Wall clock time and date at job start Mon Mar 30 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47612 * 2 1 4 4 C 1.52999 * 109.46804 * 64.99796 * 3 2 1 5 5 C 1.52998 * 109.47085 * 185.00112 * 4 3 2 6 6 C 1.50700 * 109.47355 * 184.99785 * 3 2 1 7 7 C 1.38251 * 119.99913 * 300.00439 * 6 3 2 8 8 C 1.38223 * 119.99605 * 180.02562 * 7 6 3 9 9 C 1.38251 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.38216 * 120.00055 * 359.96475 * 9 8 7 11 11 C 1.50693 * 119.99851 * 180.02562 * 10 9 8 12 12 H 1.09010 * 109.46918 * 199.99533 * 11 10 9 13 13 N 1.46898 * 109.47183 * 319.99295 * 11 10 9 14 14 C 1.50696 * 109.47459 * 79.99768 * 11 10 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38213 * 119.99624 * 120.20984 * 6 3 2 23 23 H 1.08995 * 109.46665 * 299.99976 * 1 2 3 24 24 H 1.09003 * 109.46747 * 59.99844 * 1 2 3 25 25 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47135 * 239.99713 * 2 1 3 27 27 H 1.09001 * 109.46921 * 120.00677 * 2 1 3 28 28 H 1.08994 * 109.46764 * 305.00200 * 3 2 1 29 29 H 1.09004 * 109.47503 * 305.00323 * 4 3 2 30 30 H 1.09007 * 109.47185 * 65.00449 * 4 3 2 31 31 H 1.08998 * 109.47388 * 60.00303 * 5 4 3 32 32 H 1.09006 * 109.47258 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47122 * 300.00444 * 5 4 3 34 34 H 1.07996 * 120.00651 * 359.97438 * 7 6 3 35 35 H 1.08000 * 119.99892 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00348 * 179.97438 * 9 8 7 37 37 H 1.00899 * 111.00188 * 296.04594 * 13 11 10 38 38 H 1.00896 * 111.00080 * 60.00784 * 13 11 10 39 39 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 40 40 H 1.08004 * 120.00591 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1264 1.3073 5 6 2.0355 3.6023 1.2559 6 6 3.5420 1.4442 -0.1238 7 6 4.3153 0.8164 0.8350 8 6 5.6929 0.8184 0.7216 9 6 6.2974 1.4478 -0.3506 10 6 5.5242 2.0744 -1.3098 11 6 6.1830 2.7599 -2.4789 12 1 5.4888 3.4763 -2.9184 13 7 7.3872 3.4641 -2.0185 14 6 6.5663 1.7327 -3.5128 15 1 6.3543 0.6879 -3.3404 16 6 7.1885 2.1268 -4.6784 17 7 7.4471 3.3991 -4.8882 18 14 7.6641 0.8534 -5.9598 19 1 9.0387 0.3637 -5.6843 20 1 6.7125 -0.2852 -5.9033 21 1 7.6195 1.4694 -7.3102 22 6 4.1464 2.0770 -1.1935 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6055 1.9814 -0.8418 29 1 0.5563 2.0470 1.4401 30 1 2.1409 1.6418 2.1427 31 1 1.5300 4.0869 0.4207 32 1 1.7475 4.0895 2.1875 33 1 3.1145 3.6817 1.1231 34 1 3.8432 0.3250 1.6728 35 1 6.2971 0.3284 1.4708 36 1 7.3737 1.4498 -0.4390 37 1 7.1498 4.2019 -1.3724 38 1 8.0469 2.8213 -1.6068 39 1 7.1997 4.0603 -4.2230 40 1 3.5425 2.5707 -1.9406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:26 Heat of formation + Delta-G solvation = -26.275080 kcal Electronic energy + Delta-G solvation = -18053.096767 eV Core-core repulsion = 15444.391958 eV Total energy + Delta-G solvation = -2608.704809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77309 -38.05286 -36.19539 -33.45542 -32.61727 -31.80119 -30.81871 -27.61046 -27.11072 -24.68471 -23.63220 -23.01791 -22.35413 -20.15851 -18.77880 -17.71795 -16.80752 -16.24131 -15.88349 -15.70265 -15.49640 -15.21371 -15.08589 -14.64213 -14.40133 -13.98649 -13.81398 -13.27690 -13.15470 -12.89336 -12.79526 -12.65061 -12.52208 -12.42946 -12.00364 -11.91500 -11.86603 -11.56217 -11.39790 -11.21260 -10.85429 -10.51121 -9.62643 -9.53174 -9.19431 -8.41458 -6.27703 0.53046 0.58391 1.52763 1.61492 1.78909 2.60087 2.93672 3.28621 3.70668 3.79750 4.09648 4.13500 4.17367 4.20239 4.29394 4.34846 4.39720 4.53454 4.58635 4.66686 4.72308 4.81316 4.90748 4.96438 5.02957 5.08916 5.16510 5.22141 5.25457 5.29244 5.35197 5.42795 5.49474 5.62743 5.77666 5.85763 5.91535 6.17841 6.23186 6.64992 6.74212 7.00968 7.63616 8.94238 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.005755 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.188578 B = 4864.125188 C = 5209.643733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.047 4.047 4 C -0.108 4.108 5 C -0.152 4.152 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.115 4.115 9 C -0.143 4.143 10 C -0.089 4.089 11 C 0.241 3.759 12 H 0.000 1.000 13 N -0.835 5.835 14 C -0.615 4.615 15 H 0.032 0.968 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 1.112 2.888 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.283 1.283 22 C -0.140 4.140 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.316 0.684 38 H 0.330 0.670 39 H 0.277 0.723 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 -5.576 14.716 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.065 4.065 4 C -0.145 4.145 5 C -0.210 4.210 6 C -0.064 4.064 7 C -0.150 4.150 8 C -0.133 4.133 9 C -0.161 4.161 10 C -0.092 4.092 11 C 0.131 3.869 12 H 0.018 0.982 13 N -0.363 5.363 14 C -0.653 4.653 15 H 0.051 0.949 16 C -0.215 4.215 17 N -0.554 5.554 18 Si 0.935 3.065 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.208 1.208 22 C -0.159 4.159 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.149 -5.525 12.466 17.614 hybrid contribution -0.585 0.246 1.910 2.013 sum -11.734 -5.279 14.376 19.294 Atomic orbital electron populations 1.21815 0.94269 1.02249 1.02319 1.21537 0.96902 0.94670 1.01925 1.20280 0.89444 0.97450 0.99348 1.21605 1.02047 0.94960 0.95852 1.21772 1.00482 0.96915 1.01802 1.19985 0.96381 0.96293 0.93766 1.21089 0.93198 1.01018 0.99698 1.21345 0.95567 0.98807 0.97547 1.20950 0.99479 1.00151 0.95529 1.21124 0.94647 0.97306 0.96081 1.18012 0.87571 0.91400 0.89869 0.98173 1.59220 1.15615 1.16084 1.45396 1.21971 1.45299 0.93120 1.04925 0.94943 1.27009 0.93400 1.00692 1.00385 1.70644 1.43870 1.02104 1.38747 0.83007 0.76800 0.72826 0.73843 1.20098 1.20443 1.20812 1.20968 0.93960 1.02286 0.98701 0.91103 0.93204 0.91931 0.93721 0.90781 0.91793 0.89651 0.91068 0.93319 0.91445 0.94763 0.83725 0.83914 0.87358 0.87265 0.85612 0.91114 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.67 71.98 0.70 -1.75 16 2 C -0.11 -2.36 5.14 30.59 0.16 -2.21 16 3 C -0.05 -1.13 2.04 -11.54 -0.02 -1.15 16 4 C -0.11 -2.07 5.16 30.59 0.16 -1.91 16 5 C -0.15 -3.30 9.73 71.98 0.70 -2.60 16 6 C -0.06 -2.00 3.76 -19.87 -0.07 -2.07 16 7 C -0.13 -3.72 8.71 22.27 0.19 -3.53 16 8 C -0.11 -3.54 10.05 22.27 0.22 -3.32 16 9 C -0.14 -5.51 9.29 22.27 0.21 -5.30 16 10 C -0.09 -3.94 4.88 -19.87 -0.10 -4.04 16 11 C 0.24 12.56 2.47 43.42 0.11 12.66 16 12 H 0.00 0.02 7.87 -2.38 -0.02 0.01 16 13 N -0.83 -40.12 7.62 -174.96 -1.33 -41.46 16 14 C -0.61 -35.76 8.70 25.60 0.22 -35.54 16 15 H 0.03 1.93 7.74 -2.91 -0.02 1.90 16 16 C -0.01 -0.67 5.39 84.65 0.46 -0.21 16 17 N -0.92 -57.42 13.50 21.45 0.29 -57.13 16 18 Si 1.11 52.16 29.90 68.60 2.05 54.21 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C -0.14 -5.59 9.29 22.27 0.21 -5.38 16 23 H 0.07 0.96 6.46 -2.39 -0.02 0.94 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.07 1.37 7.57 -2.39 -0.02 1.35 16 28 H 0.06 1.68 7.88 -2.39 -0.02 1.66 16 29 H 0.09 1.31 6.34 -2.39 -0.02 1.29 16 30 H 0.07 1.26 7.23 -2.38 -0.02 1.24 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.03 0.90 7.38 -2.39 -0.02 0.88 16 34 H 0.15 3.07 7.13 -2.91 -0.02 3.05 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.11 4.19 6.66 -2.91 -0.02 4.17 16 37 H 0.32 13.49 9.06 -89.69 -0.81 12.68 16 38 H 0.33 15.21 7.34 -89.70 -0.66 14.55 16 39 H 0.28 17.58 6.39 -92.71 -0.59 16.99 16 40 H 0.10 4.03 7.92 -2.91 -0.02 4.01 16 Total: -1.00 -66.93 318.38 3.87 -63.05 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.27 Total: 37.68 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 3.13 Total: -56.36 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -1.04 Total: -98.59 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -66.93 3.87 -63.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.780 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds