Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47284 * 65.00132 * 3 2 1 5 5 C 1.53002 * 109.46953 * 184.99846 * 4 3 2 6 6 C 1.50708 * 109.46666 * 184.99932 * 3 2 1 7 7 C 1.38254 * 119.99823 * 300.01969 * 6 3 2 8 8 C 1.38216 * 119.99725 * 179.97438 * 7 6 3 9 9 C 1.38256 * 120.00092 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99920 * 359.73680 * 9 8 7 11 11 C 1.50698 * 120.00309 * 180.28024 * 10 9 8 12 12 H 1.09001 * 109.47528 * 160.24188 * 11 10 9 13 13 N 1.46896 * 109.47037 * 40.23483 * 11 10 9 14 14 C 1.50701 * 109.46935 * 280.23873 * 11 10 9 15 15 H 1.07993 * 120.00367 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99653 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00338 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99710 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47328 * 59.99475 * 18 16 14 20 20 H 1.48496 * 109.46741 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46613 * 299.99606 * 18 16 14 22 22 C 1.38212 * 119.99857 * 120.00373 * 6 3 2 23 23 H 1.09007 * 109.47007 * 59.99697 * 1 2 3 24 24 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47445 * 300.00433 * 1 2 3 26 26 H 1.08999 * 109.47109 * 239.99985 * 2 1 3 27 27 H 1.08997 * 109.46904 * 119.99717 * 2 1 3 28 28 H 1.08995 * 109.46922 * 304.99634 * 3 2 1 29 29 H 1.09002 * 109.46875 * 304.99727 * 4 3 2 30 30 H 1.09001 * 109.47078 * 64.99735 * 4 3 2 31 31 H 1.08999 * 109.46466 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.46689 * 299.99741 * 5 4 3 33 33 H 1.09001 * 109.46854 * 59.99777 * 5 4 3 34 34 H 1.07997 * 120.00472 * 0.02562 * 7 6 3 35 35 H 1.08001 * 119.99666 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.00076 * 180.02562 * 9 8 7 37 37 H 1.00901 * 111.00295 * 176.05069 * 13 11 10 38 38 H 1.00901 * 111.00147 * 300.00293 * 13 11 10 39 39 H 0.96998 * 120.00057 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99812 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6353 2.1266 1.3074 5 6 2.0354 3.6025 1.2558 6 6 3.5420 1.4443 -0.1238 7 6 4.3153 0.8162 0.8348 8 6 5.6928 0.8173 0.7209 9 6 6.2973 1.4470 -0.3513 10 6 5.5239 2.0706 -1.3121 11 6 6.1825 2.7516 -2.4841 12 1 5.4576 2.8709 -3.2894 13 7 7.3084 1.9344 -2.9558 14 6 6.6884 4.1060 -2.0589 15 1 6.5467 4.4404 -1.0418 16 6 7.3320 4.9182 -2.9684 17 7 7.5049 4.5108 -4.2068 18 14 7.9597 6.5968 -2.4411 19 1 8.9470 6.4338 -1.3438 20 1 8.6096 7.2672 -3.5957 21 1 6.8218 7.4233 -1.9643 22 6 4.1462 2.0735 -1.1958 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5563 2.0471 1.4401 30 1 2.1408 1.6420 2.1426 31 1 1.7466 4.0898 2.1870 32 1 3.1143 3.6819 1.1231 33 1 1.5298 4.0870 0.4205 34 1 3.8431 0.3240 1.6721 35 1 6.2968 0.3263 1.4695 36 1 7.3736 1.4475 -0.4405 37 1 7.7267 2.3370 -3.7810 38 1 7.9947 1.8092 -2.2269 39 1 7.9574 5.0823 -4.8466 40 1 3.5420 2.5635 -1.9450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -25.957082 kcal Electronic energy + Delta-G solvation = -18034.450398 eV Core-core repulsion = 15425.759379 eV Total energy + Delta-G solvation = -2608.691020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61137 -37.86920 -36.09712 -33.47404 -32.55427 -31.66947 -30.73714 -27.94803 -27.02524 -24.79837 -23.57483 -22.87934 -22.15160 -19.86924 -18.56401 -17.70490 -16.72609 -16.48315 -16.01344 -15.51737 -15.28416 -15.05660 -14.81535 -14.67517 -14.17734 -13.91936 -13.47096 -13.22157 -13.06646 -12.89815 -12.83487 -12.76276 -12.55277 -12.45340 -12.29921 -11.99377 -11.84008 -11.58588 -11.38427 -11.26569 -11.03363 -10.73528 -9.55441 -9.32456 -9.13333 -8.13728 -6.40669 0.68051 0.74150 1.35908 1.36177 1.45098 2.34129 3.01320 3.10620 3.79186 3.87823 4.20550 4.24108 4.27993 4.38842 4.41657 4.46372 4.62687 4.64826 4.67075 4.80510 4.85136 4.90680 4.97043 5.09627 5.11863 5.15729 5.28888 5.31115 5.33639 5.41333 5.49643 5.50338 5.56475 5.59755 5.78282 5.88686 5.97748 6.18447 6.36037 6.61329 6.89648 7.08651 7.35685 8.79990 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.005768 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.844721 B = 4853.358953 C = 5184.690073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.046 4.046 4 C -0.107 4.107 5 C -0.154 4.154 6 C -0.067 4.067 7 C -0.135 4.135 8 C -0.118 4.118 9 C -0.133 4.133 10 C -0.051 4.051 11 C 0.243 3.757 12 H 0.005 0.995 13 N -0.842 5.842 14 C -0.558 4.558 15 H 0.044 0.956 16 C 0.022 3.978 17 N -0.916 5.916 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.275 1.275 22 C -0.143 4.143 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.344 0.656 38 H 0.318 0.682 39 H 0.268 0.732 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 -6.935 11.495 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.065 4.065 4 C -0.144 4.144 5 C -0.211 4.211 6 C -0.067 4.067 7 C -0.153 4.153 8 C -0.136 4.136 9 C -0.152 4.152 10 C -0.051 4.051 11 C 0.133 3.867 12 H 0.022 0.978 13 N -0.370 5.370 14 C -0.597 4.597 15 H 0.062 0.938 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.162 4.162 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.282 -7.464 11.187 17.554 hybrid contribution 1.333 2.121 -0.353 2.530 sum -9.948 -5.343 10.835 15.650 Atomic orbital electron populations 1.21821 0.94456 1.02196 1.02238 1.21526 0.96700 0.94528 1.02090 1.20269 0.89571 0.97502 0.99118 1.21601 1.01948 0.94710 0.96146 1.21781 1.00473 0.97223 1.01648 1.19920 0.96259 0.96689 0.93815 1.21044 0.93211 1.01390 0.99613 1.21337 0.95534 0.99206 0.97544 1.20932 0.99504 0.99613 0.95146 1.20244 0.93910 0.94763 0.96219 1.17791 0.90203 0.88848 0.89849 0.97751 1.59496 1.13583 1.53532 1.10432 1.21975 1.38039 1.03031 0.96689 0.93767 1.25762 0.95706 1.01673 0.94691 1.69837 1.42965 1.38834 1.03942 0.85598 0.78503 0.79574 0.77879 1.19628 1.20401 1.20071 1.20925 0.93900 1.01983 0.99379 0.93197 0.91882 0.91344 0.93284 0.90823 0.91791 0.89652 0.91102 0.91623 0.94959 0.93384 0.83891 0.84064 0.87344 0.84160 0.87176 0.92255 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.67 71.98 0.70 -1.76 16 2 C -0.11 -2.30 5.14 30.60 0.16 -2.14 16 3 C -0.05 -1.15 2.04 -11.54 -0.02 -1.18 16 4 C -0.11 -2.24 5.16 30.60 0.16 -2.08 16 5 C -0.15 -3.81 9.73 71.98 0.70 -3.11 16 6 C -0.07 -2.15 3.76 -19.86 -0.07 -2.23 16 7 C -0.13 -3.96 8.71 22.27 0.19 -3.76 16 8 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 9 C -0.13 -5.39 9.29 22.27 0.21 -5.18 16 10 C -0.05 -2.33 4.89 -19.87 -0.10 -2.42 16 11 C 0.24 12.93 2.95 43.42 0.13 13.06 16 12 H 0.00 0.27 8.00 -2.39 -0.02 0.25 16 13 N -0.84 -42.50 9.02 -174.96 -1.58 -44.08 16 14 C -0.56 -31.34 8.70 25.60 0.22 -31.12 16 15 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 16 C 0.02 1.21 5.38 84.66 0.46 1.66 16 17 N -0.92 -52.04 11.54 21.45 0.25 -51.79 16 18 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.14 -5.89 9.29 22.27 0.21 -5.68 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.95 6.46 -2.39 -0.02 0.94 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.36 7.57 -2.39 -0.02 1.34 16 28 H 0.06 1.73 7.88 -2.39 -0.02 1.71 16 29 H 0.09 1.42 6.34 -2.39 -0.02 1.41 16 30 H 0.07 1.37 7.23 -2.39 -0.02 1.36 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 0.98 7.38 -2.39 -0.02 0.96 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.14 3.19 7.13 -2.91 -0.02 3.17 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.11 4.38 6.67 -2.91 -0.02 4.36 16 37 H 0.34 18.50 7.08 -89.69 -0.63 17.87 16 38 H 0.32 15.12 7.35 -89.69 -0.66 14.46 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.10 4.14 7.92 -2.91 -0.02 4.12 16 Total: -1.00 -60.83 318.01 3.58 -57.25 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.27 Total: 42.36 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 3.15 Total: -49.53 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -1.33 Total: -95.87 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -60.83 3.58 -57.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.293 kcal (2) G-P(sol) polarization free energy of solvation -60.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds