Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46600 * 2 1 4 4 C 1.50693 * 109.47631 * 119.99955 * 2 1 3 5 5 C 1.38304 * 119.92534 * 300.00831 * 4 2 1 6 6 C 1.38086 * 120.07614 * 180.02562 * 5 4 2 7 7 C 1.38938 * 119.92272 * 359.97438 * 6 5 4 8 8 N 1.39677 * 120.07613 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99742 * 300.02362 * 8 7 6 10 10 C 1.46904 * 110.99379 * 63.97396 * 8 7 6 11 11 C 1.38895 * 119.85248 * 0.02562 * 7 6 5 12 12 C 1.50698 * 120.03757 * 179.97438 * 11 7 6 13 13 C 1.50697 * 109.46993 * 84.99931 * 12 11 7 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.38126 * 119.92104 * 0.25182 * 11 7 6 22 22 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46964 * 299.99426 * 1 2 3 24 24 H 1.08999 * 109.47532 * 60.00159 * 1 2 3 25 25 H 1.09004 * 109.47222 * 240.01104 * 2 1 3 26 26 H 1.09002 * 109.46632 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47446 * 299.99773 * 3 2 1 28 28 H 1.08994 * 109.46993 * 60.00592 * 3 2 1 29 29 H 1.07995 * 119.96704 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.04120 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47374 * 60.00214 * 9 8 7 32 32 H 1.09003 * 109.46535 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47317 * 299.99604 * 9 8 7 34 34 H 1.08993 * 109.47378 * 60.00533 * 10 8 7 35 35 H 1.09006 * 109.46262 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47128 * 299.99827 * 10 8 7 37 37 H 1.08998 * 109.47083 * 324.99347 * 12 11 7 38 38 H 1.09001 * 109.46875 * 204.99610 * 12 11 7 39 39 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 40 40 H 1.08005 * 119.96185 * 179.72685 * 21 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.6973 -0.2366 2.4858 6 6 2.1564 -0.8848 3.6153 7 6 2.9555 -2.0144 3.4896 8 7 3.4221 -2.6722 4.6299 9 6 4.2440 -1.7768 5.4549 10 6 2.3083 -3.2306 5.4082 11 6 3.2902 -2.4875 2.2273 12 6 4.1571 -3.7121 2.0860 13 6 3.2975 -4.9475 2.1625 14 1 2.2309 -4.8554 2.3042 15 6 3.8737 -6.1958 2.0568 16 7 5.1726 -6.3079 1.8838 17 14 2.8093 -7.7274 2.1593 18 1 1.8016 -7.7038 1.0687 19 1 3.6635 -8.9340 2.0188 20 1 2.1168 -7.7619 3.4725 21 6 2.8322 -1.8309 1.1017 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.0765 0.6417 2.5829 30 1 1.8948 -0.5141 4.5953 31 1 3.6473 -0.9193 5.7657 32 1 4.5939 -2.3141 6.3364 33 1 5.1004 -1.4325 4.8751 34 1 1.7575 -3.9433 4.7945 35 1 2.6997 -3.7368 6.2907 36 1 1.6415 -2.4257 5.7173 37 1 4.8929 -3.7310 2.8899 38 1 4.6699 -3.6852 1.1246 39 1 5.5778 -7.1861 1.8091 40 1 3.0957 -2.1957 0.1198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = -2.795610 kcal Electronic energy + Delta-G solvation = -18263.156167 eV Core-core repulsion = 15655.469504 eV Total energy + Delta-G solvation = -2607.686663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97552 -38.20744 -35.87944 -34.83810 -32.77640 -30.23523 -28.72118 -28.40054 -27.91502 -25.59197 -24.92591 -22.91174 -22.26918 -19.99802 -18.40581 -17.71518 -16.94030 -16.53626 -15.97053 -15.81728 -15.16677 -14.91446 -14.56815 -14.44411 -14.22577 -13.92622 -13.64562 -13.31579 -13.19451 -13.06086 -12.96205 -12.67384 -12.61493 -12.52559 -12.50179 -12.29522 -11.93894 -11.77496 -11.46977 -11.44578 -11.22287 -10.50952 -9.54006 -9.14364 -9.11515 -8.10899 -6.20170 0.50245 0.67570 1.38803 1.41727 1.49396 2.43593 2.94221 3.14434 3.20275 3.85607 3.96008 4.15537 4.26718 4.39299 4.39570 4.43102 4.52932 4.62339 4.63786 4.66194 4.83463 4.87344 4.96394 4.98772 5.03410 5.04064 5.05513 5.15543 5.27133 5.35008 5.39623 5.46165 5.53524 5.61443 5.82580 5.86707 5.98895 6.18016 6.22161 6.30095 6.73970 6.89766 7.44756 8.99079 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.007385 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.468626 B = 3790.541843 C = 4598.301685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 C -0.136 4.136 4 C -0.076 4.076 5 C -0.122 4.122 6 C -0.146 4.146 7 C 0.068 3.932 8 N -0.525 5.525 9 C 0.036 3.964 10 C 0.043 3.957 11 C -0.049 4.049 12 C 0.075 3.925 13 C -0.499 4.499 14 H 0.044 0.956 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.957 3.043 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.136 4.136 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.011 0.989 38 H -0.014 1.014 39 H 0.262 0.738 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 14.735 2.248 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.076 4.076 5 C -0.140 4.140 6 C -0.166 4.166 7 C -0.026 4.026 8 N -0.246 5.246 9 C -0.111 4.111 10 C -0.103 4.103 11 C -0.050 4.050 12 C 0.038 3.962 13 C -0.538 4.538 14 H 0.062 0.938 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.155 4.155 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.151 0.849 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.240 14.205 2.109 16.556 hybrid contribution -0.340 -0.804 0.204 0.896 sum -8.580 13.401 2.313 16.080 Atomic orbital electron populations 1.21811 0.93263 1.01521 1.02890 1.20160 0.96766 0.96552 0.94056 1.21806 1.00636 0.94020 1.02877 1.20055 0.96715 0.94774 0.96081 1.20904 1.01371 1.00818 0.90917 1.21675 0.98917 0.96230 0.99765 1.18696 0.98681 0.94362 0.90849 1.59239 1.22889 1.36109 1.06361 1.22393 0.96846 0.94890 0.96935 1.22279 0.91993 0.98862 0.97185 1.20405 0.96621 0.95408 0.92572 1.17822 0.93716 0.90138 0.94535 1.21104 0.93231 0.91120 1.48297 0.93763 1.25803 0.96123 1.02095 0.95250 1.70086 1.11413 1.24430 1.51506 0.85628 0.78645 0.78580 0.78946 1.19574 1.20705 1.19405 1.20987 1.00253 0.96758 0.97513 0.94014 0.91667 0.90684 0.91324 0.93598 0.90755 0.91680 0.83709 0.84859 0.93885 0.90230 0.92840 0.93671 0.90369 0.94006 0.97095 0.99533 0.92962 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.01 71.98 0.65 -2.19 16 2 C -0.06 -1.39 3.09 -11.54 -0.04 -1.43 16 3 C -0.14 -2.67 9.01 71.98 0.65 -2.02 16 4 C -0.08 -2.43 4.78 -19.84 -0.09 -2.53 16 5 C -0.12 -3.52 8.70 22.25 0.19 -3.32 16 6 C -0.15 -4.68 8.57 22.40 0.19 -4.49 16 7 C 0.07 2.74 4.71 38.22 0.18 2.92 16 8 N -0.53 -20.68 4.03 -745.07 -3.00 -23.68 16 9 C 0.04 1.12 9.34 127.69 1.19 2.31 16 10 C 0.04 1.48 9.38 127.69 1.20 2.68 16 11 C -0.05 -2.29 5.09 -19.73 -0.10 -2.39 16 12 C 0.07 4.23 4.80 29.10 0.14 4.37 16 13 C -0.50 -29.59 9.09 25.60 0.23 -29.35 16 14 H 0.04 2.61 7.74 -2.92 -0.02 2.59 16 15 C 0.00 0.26 5.46 84.66 0.46 0.72 16 16 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 17 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.14 -5.58 9.30 22.25 0.21 -5.37 16 22 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.20 7.38 -2.39 -0.02 1.18 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.76 7.87 -2.39 -0.02 1.75 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.14 7.38 -2.39 -0.02 1.12 16 29 H 0.15 3.15 7.09 -2.91 -0.02 3.13 16 30 H 0.13 3.54 7.02 -2.91 -0.02 3.52 16 31 H 0.04 1.11 7.12 -2.39 -0.02 1.09 16 32 H 0.08 2.19 8.12 -2.39 -0.02 2.18 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.38 8.12 -2.38 -0.02 2.36 16 36 H 0.04 1.18 7.34 -2.39 -0.02 1.17 16 37 H 0.01 0.66 7.63 -2.39 -0.02 0.64 16 38 H -0.01 -0.83 8.05 -2.39 -0.02 -0.85 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.11 4.43 7.94 -2.91 -0.02 4.40 16 Total: -1.00 -68.61 324.47 5.35 -63.25 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.98 Total: 10.66 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 5.06 Total: -40.10 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.72 Total: -81.80 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.61 5.35 -63.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.457 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds