Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46929 * 2 1 4 4 N 1.46496 * 109.47033 * 119.99661 * 2 1 3 5 5 C 1.36662 * 125.60234 * 300.03002 * 4 2 1 6 6 C 1.33980 * 108.05213 * 179.90634 * 5 4 2 7 7 C 1.41454 * 107.54615 * 0.13697 * 6 5 4 8 8 C 1.33970 * 107.54566 * 359.59682 * 7 6 5 9 9 C 1.50796 * 123.50234 * 179.67420 * 7 6 5 10 10 H 1.09006 * 109.72535 * 103.25645 * 9 7 6 11 11 C 1.50701 * 109.73339 * 223.88900 * 9 7 6 12 12 H 1.08002 * 119.99358 * 57.00953 * 11 9 7 13 13 C 1.37874 * 120.00551 * 237.00703 * 11 9 7 14 14 N 1.31512 * 119.99786 * 6.44220 * 13 11 9 15 15 Si 1.86800 * 120.00217 * 186.44474 * 13 11 9 16 16 H 1.48504 * 109.46929 * 89.99642 * 15 13 11 17 17 H 1.48491 * 109.47069 * 209.99740 * 15 13 11 18 18 H 1.48501 * 109.47179 * 330.00099 * 15 13 11 19 19 C 1.53413 * 108.12014 * 343.55297 * 9 7 6 20 20 H 1.08999 * 109.41264 * 290.52295 * 19 9 7 21 21 C 1.53009 * 109.41353 * 170.73893 * 19 9 7 22 22 C 1.53011 * 109.81877 * 50.63217 * 19 9 7 23 23 C 1.50795 * 128.94339 * 180.34024 * 6 5 4 24 24 H 1.08994 * 109.47683 * 299.99888 * 1 2 3 25 25 H 1.08999 * 109.47319 * 60.00263 * 1 2 3 26 26 H 1.09007 * 109.46717 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47218 * 239.99852 * 2 1 3 28 28 H 1.09003 * 109.46930 * 59.99437 * 3 2 1 29 29 H 1.08994 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46906 * 299.99990 * 3 2 1 31 31 H 1.07993 * 125.97183 * 359.92817 * 5 4 2 32 32 H 1.08008 * 125.97265 * 180.35894 * 8 7 6 33 33 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47185 * 59.99575 * 21 19 9 35 35 H 1.08994 * 109.47216 * 179.97438 * 21 19 9 36 36 H 1.09005 * 109.46604 * 299.99712 * 21 19 9 37 37 H 1.08998 * 109.41290 * 48.14534 * 22 19 9 38 38 H 1.09000 * 109.40776 * 167.93152 * 22 19 9 39 39 H 1.08997 * 109.73215 * 282.97062 * 23 6 5 40 40 H 1.08999 * 109.73563 * 43.65923 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7592 -0.3250 2.4873 6 6 2.3739 -1.1976 3.2971 7 6 3.0429 -2.1391 2.4804 8 6 2.8028 -1.8095 1.2043 9 6 3.8594 -3.2832 3.0265 10 1 3.2943 -4.2116 2.9424 11 6 5.1491 -3.4012 2.2560 12 1 5.8215 -2.5582 2.1965 13 6 5.4707 -4.5853 1.6271 14 7 4.5985 -5.5689 1.5916 15 14 7.1453 -4.7924 0.8257 16 1 8.1030 -5.3465 1.8163 17 1 7.0311 -5.7225 -0.3262 18 1 7.6331 -3.4729 0.3502 19 6 4.1621 -2.9918 4.5020 20 1 4.8604 -2.1577 4.5706 21 6 4.7868 -4.2306 5.1473 22 6 2.8682 -2.6337 5.2361 23 6 2.3939 -1.2401 4.8043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.1629 0.5193 2.8001 32 1 3.1678 -2.3347 0.3339 33 1 4.8249 -6.4021 1.1495 34 1 5.7118 -4.4828 4.6290 35 1 5.0027 -4.0244 6.1956 36 1 4.0911 -5.0668 5.0769 37 1 2.1000 -3.3685 4.9956 38 1 3.0486 -2.6381 6.3111 39 1 3.0802 -0.4836 5.1847 40 1 1.3915 -1.0562 5.1910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = 22.886832 kcal Electronic energy + Delta-G solvation = -18606.337299 eV Core-core repulsion = 15999.764310 eV Total energy + Delta-G solvation = -2606.572989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57901 -36.78104 -34.36766 -32.74958 -30.62063 -29.19583 -27.27435 -27.24597 -25.82322 -23.66713 -22.62123 -20.42252 -19.49054 -18.79576 -17.31288 -16.41825 -15.94288 -14.49950 -14.39078 -14.19537 -13.52767 -13.42206 -12.99477 -12.63885 -12.62565 -12.41669 -12.12901 -11.96011 -11.85202 -11.46395 -11.16401 -11.02166 -10.85978 -10.84426 -10.80781 -10.61193 -10.39535 -10.01308 -9.71491 -9.40972 -9.02254 -8.59096 -8.36773 -7.25118 -6.93032 -5.87862 -3.88781 3.17799 3.35303 3.42527 3.45968 3.64490 4.15233 4.54607 4.77340 5.08844 5.18043 5.39136 5.50415 5.51905 5.71408 5.71659 5.85048 5.89641 5.92036 5.96528 6.07311 6.19249 6.29532 6.42228 6.50736 6.56022 6.61971 6.82173 6.89552 6.94864 7.08022 7.22160 7.38623 7.47335 7.59506 7.77805 7.96788 8.07821 8.19723 8.33902 8.42135 8.68989 9.23502 9.71754 11.18886 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.008463 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.773683 B = 3307.821059 C = 4367.946149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.461 5.461 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.112 4.112 8 C -0.010 4.010 9 C 0.097 3.903 10 H 0.073 0.927 11 C -0.492 4.492 12 H 0.050 0.950 13 C 0.066 3.934 14 N -0.894 5.894 15 Si 0.881 3.119 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.076 4.076 20 H 0.049 0.951 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.037 4.037 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 9.945 -0.174 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.217 4.217 4 N -0.141 5.141 5 C -0.156 4.156 6 C -0.188 4.188 7 C -0.118 4.118 8 C -0.135 4.135 9 C 0.078 3.922 10 H 0.091 0.909 11 C -0.530 4.530 12 H 0.068 0.932 13 C -0.135 4.135 14 N -0.533 5.533 15 Si 0.709 3.291 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.095 4.095 20 H 0.067 0.933 21 C -0.183 4.183 22 C -0.147 4.147 23 C -0.075 4.075 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.941 9.919 -0.567 12.119 hybrid contribution 0.938 -0.084 -0.609 1.122 sum -6.003 9.835 -1.176 11.582 Atomic orbital electron populations 1.22155 0.94589 1.02815 1.02191 1.21158 0.94479 0.93489 0.87869 1.22150 1.02157 0.95262 1.02172 1.44154 1.41952 1.23593 1.04445 1.20784 1.08617 1.03039 0.83154 1.19508 1.05096 0.99423 0.94744 1.20284 1.00468 0.99530 0.91477 1.21281 1.01508 0.91250 0.99499 1.17650 0.93680 0.92125 0.88730 0.90898 1.21020 1.03859 0.97198 1.30927 0.93207 1.24928 0.96273 0.96337 0.95967 1.69918 1.33784 1.04979 1.44578 0.86779 0.85462 0.77845 0.79011 1.20730 1.21522 1.20078 1.21235 0.94051 0.96487 0.97762 0.93280 1.21611 1.01551 0.98117 0.97054 1.21645 0.99097 0.96034 0.97974 1.19899 0.99004 0.97326 0.91259 0.92136 0.91594 0.91892 0.89097 0.92150 0.91865 0.91592 0.84237 0.82916 0.93179 0.92123 0.95721 0.93803 0.92738 0.93844 0.92782 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.24 37.16 0.34 -1.48 16 2 C 0.13 1.80 3.55 -67.93 -0.24 1.56 16 3 C -0.16 -1.84 9.24 37.16 0.34 -1.50 16 4 N -0.46 -8.30 2.63 -110.32 -0.29 -8.59 16 5 C -0.03 -0.51 10.33 -16.90 -0.17 -0.69 16 6 C -0.18 -3.69 5.92 -104.85 -0.62 -4.31 16 7 C -0.11 -2.62 5.43 -104.85 -0.57 -3.19 16 8 C -0.01 -0.22 10.94 -16.90 -0.18 -0.40 16 9 C 0.10 2.46 2.23 -92.66 -0.21 2.26 16 10 H 0.07 2.09 6.93 -51.93 -0.36 1.73 16 11 C -0.49 -13.45 7.23 -34.44 -0.25 -13.70 16 12 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 13 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 14 N -0.89 -25.66 12.63 55.43 0.70 -24.96 16 15 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.08 -1.70 2.09 -90.40 -0.19 -1.89 16 20 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 21 C -0.13 -2.72 9.01 37.16 0.33 -2.38 16 22 C -0.11 -2.12 5.17 -26.51 -0.14 -2.25 16 23 C -0.04 -0.67 6.30 -27.62 -0.17 -0.85 16 24 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 28 H 0.06 0.69 7.92 -51.93 -0.41 0.27 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.15 3.45 8.06 -52.48 -0.42 3.03 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 1.42 7.56 -51.93 -0.39 1.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -29.27 318.27 -8.66 -37.93 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.03 Total: 1.54 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -1.82 Total: -27.09 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.41 Total: -33.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.27 -8.66 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.815 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds