Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46929 * 2 1 4 4 N 1.46496 * 109.47033 * 119.99661 * 2 1 3 5 5 C 1.36662 * 125.60234 * 300.03002 * 4 2 1 6 6 C 1.33980 * 108.05213 * 179.90634 * 5 4 2 7 7 C 1.41454 * 107.54615 * 0.13697 * 6 5 4 8 8 C 1.33970 * 107.54566 * 359.59682 * 7 6 5 9 9 C 1.50796 * 123.50234 * 179.67420 * 7 6 5 10 10 H 1.09006 * 109.72535 * 103.25645 * 9 7 6 11 11 C 1.50701 * 109.73339 * 223.88900 * 9 7 6 12 12 H 1.08002 * 119.99358 * 57.00953 * 11 9 7 13 13 C 1.37874 * 120.00551 * 237.00703 * 11 9 7 14 14 N 1.31512 * 119.99786 * 6.44220 * 13 11 9 15 15 Si 1.86800 * 120.00217 * 186.44474 * 13 11 9 16 16 H 1.48504 * 109.46929 * 89.99642 * 15 13 11 17 17 H 1.48491 * 109.47069 * 209.99740 * 15 13 11 18 18 H 1.48501 * 109.47179 * 330.00099 * 15 13 11 19 19 C 1.53413 * 108.12014 * 343.55297 * 9 7 6 20 20 H 1.08999 * 109.41264 * 290.52295 * 19 9 7 21 21 C 1.53009 * 109.41353 * 170.73893 * 19 9 7 22 22 C 1.53011 * 109.81877 * 50.63217 * 19 9 7 23 23 C 1.50795 * 128.94339 * 180.34024 * 6 5 4 24 24 H 1.08994 * 109.47683 * 299.99888 * 1 2 3 25 25 H 1.08999 * 109.47319 * 60.00263 * 1 2 3 26 26 H 1.09007 * 109.46717 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47218 * 239.99852 * 2 1 3 28 28 H 1.09003 * 109.46930 * 59.99437 * 3 2 1 29 29 H 1.08994 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46906 * 299.99990 * 3 2 1 31 31 H 1.07993 * 125.97183 * 359.92817 * 5 4 2 32 32 H 1.08008 * 125.97265 * 180.35894 * 8 7 6 33 33 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47185 * 59.99575 * 21 19 9 35 35 H 1.08994 * 109.47216 * 179.97438 * 21 19 9 36 36 H 1.09005 * 109.46604 * 299.99712 * 21 19 9 37 37 H 1.08998 * 109.41290 * 48.14534 * 22 19 9 38 38 H 1.09000 * 109.40776 * 167.93152 * 22 19 9 39 39 H 1.08997 * 109.73215 * 282.97062 * 23 6 5 40 40 H 1.08999 * 109.73563 * 43.65923 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7592 -0.3250 2.4873 6 6 2.3739 -1.1976 3.2971 7 6 3.0429 -2.1391 2.4804 8 6 2.8028 -1.8095 1.2043 9 6 3.8594 -3.2832 3.0265 10 1 3.2943 -4.2116 2.9424 11 6 5.1491 -3.4012 2.2560 12 1 5.8215 -2.5582 2.1965 13 6 5.4707 -4.5853 1.6271 14 7 4.5985 -5.5689 1.5916 15 14 7.1453 -4.7924 0.8257 16 1 8.1030 -5.3465 1.8163 17 1 7.0311 -5.7225 -0.3262 18 1 7.6331 -3.4729 0.3502 19 6 4.1621 -2.9918 4.5020 20 1 4.8604 -2.1577 4.5706 21 6 4.7868 -4.2306 5.1473 22 6 2.8682 -2.6337 5.2361 23 6 2.3939 -1.2401 4.8043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.1629 0.5193 2.8001 32 1 3.1678 -2.3347 0.3339 33 1 4.8249 -6.4021 1.1495 34 1 5.7118 -4.4828 4.6290 35 1 5.0027 -4.0244 6.1956 36 1 4.0911 -5.0668 5.0769 37 1 2.1000 -3.3685 4.9956 38 1 3.0486 -2.6381 6.3111 39 1 3.0802 -0.4836 5.1847 40 1 1.3915 -1.0562 5.1910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = 9.037627 kcal Electronic energy + Delta-G solvation = -18606.937845 eV Core-core repulsion = 15999.764310 eV Total energy + Delta-G solvation = -2607.173535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09502 -38.35743 -35.68245 -34.69480 -32.33847 -30.82587 -28.81060 -28.14458 -27.67957 -25.52281 -24.11078 -21.83432 -21.17105 -20.32135 -18.94732 -18.39178 -17.43034 -16.47072 -15.68325 -15.40568 -15.06682 -14.80990 -14.73048 -14.24112 -14.03259 -13.78713 -13.71715 -13.28484 -13.14931 -12.94233 -12.82522 -12.69358 -12.47297 -12.44372 -12.13491 -12.03503 -11.91003 -11.83317 -11.57707 -11.13882 -11.01194 -10.46204 -10.42889 -8.75862 -8.63143 -7.99663 -6.07871 1.38383 1.39924 1.49115 1.67798 2.30790 2.39134 2.55003 3.25245 3.74964 4.08538 4.17398 4.25049 4.29509 4.32317 4.43187 4.60523 4.69495 4.70994 4.80582 4.84558 4.91265 4.93658 4.98521 5.04714 5.14010 5.22869 5.27726 5.32130 5.35402 5.45340 5.52266 5.56613 5.66902 5.75685 5.91244 6.06696 6.08455 6.50628 6.55568 6.74517 6.93763 7.12003 7.54516 9.04856 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.008463 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.773683 B = 3307.821059 C = 4367.946149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.453 5.453 5 C -0.006 4.006 6 C -0.207 4.207 7 C -0.149 4.149 8 C -0.031 4.031 9 C 0.097 3.903 10 H 0.029 0.971 11 C -0.497 4.497 12 H 0.035 0.965 13 C 0.020 3.980 14 N -0.925 5.925 15 Si 0.939 3.061 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.075 4.075 20 H 0.040 0.960 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.032 4.032 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.182 0.818 32 H 0.131 0.869 33 H 0.258 0.742 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 12.537 0.334 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 C -0.209 4.209 4 N -0.131 5.131 5 C -0.135 4.135 6 C -0.214 4.214 7 C -0.155 4.155 8 C -0.159 4.159 9 C 0.078 3.922 10 H 0.047 0.953 11 C -0.535 4.535 12 H 0.053 0.947 13 C -0.177 4.177 14 N -0.565 5.565 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.094 4.094 20 H 0.058 0.942 21 C -0.176 4.176 22 C -0.141 4.141 23 C -0.070 4.070 24 H 0.087 0.913 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.199 0.801 32 H 0.149 0.851 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.012 12.532 -0.075 14.875 hybrid contribution 1.228 -0.841 -0.829 1.704 sum -6.784 11.691 -0.904 13.547 Atomic orbital electron populations 1.22109 0.92333 1.02297 1.04180 1.21582 0.96217 0.94346 0.85959 1.22106 1.00927 0.93719 1.04172 1.44401 1.40389 1.22201 1.06156 1.21336 1.06866 1.02792 0.82474 1.19816 1.05845 0.99496 0.96245 1.20285 1.01996 1.00310 0.92944 1.21049 1.03190 0.93173 0.98472 1.17479 0.92528 0.91315 0.90888 0.95293 1.21187 1.04553 0.96711 1.31068 0.94669 1.25558 0.99372 0.96093 0.96720 1.70053 1.35394 1.05358 1.45731 0.85859 0.81620 0.77764 0.78251 1.20102 1.21081 1.19787 1.21138 0.95713 0.96220 0.96308 0.94176 1.21533 0.99752 0.97540 0.98788 1.21562 0.96673 0.96716 0.99177 1.19934 1.00872 0.96483 0.89692 0.91291 0.88447 0.93656 0.89485 0.91315 0.93743 0.88420 0.80119 0.85094 0.93305 0.94901 0.92181 0.95017 0.94145 0.90915 0.91596 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.24 71.98 0.66 -2.32 16 2 C 0.12 3.02 3.55 44.99 0.16 3.18 16 3 C -0.15 -3.02 9.24 71.98 0.66 -2.36 16 4 N -0.45 -15.87 2.63 -502.95 -1.32 -17.19 16 5 C -0.01 -0.19 10.33 82.97 0.86 0.67 16 6 C -0.21 -8.24 5.92 -20.01 -0.12 -8.36 16 7 C -0.15 -7.19 5.43 -20.01 -0.11 -7.30 16 8 C -0.03 -1.43 10.94 82.97 0.91 -0.52 16 9 C 0.10 5.17 2.23 -12.12 -0.03 5.14 16 10 H 0.03 1.77 6.93 -2.38 -0.02 1.75 16 11 C -0.50 -28.50 7.23 25.60 0.19 -28.31 16 12 H 0.03 2.07 7.82 -2.91 -0.02 2.04 16 13 C 0.02 1.16 5.45 84.65 0.46 1.62 16 14 N -0.92 -55.72 12.63 21.45 0.27 -55.45 16 15 Si 0.94 45.32 29.54 68.60 2.03 47.35 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 19 C -0.07 -3.39 2.09 -10.65 -0.02 -3.41 16 20 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 21 C -0.12 -5.21 9.01 71.99 0.65 -4.56 16 22 C -0.10 -3.87 5.17 30.74 0.16 -3.71 16 23 C -0.03 -1.09 6.30 30.02 0.19 -0.90 16 24 H 0.07 1.26 7.92 -2.39 -0.02 1.24 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.09 2.23 8.06 -2.39 -0.02 2.21 16 28 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.18 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.13 6.38 8.06 -2.91 -0.02 6.35 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.03 1.57 7.56 -2.39 -0.02 1.55 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 36 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -67.10 318.27 6.57 -60.53 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.98 Total: 15.90 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 4.62 Total: -51.14 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.05 Total: -72.64 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.10 6.57 -60.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.570 kcal (2) G-P(sol) polarization free energy of solvation -67.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds