Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47284 * 65.00132 * 3 2 1 5 5 C 1.53002 * 109.46953 * 184.99846 * 4 3 2 6 6 C 1.50708 * 109.46666 * 184.99932 * 3 2 1 7 7 C 1.38254 * 119.99823 * 300.01969 * 6 3 2 8 8 C 1.38216 * 119.99725 * 179.97438 * 7 6 3 9 9 C 1.38256 * 120.00092 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99920 * 359.73680 * 9 8 7 11 11 C 1.50698 * 120.00309 * 180.28024 * 10 9 8 12 12 H 1.09001 * 109.47528 * 160.24188 * 11 10 9 13 13 N 1.46896 * 109.47037 * 40.23483 * 11 10 9 14 14 C 1.50701 * 109.46935 * 280.23873 * 11 10 9 15 15 H 1.07993 * 120.00367 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99653 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00338 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99710 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47328 * 59.99475 * 18 16 14 20 20 H 1.48496 * 109.46741 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46613 * 299.99606 * 18 16 14 22 22 C 1.38212 * 119.99857 * 120.00373 * 6 3 2 23 23 H 1.09007 * 109.47007 * 59.99697 * 1 2 3 24 24 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47445 * 300.00433 * 1 2 3 26 26 H 1.08999 * 109.47109 * 239.99985 * 2 1 3 27 27 H 1.08997 * 109.46904 * 119.99717 * 2 1 3 28 28 H 1.08995 * 109.46922 * 304.99634 * 3 2 1 29 29 H 1.09002 * 109.46875 * 304.99727 * 4 3 2 30 30 H 1.09001 * 109.47078 * 64.99735 * 4 3 2 31 31 H 1.08999 * 109.46466 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.46689 * 299.99741 * 5 4 3 33 33 H 1.09001 * 109.46854 * 59.99777 * 5 4 3 34 34 H 1.07997 * 120.00472 * 0.02562 * 7 6 3 35 35 H 1.08001 * 119.99666 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.00076 * 180.02562 * 9 8 7 37 37 H 1.00901 * 111.00295 * 176.05069 * 13 11 10 38 38 H 1.00901 * 111.00147 * 300.00293 * 13 11 10 39 39 H 0.96998 * 120.00057 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99812 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6353 2.1266 1.3074 5 6 2.0354 3.6025 1.2558 6 6 3.5420 1.4443 -0.1238 7 6 4.3153 0.8162 0.8348 8 6 5.6928 0.8173 0.7209 9 6 6.2973 1.4470 -0.3513 10 6 5.5239 2.0706 -1.3121 11 6 6.1825 2.7516 -2.4841 12 1 5.4576 2.8709 -3.2894 13 7 7.3084 1.9344 -2.9558 14 6 6.6884 4.1060 -2.0589 15 1 6.5467 4.4404 -1.0418 16 6 7.3320 4.9182 -2.9684 17 7 7.5049 4.5108 -4.2068 18 14 7.9597 6.5968 -2.4411 19 1 8.9470 6.4338 -1.3438 20 1 8.6096 7.2672 -3.5957 21 1 6.8218 7.4233 -1.9643 22 6 4.1462 2.0735 -1.1958 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5563 2.0471 1.4401 30 1 2.1408 1.6420 2.1426 31 1 1.7466 4.0898 2.1870 32 1 3.1143 3.6819 1.1231 33 1 1.5298 4.0870 0.4205 34 1 3.8431 0.3240 1.6721 35 1 6.2968 0.3263 1.4695 36 1 7.3736 1.4475 -0.4405 37 1 7.7267 2.3370 -3.7810 38 1 7.9947 1.8092 -2.2269 39 1 7.9574 5.0823 -4.8466 40 1 3.5420 2.5635 -1.9450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260444176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -11.571743 kcal Electronic energy + Delta-G solvation = -18033.826603 eV Core-core repulsion = 15425.759379 eV Total energy + Delta-G solvation = -2608.067224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22912 -36.53268 -34.34398 -31.66729 -31.48449 -30.27994 -29.14885 -25.92986 -25.91004 -23.09309 -22.59834 -21.47808 -20.76571 -18.49128 -16.48199 -16.21483 -15.15765 -14.87928 -14.58424 -14.28081 -14.12708 -13.68169 -13.51107 -12.94745 -12.85643 -12.29538 -12.09400 -11.90176 -11.80608 -11.53678 -11.33460 -11.29180 -11.08249 -10.90000 -10.81995 -10.61904 -10.43156 -10.28536 -10.05570 -9.91508 -9.46906 -8.65408 -8.05445 -7.78953 -7.16635 -6.07978 -4.25017 2.12683 2.22261 3.23880 3.28904 3.32284 4.30759 4.57293 4.87524 4.92154 5.13767 5.16555 5.34576 5.44856 5.51141 5.56023 5.66607 5.74359 5.83114 5.89616 5.94667 5.99654 6.06274 6.16789 6.19848 6.26291 6.30978 6.39969 6.49506 6.54746 6.70575 6.75146 6.84918 7.20164 7.26164 7.33144 7.73415 7.75187 7.88682 8.12732 8.68379 8.94455 9.12994 9.46723 10.89089 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.005768 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.844721 B = 4853.358953 C = 5184.690073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.046 4.046 4 C -0.113 4.113 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.143 4.143 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.020 4.020 11 C 0.239 3.761 12 H 0.045 0.955 13 N -0.850 5.850 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.066 3.934 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.121 4.121 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.355 0.645 38 H 0.311 0.689 39 H 0.266 0.734 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 -6.238 8.937 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.064 4.064 4 C -0.151 4.151 5 C -0.210 4.210 6 C -0.078 4.078 7 C -0.161 4.161 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.021 4.021 11 C 0.129 3.871 12 H 0.063 0.937 13 N -0.380 5.380 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.136 4.136 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.132 -6.755 8.621 14.920 hybrid contribution 1.034 1.946 0.431 2.246 sum -9.098 -4.809 9.053 13.706 Atomic orbital electron populations 1.21845 0.96212 1.01202 1.01784 1.21558 0.95186 0.96278 1.02200 1.20200 0.92003 0.95899 0.98340 1.21612 1.00309 0.96045 0.97091 1.21777 1.02602 0.95801 1.00855 1.19597 0.94213 0.98675 0.95325 1.20621 0.93581 1.02639 0.99274 1.20989 0.94578 1.00529 0.98250 1.20898 0.99783 0.98451 0.94164 1.20436 0.92820 0.92622 0.96206 1.18000 0.90814 0.88578 0.89701 0.93723 1.59536 1.13658 1.54070 1.10691 1.21792 1.37519 1.01784 0.97099 0.92686 1.25020 0.95625 0.98289 0.94685 1.69733 1.42685 1.37701 1.03203 0.86583 0.79111 0.83855 0.78042 1.20228 1.21177 1.20157 1.20895 0.94621 1.00512 0.97968 0.92806 0.93095 0.92621 0.91833 0.92051 0.90798 0.92115 0.92123 0.93420 0.91923 0.92918 0.87601 0.87419 0.86771 0.82928 0.87959 0.92425 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 37.16 0.36 -1.14 16 2 C -0.11 -1.35 5.14 -26.73 -0.14 -1.49 16 3 C -0.05 -0.62 2.04 -91.76 -0.19 -0.80 16 4 C -0.11 -1.37 5.16 -26.73 -0.14 -1.50 16 5 C -0.15 -2.02 9.73 37.16 0.36 -1.65 16 6 C -0.08 -1.30 3.76 -104.62 -0.39 -1.69 16 7 C -0.14 -2.30 8.71 -39.58 -0.34 -2.65 16 8 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 9 C -0.11 -2.30 9.29 -39.59 -0.37 -2.67 16 10 C -0.02 -0.45 4.89 -104.63 -0.51 -0.96 16 11 C 0.24 6.02 2.95 -70.02 -0.21 5.81 16 12 H 0.04 1.24 8.00 -51.93 -0.42 0.82 16 13 N -0.85 -20.54 9.02 -6.65 -0.06 -20.60 16 14 C -0.54 -14.66 8.70 -34.44 -0.30 -14.96 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 17 N -0.89 -24.71 11.54 55.43 0.64 -24.07 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 C -0.12 -2.40 9.29 -39.58 -0.37 -2.77 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.50 6.46 -51.93 -0.34 0.17 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.70 7.57 -51.93 -0.39 0.30 16 28 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 29 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 30 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.98 7.38 -51.93 -0.38 0.59 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.45 7.13 -52.49 -0.37 1.08 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 2.26 6.67 -52.49 -0.35 1.91 16 37 H 0.35 9.14 7.08 -39.29 -0.28 8.86 16 38 H 0.31 7.13 7.35 -39.29 -0.29 6.84 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.11 2.19 7.92 -52.49 -0.42 1.77 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -27.31 318.01 -8.80 -36.11 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.43 Total: 15.07 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.73 Total: -27.33 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.58 Total: -44.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.31 -8.80 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.540 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds