Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 C 1.52998 * 109.46889 * 175.28296 * 3 2 1 5 5 C 1.53004 * 109.46963 * 294.42116 * 4 3 2 6 6 C 1.50707 * 109.47081 * 295.28128 * 3 2 1 7 7 C 1.38238 * 119.99910 * 120.00053 * 6 3 2 8 8 C 1.38231 * 119.99543 * 179.97438 * 7 6 3 9 9 C 1.38227 * 120.00386 * 359.96026 * 8 7 6 10 10 C 1.50698 * 120.00240 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47053 * 19.99277 * 10 9 8 12 12 N 1.46897 * 109.47545 * 139.99307 * 10 9 8 13 13 C 1.50699 * 109.47016 * 259.99627 * 10 9 8 14 14 H 1.07993 * 120.00167 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99949 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99840 * 180.27780 * 15 13 10 17 17 Si 1.86803 * 119.99962 * 0.02562 * 15 13 10 18 18 H 1.48499 * 109.46918 * 89.99794 * 17 15 13 19 19 H 1.48494 * 109.46977 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.47209 * 329.99783 * 17 15 13 21 21 C 1.38233 * 120.00228 * 0.27119 * 9 8 7 22 22 C 1.38232 * 119.99945 * 299.98005 * 6 3 2 23 23 H 1.08997 * 109.47594 * 306.86841 * 1 2 3 24 24 H 1.09007 * 109.47190 * 66.86791 * 1 2 3 25 25 H 1.09002 * 109.47477 * 186.86318 * 1 2 3 26 26 H 1.08998 * 109.46750 * 239.99683 * 2 1 3 27 27 H 1.08994 * 109.46689 * 120.00081 * 2 1 3 28 28 H 1.09003 * 109.46914 * 55.27898 * 3 2 1 29 29 H 1.08991 * 109.47588 * 54.43026 * 4 3 2 30 30 H 1.09001 * 109.47114 * 174.42979 * 4 3 2 31 31 H 1.08997 * 109.47214 * 306.19868 * 5 4 3 32 32 H 1.09001 * 109.46328 * 66.20437 * 5 4 3 33 33 H 1.08998 * 109.46982 * 186.19451 * 5 4 3 34 34 H 1.07995 * 119.99828 * 359.97438 * 7 6 3 35 35 H 1.08002 * 119.99172 * 179.97438 * 8 7 6 36 36 H 1.00901 * 111.00439 * 296.05111 * 12 10 9 37 37 H 1.00902 * 110.99847 * 60.00184 * 12 10 9 38 38 H 0.96996 * 119.99299 * 179.72939 * 16 15 13 39 39 H 1.07998 * 120.00474 * 179.73409 * 21 9 8 40 40 H 1.08007 * 119.99819 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4440 0.1186 5 6 3.9713 0.8844 1.4835 6 6 1.6354 2.1184 -1.2848 7 6 0.8344 3.2445 -1.2508 8 6 0.4637 3.8647 -2.4293 9 6 0.8946 3.3593 -3.6416 10 6 0.4910 4.0358 -4.9263 11 1 0.1828 5.0601 -4.7163 12 7 1.6309 4.0476 -5.8527 13 6 -0.6562 3.2842 -5.5508 14 1 -1.0536 2.4050 -5.0658 15 6 -1.1993 3.7198 -6.7410 16 7 -2.2040 3.0670 -7.2833 17 14 -0.5125 5.2411 -7.5797 18 1 0.5768 4.8453 -8.5081 19 1 -1.5928 5.9158 -8.3430 20 1 0.0247 6.1716 -6.5545 21 6 1.6916 2.2304 -3.6758 22 6 2.0655 1.6124 -2.4971 23 1 -0.3634 0.6165 0.8221 24 1 -0.3634 0.4037 -0.9451 25 1 -0.3634 -1.0203 0.1228 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6092 1.9801 0.8447 29 1 3.9918 0.8240 -0.6698 30 1 3.9365 2.4641 0.0193 31 1 3.4571 1.4365 2.2702 32 1 3.6973 -0.1691 1.5402 33 1 5.0488 0.9869 1.6124 34 1 0.4983 3.6397 -0.3036 35 1 -0.1624 4.7443 -2.4027 36 1 2.3906 4.6001 -5.4844 37 1 1.9354 3.1090 -6.0632 38 1 -2.5886 3.3757 -8.1185 39 1 2.0248 1.8331 -4.6231 40 1 2.6919 0.7330 -2.5236 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260490468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = -23.453892 kcal Electronic energy + Delta-G solvation = -17939.508386 eV Core-core repulsion = 15330.925913 eV Total energy + Delta-G solvation = -2608.582473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71493 -38.07130 -35.90803 -33.92961 -32.56241 -31.75091 -30.97146 -28.47700 -26.93619 -24.10487 -23.72315 -23.44905 -21.57418 -20.45957 -18.98274 -17.53734 -16.86443 -16.22689 -16.04569 -15.76969 -15.32081 -15.23361 -14.95481 -14.65687 -14.32321 -14.12688 -13.69339 -13.49616 -13.32804 -13.09803 -12.80537 -12.69751 -12.47460 -12.23925 -11.97741 -11.88142 -11.76092 -11.54817 -11.39831 -11.28780 -11.13968 -10.76676 -9.72257 -9.46394 -9.14594 -8.25949 -6.39076 0.59707 0.60603 1.49449 1.56337 1.70247 2.51560 2.95802 3.09578 3.77632 3.82915 4.14301 4.18672 4.19716 4.23486 4.25060 4.39136 4.45743 4.58450 4.63096 4.70360 4.77143 4.87324 4.92589 4.99624 5.08948 5.11913 5.17495 5.28678 5.30006 5.31440 5.39693 5.46101 5.52333 5.53258 5.66205 5.82918 5.91373 6.11744 6.24865 6.46893 6.74611 6.97495 7.37632 8.87434 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.037875 B = 0.005192 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.102970 B = 5391.116866 C = 5701.258243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.040 4.040 4 C -0.113 4.113 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.120 4.120 8 C -0.133 4.133 9 C -0.100 4.100 10 C 0.223 3.777 11 H 0.039 0.961 12 N -0.842 5.842 13 C -0.513 4.513 14 H 0.025 0.975 15 C 0.026 3.974 16 N -0.949 5.949 17 Si 1.003 2.997 18 H -0.276 1.276 19 H -0.323 1.323 20 H -0.262 1.262 21 C -0.127 4.127 22 C -0.116 4.116 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.332 0.668 37 H 0.339 0.661 38 H 0.265 0.735 39 H 0.112 0.888 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -3.147 17.380 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.058 4.058 4 C -0.151 4.151 5 C -0.206 4.206 6 C -0.084 4.084 7 C -0.138 4.138 8 C -0.152 4.152 9 C -0.102 4.102 10 C 0.113 3.887 11 H 0.057 0.943 12 N -0.373 5.373 13 C -0.551 4.551 14 H 0.044 0.956 15 C -0.173 4.173 16 N -0.589 5.589 17 Si 0.833 3.167 18 H -0.201 1.201 19 H -0.253 1.253 20 H -0.186 1.186 21 C -0.146 4.146 22 C -0.134 4.134 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.162 -2.813 16.733 20.877 hybrid contribution 0.030 0.057 -0.298 0.305 sum 12.192 -2.756 16.435 20.649 Atomic orbital electron populations 1.21768 0.96590 1.01637 1.00962 1.21619 0.95322 0.95384 1.02608 1.20258 0.96304 0.95844 0.93439 1.21539 0.93691 1.01210 0.98620 1.21805 1.01377 1.01421 0.96044 1.19972 0.97576 0.95497 0.95360 1.21203 0.98675 0.96191 0.97762 1.21162 1.00469 1.01033 0.92551 1.20947 0.96201 0.96525 0.96513 1.18351 0.89271 0.95028 0.86041 0.94298 1.59074 1.10887 1.18972 1.48402 1.20978 1.15067 1.12230 1.06811 0.95648 1.25885 0.93823 1.00234 0.97341 1.70095 1.26144 1.42536 1.20098 0.84807 0.75436 0.78612 0.77878 1.20149 1.25326 1.18629 1.20981 0.99362 0.95662 0.98574 1.21048 1.00664 1.00020 0.91649 0.92185 0.95238 0.92230 0.92448 0.89660 0.89946 0.91986 0.92584 0.92338 0.91909 0.92245 0.84635 0.86729 0.85496 0.84624 0.92659 0.86998 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.61 71.98 0.69 -2.65 16 2 C -0.11 -2.14 5.17 30.59 0.16 -1.98 16 3 C -0.04 -0.81 2.03 -11.54 -0.02 -0.83 16 4 C -0.11 -1.96 5.13 30.59 0.16 -1.80 16 5 C -0.15 -1.97 9.53 71.98 0.69 -1.28 16 6 C -0.08 -2.30 3.87 -19.86 -0.08 -2.38 16 7 C -0.12 -3.62 9.67 22.27 0.22 -3.41 16 8 C -0.13 -4.90 9.67 22.27 0.22 -4.68 16 9 C -0.10 -4.07 4.88 -19.87 -0.10 -4.17 16 10 C 0.22 10.42 2.34 43.42 0.10 10.52 16 11 H 0.04 1.88 7.06 -2.39 -0.02 1.87 16 12 N -0.84 -34.69 6.59 -174.96 -1.15 -35.85 16 13 C -0.51 -29.77 9.28 25.60 0.24 -29.54 16 14 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 15 C 0.03 1.55 5.47 84.66 0.46 2.01 16 16 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 17 Si 1.00 50.03 26.03 68.60 1.79 51.82 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.32 -16.20 7.11 99.48 0.71 -15.50 16 20 H -0.26 -12.36 6.54 99.48 0.65 -11.70 16 21 C -0.13 -4.66 9.29 22.27 0.21 -4.45 16 22 C -0.12 -3.49 8.71 22.27 0.19 -3.30 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.03 0.82 7.60 -2.38 -0.02 0.80 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.17 7.24 -2.39 -0.02 1.15 16 27 H 0.08 1.27 6.51 -2.39 -0.02 1.25 16 28 H 0.08 1.53 7.88 -2.39 -0.02 1.51 16 29 H 0.06 1.09 7.59 -2.39 -0.02 1.07 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.75 6.79 -2.39 -0.02 0.73 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.14 3.32 7.95 -2.91 -0.02 3.30 16 35 H 0.11 4.10 8.04 -2.91 -0.02 4.08 16 36 H 0.33 11.52 9.06 -89.69 -0.81 10.71 16 37 H 0.34 13.50 7.35 -89.69 -0.66 12.84 16 38 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.11 4.06 6.67 -2.91 -0.02 4.04 16 40 H 0.13 3.34 7.14 -2.91 -0.02 3.32 16 Total: -1.00 -67.70 315.86 3.55 -64.14 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.51 Total: 28.29 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 3.13 Total: -47.94 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -0.85 Total: -96.32 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.79 Total: 51.82 kcal Total: -67.70 3.55 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds