48 26.74 68.60 1.83 48.31 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.25 -12.17 6.79 99.48 0.68 -11.50 16 19 C -0.07 -3.09 2.09 -10.65 -0.02 -3.11 16 20 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 21 C -0.13 -5.14 9.01 71.98 0.65 -4.49 16 22 C -0.10 -3.43 5.17 30.74 0.16 -3.27 16 23 C -0.03 -1.06 6.29 30.02 0.19 -0.87 16 24 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 31 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.13 6.17 7.79 -2.91 -0.02 6.15 16 33 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.03 1.52 7.56 -2.38 -0.02 1.50 16 36 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -71.42 314.68 6.40 -65.02 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.95 Total: 15.29 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 4.64 Total: -50.56 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.02 Total: -78.06 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.83 Total: 48.31 kcal Total: -71.42 6.40 -65.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.827 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds