Wall clock time and date at job start Mon Mar 30 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47126 * 120.00227 * 2 1 3 5 5 C 1.35075 * 125.86064 * 325.01757 * 4 2 1 6 6 C 1.40249 * 107.26384 * 179.77973 * 5 4 2 7 7 C 1.35266 * 107.61383 * 0.16822 * 6 5 4 8 8 N 1.35824 * 108.18750 * 0.09458 * 7 6 5 9 9 C 1.46505 * 125.67499 * 179.87396 * 8 7 6 10 10 C 1.50895 * 124.00671 * 180.12084 * 7 6 5 11 11 C 1.53356 * 108.40365 * 16.63095 * 10 7 6 12 12 H 1.08991 * 109.46529 * 70.01402 * 11 10 7 13 13 C 1.50700 * 109.45386 * 189.99296 * 11 10 7 14 14 H 1.07998 * 120.00164 * 0.03492 * 13 11 10 15 15 C 1.37881 * 119.99950 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99728 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00092 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47289 * 59.99417 * 17 15 13 19 19 H 1.48499 * 109.47263 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46976 * 299.99815 * 17 15 13 21 21 C 1.53122 * 109.51616 * 309.99564 * 11 10 7 22 22 C 1.50745 * 128.04041 * 180.08769 * 6 5 4 23 23 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46738 * 299.99681 * 1 2 3 25 25 H 1.08995 * 109.47551 * 59.99711 * 1 2 3 26 26 H 1.09003 * 109.46738 * 240.00319 * 2 1 3 27 27 H 1.08994 * 109.47173 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00373 * 3 2 1 29 29 H 1.08993 * 109.46853 * 59.99968 * 3 2 1 30 30 H 1.08002 * 126.37134 * 0.05381 * 5 4 2 31 31 H 1.08993 * 109.46856 * 89.99850 * 9 8 7 32 32 H 1.08999 * 109.46902 * 209.99648 * 9 8 7 33 33 H 1.09001 * 109.46648 * 329.99669 * 9 8 7 34 34 H 1.08996 * 109.68054 * 256.90070 * 10 7 6 35 35 H 1.08993 * 109.67782 * 136.35500 * 10 7 6 36 36 H 0.96998 * 119.99996 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.47733 * 310.13955 * 21 11 10 38 38 H 1.08997 * 109.46977 * 190.12583 * 21 11 10 39 39 H 1.09006 * 109.68213 * 316.25463 * 22 6 5 40 40 H 1.09002 * 109.68057 * 76.80599 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4505 -0.6895 2.4492 6 6 2.2363 -1.4813 3.2993 7 6 3.2737 -1.9565 2.5729 8 7 3.1557 -1.4833 1.3053 9 6 4.0776 -1.7599 0.2008 10 6 4.3503 -2.8565 3.1278 11 6 3.8511 -3.4496 4.4510 12 1 3.0517 -4.1629 4.2506 13 6 4.9883 -4.1522 5.1468 14 1 5.9681 -4.1739 4.6931 15 6 4.7779 -4.7673 6.3627 16 7 3.5849 -4.7402 6.9155 17 14 6.1873 -5.6388 7.2249 18 1 7.2770 -4.6676 7.4978 19 1 5.7043 -6.2132 8.5063 20 1 6.7012 -6.7281 6.3561 21 6 3.3206 -2.3269 5.3469 22 6 2.0135 -1.7795 4.7600 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.5457 -0.1646 2.7181 31 1 3.7511 -2.6543 -0.3297 32 1 4.0865 -0.9132 -0.4857 33 1 5.0811 -1.9177 0.5960 34 1 5.2574 -2.2784 3.3038 35 1 4.5577 -3.6596 2.4208 36 1 3.4367 -5.1732 7.7708 37 1 4.0579 -1.5261 5.4012 38 1 3.1342 -2.7178 6.3472 39 1 1.7309 -0.8655 5.2824 40 1 1.2235 -2.5230 4.8666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260823410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:40 Heat of formation + Delta-G solvation = 17.208141 kcal Electronic energy + Delta-G solvation = -18346.988436 eV Core-core repulsion = 15740.169201 eV Total energy + Delta-G solvation = -2606.819235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01080 -36.28177 -34.72611 -32.88881 -31.55330 -29.27585 -27.51466 -27.13119 -25.65581 -24.50452 -22.39883 -20.98110 -20.17325 -18.55099 -17.25403 -16.50092 -15.86191 -14.98834 -14.53473 -14.29977 -13.79644 -13.38764 -13.20052 -12.88402 -12.62189 -12.56960 -12.28089 -12.21699 -11.86543 -11.59292 -11.55116 -11.22601 -11.17501 -10.92813 -10.80015 -10.59089 -10.49937 -10.20815 -9.74187 -9.51598 -9.13997 -8.65087 -8.23220 -7.80293 -6.98485 -5.92527 -3.99912 2.79182 3.34738 3.39615 3.40486 3.44225 3.66851 4.47471 4.83122 4.94684 5.04800 5.19774 5.36485 5.37434 5.48700 5.60342 5.60981 5.73343 5.82464 5.86431 5.97278 6.07189 6.14146 6.25644 6.28645 6.35947 6.52063 6.55060 6.69941 6.86775 6.89580 6.97858 7.21515 7.38750 7.59524 7.78091 7.80992 8.01191 8.03392 8.09614 8.23373 8.52718 9.03646 9.64005 11.12489 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044068 B = 0.005346 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.222513 B = 5236.386773 C = 5641.263860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.007 4.007 5 C -0.185 4.185 6 C -0.160 4.160 7 C 0.029 3.971 8 N -0.446 5.446 9 C 0.076 3.924 10 C -0.038 4.038 11 C 0.059 3.941 12 H 0.028 0.972 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.109 4.109 22 C -0.046 4.046 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.260 0.740 37 H 0.029 0.971 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 8.897 -12.852 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.117 4.117 5 C -0.210 4.210 6 C -0.166 4.166 7 C -0.082 4.082 8 N -0.122 5.122 9 C -0.067 4.067 10 C -0.077 4.077 11 C 0.040 3.960 12 H 0.046 0.954 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.147 4.147 22 C -0.084 4.084 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.112 8.760 -12.974 15.961 hybrid contribution 0.793 -0.489 0.385 1.008 sum -2.320 8.270 -12.590 15.240 Atomic orbital electron populations 1.21760 0.94025 1.02114 1.01628 1.19475 0.95907 0.94828 0.93614 1.21833 1.00790 0.95510 1.01687 1.20057 0.91562 1.03212 0.96864 1.20297 1.01966 1.06355 0.92417 1.19495 0.96919 1.03431 0.96712 1.20794 1.01244 1.03154 0.82996 1.43597 1.20375 1.39388 1.08883 1.21843 0.93933 1.01567 0.89333 1.20427 0.93724 0.94665 0.98841 1.18622 0.95909 0.93081 0.88367 0.95353 1.21162 0.95909 1.33661 1.04585 0.92866 1.24941 0.95473 0.96195 0.97261 1.69880 1.20890 1.43941 1.17865 0.86703 0.82694 0.79954 0.78882 1.20350 1.21311 1.20395 1.21665 0.93029 0.96934 1.03072 1.20121 0.99844 0.98708 0.89688 0.92439 0.92091 0.92773 0.91609 0.93121 0.92783 0.92148 0.85764 0.91660 0.90764 0.90063 0.92217 0.93109 0.92982 0.95235 0.88711 0.93546 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.77 37.16 0.33 -1.16 16 2 C -0.02 -0.23 2.92 -91.77 -0.27 -0.50 16 3 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 4 C -0.01 -0.12 5.83 -81.61 -0.48 -0.59 16 5 C -0.19 -3.37 9.99 -39.95 -0.40 -3.77 16 6 C -0.16 -3.36 5.94 -104.90 -0.62 -3.99 16 7 C 0.03 0.60 6.70 -81.79 -0.55 0.05 16 8 N -0.45 -7.69 3.14 -115.13 -0.36 -8.05 16 9 C 0.08 0.97 10.55 59.85 0.63 1.60 16 10 C -0.04 -0.84 5.05 -27.60 -0.14 -0.98 16 11 C 0.06 1.51 2.07 -91.52 -0.19 1.32 16 12 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 13 C -0.51 -14.19 8.55 -34.44 -0.29 -14.49 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.73 5.27 -17.82 -0.09 1.64 16 16 N -0.89 -25.43 11.30 55.43 0.63 -24.80 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.11 -2.69 5.08 -26.47 -0.13 -2.83 16 22 C -0.05 -1.00 6.29 -27.66 -0.17 -1.18 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.67 7.26 -51.93 -0.38 0.29 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.74 7.49 -51.93 -0.39 0.35 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.12 2.03 7.36 -52.49 -0.39 1.65 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.77 7.54 -51.93 -0.39 0.37 16 33 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 34 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.09 2.57 5.87 -51.93 -0.30 2.27 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -29.80 314.54 -8.93 -38.73 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.87 Total: -0.82 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.04 Total: -26.04 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.26 Total: -32.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.80 -8.93 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260823410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.937 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds