Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46600 * 2 1 4 4 C 1.50693 * 109.47631 * 119.99955 * 2 1 3 5 5 C 1.38304 * 119.92534 * 300.00831 * 4 2 1 6 6 C 1.38086 * 120.07614 * 180.02562 * 5 4 2 7 7 C 1.38938 * 119.92272 * 359.97438 * 6 5 4 8 8 N 1.39677 * 120.07613 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99742 * 300.02362 * 8 7 6 10 10 C 1.46904 * 110.99379 * 63.97396 * 8 7 6 11 11 C 1.38895 * 119.85248 * 0.02562 * 7 6 5 12 12 C 1.50698 * 120.03757 * 179.97438 * 11 7 6 13 13 C 1.50697 * 109.46993 * 84.99931 * 12 11 7 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.38126 * 119.92104 * 0.25182 * 11 7 6 22 22 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46964 * 299.99426 * 1 2 3 24 24 H 1.08999 * 109.47532 * 60.00159 * 1 2 3 25 25 H 1.09004 * 109.47222 * 240.01104 * 2 1 3 26 26 H 1.09002 * 109.46632 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47446 * 299.99773 * 3 2 1 28 28 H 1.08994 * 109.46993 * 60.00592 * 3 2 1 29 29 H 1.07995 * 119.96704 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.04120 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47374 * 60.00214 * 9 8 7 32 32 H 1.09003 * 109.46535 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47317 * 299.99604 * 9 8 7 34 34 H 1.08993 * 109.47378 * 60.00533 * 10 8 7 35 35 H 1.09006 * 109.46262 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47128 * 299.99827 * 10 8 7 37 37 H 1.08998 * 109.47083 * 324.99347 * 12 11 7 38 38 H 1.09001 * 109.46875 * 204.99610 * 12 11 7 39 39 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 40 40 H 1.08005 * 119.96185 * 179.72685 * 21 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.6973 -0.2366 2.4858 6 6 2.1564 -0.8848 3.6153 7 6 2.9555 -2.0144 3.4896 8 7 3.4221 -2.6722 4.6299 9 6 4.2440 -1.7768 5.4549 10 6 2.3083 -3.2306 5.4082 11 6 3.2902 -2.4875 2.2273 12 6 4.1571 -3.7121 2.0860 13 6 3.2975 -4.9475 2.1625 14 1 2.2309 -4.8554 2.3042 15 6 3.8737 -6.1958 2.0568 16 7 5.1726 -6.3079 1.8838 17 14 2.8093 -7.7274 2.1593 18 1 1.8016 -7.7038 1.0687 19 1 3.6635 -8.9340 2.0188 20 1 2.1168 -7.7619 3.4725 21 6 2.8322 -1.8309 1.1017 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.0765 0.6417 2.5829 30 1 1.8948 -0.5141 4.5953 31 1 3.6473 -0.9193 5.7657 32 1 4.5939 -2.3141 6.3364 33 1 5.1004 -1.4325 4.8751 34 1 1.7575 -3.9433 4.7945 35 1 2.6997 -3.7368 6.2907 36 1 1.6415 -2.4257 5.7173 37 1 4.8929 -3.7310 2.8899 38 1 4.6699 -3.6852 1.1246 39 1 5.5778 -7.1861 1.8091 40 1 3.0957 -2.1957 0.1198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = 13.258439 kcal Electronic energy + Delta-G solvation = -18262.460011 eV Core-core repulsion = 15655.469504 eV Total energy + Delta-G solvation = -2606.990507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54468 -36.92201 -34.35650 -33.00758 -31.02010 -28.81204 -27.09387 -27.02087 -26.85149 -24.08342 -23.13755 -21.56325 -20.79124 -18.61524 -16.37704 -16.11854 -15.56744 -14.79779 -14.41424 -14.40267 -13.90625 -13.64730 -13.28487 -13.19370 -12.49021 -12.37461 -12.25804 -12.09745 -11.96766 -11.50794 -11.38244 -11.21677 -11.19505 -11.06265 -10.80526 -10.72835 -10.55954 -10.39239 -10.07848 -9.46486 -9.31589 -8.26784 -8.05484 -7.74997 -7.60799 -5.89431 -3.89605 1.92454 2.15718 3.38483 3.42474 3.45347 4.35086 4.50777 4.58237 4.98288 5.04380 5.37543 5.44192 5.47053 5.54252 5.66015 5.69257 5.70217 5.73269 5.86610 5.91132 5.95321 5.97924 6.06063 6.13114 6.21811 6.26965 6.37330 6.40728 6.49257 6.50307 6.82068 6.95658 7.15191 7.29178 7.51538 7.52061 7.77496 7.99004 8.08321 8.19950 8.50806 9.12786 9.70733 11.21258 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.007385 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.468626 B = 3790.541843 C = 4598.301685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.151 4.151 7 C 0.076 3.924 8 N -0.488 5.488 9 C 0.032 3.968 10 C 0.039 3.961 11 C -0.009 4.009 12 C 0.058 3.942 13 C -0.490 4.490 14 H 0.050 0.950 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.120 4.120 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.043 0.957 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 12.812 1.504 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.083 4.083 5 C -0.154 4.154 6 C -0.171 4.171 7 C -0.017 4.017 8 N -0.208 5.208 9 C -0.115 4.115 10 C -0.108 4.108 11 C -0.010 4.010 12 C 0.021 3.979 13 C -0.528 4.528 14 H 0.068 0.932 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.138 4.138 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.825 12.269 1.362 13.650 hybrid contribution -1.100 -0.287 0.453 1.224 sum -6.925 11.982 1.814 13.957 Atomic orbital electron populations 1.21830 0.94871 1.01975 1.01176 1.20074 0.95543 0.95659 0.96069 1.21834 1.01239 0.95502 1.01226 1.19735 0.98403 0.96201 0.93981 1.20474 1.02528 1.00503 0.91892 1.21446 1.00155 0.97558 0.97944 1.18624 0.98107 0.93369 0.91613 1.59346 1.21577 1.34379 1.05460 1.22395 0.97430 0.94414 0.97263 1.22336 0.92198 0.98629 0.97667 1.20647 0.94607 0.95533 0.90188 1.18212 0.93974 0.87933 0.97743 1.20858 0.93374 0.89907 1.48709 0.93178 1.24927 0.94843 0.98721 0.95726 1.69946 1.09597 1.23592 1.50509 0.86704 0.80316 0.82712 0.78510 1.20457 1.21397 1.20357 1.20982 0.98895 0.95237 0.98735 0.92467 0.92783 0.92948 0.90650 0.92597 0.92934 0.92775 0.87486 0.87615 0.96309 0.91587 0.91562 0.90688 0.91745 0.96585 0.93901 0.96284 0.93095 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.01 37.16 0.33 -1.35 16 2 C -0.06 -0.73 3.09 -91.77 -0.28 -1.02 16 3 C -0.14 -1.61 9.01 37.16 0.33 -1.28 16 4 C -0.08 -1.38 4.78 -104.59 -0.50 -1.88 16 5 C -0.14 -2.17 8.70 -39.61 -0.34 -2.52 16 6 C -0.15 -2.62 8.57 -39.38 -0.34 -2.95 16 7 C 0.08 1.54 4.71 -83.78 -0.39 1.15 16 8 N -0.49 -9.58 4.03 -186.85 -0.75 -10.33 16 9 C 0.03 0.52 9.34 60.06 0.56 1.08 16 10 C 0.04 0.68 9.38 60.07 0.56 1.24 16 11 C -0.01 -0.20 5.09 -104.42 -0.53 -0.73 16 12 C 0.06 1.53 4.80 -29.04 -0.14 1.40 16 13 C -0.49 -13.88 9.09 -34.44 -0.31 -14.19 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.12 -2.37 9.30 -39.61 -0.37 -2.74 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.62 7.38 -51.93 -0.38 0.23 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.00 7.87 -51.93 -0.41 0.60 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.60 7.38 -51.93 -0.38 0.21 16 29 H 0.11 1.46 7.09 -52.49 -0.37 1.09 16 30 H 0.11 1.64 7.02 -52.49 -0.37 1.27 16 31 H 0.02 0.27 7.12 -51.93 -0.37 -0.10 16 32 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 36 H 0.02 0.24 7.34 -51.93 -0.38 -0.14 16 37 H 0.04 1.22 7.63 -51.93 -0.40 0.82 16 38 H 0.02 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.12 2.29 7.94 -52.48 -0.42 1.87 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -30.26 324.47 -8.48 -38.74 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.82 Total: -1.77 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.52 Total: -22.22 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.02 Total: -36.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.26 -8.48 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.996 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds