Wall clock time and date at job start Mon Mar 30 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47126 * 120.00227 * 2 1 3 5 5 C 1.35075 * 125.86064 * 325.01757 * 4 2 1 6 6 C 1.40249 * 107.26384 * 179.77973 * 5 4 2 7 7 C 1.35266 * 107.61383 * 0.16822 * 6 5 4 8 8 N 1.35824 * 108.18750 * 0.09458 * 7 6 5 9 9 C 1.46505 * 125.67499 * 179.87396 * 8 7 6 10 10 C 1.50895 * 124.00671 * 180.12084 * 7 6 5 11 11 C 1.53356 * 108.40365 * 16.63095 * 10 7 6 12 12 H 1.08991 * 109.46529 * 70.01402 * 11 10 7 13 13 C 1.50700 * 109.45386 * 189.99296 * 11 10 7 14 14 H 1.07998 * 120.00164 * 0.03492 * 13 11 10 15 15 C 1.37881 * 119.99950 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99728 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00092 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47289 * 59.99417 * 17 15 13 19 19 H 1.48499 * 109.47263 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46976 * 299.99815 * 17 15 13 21 21 C 1.53122 * 109.51616 * 309.99564 * 11 10 7 22 22 C 1.50745 * 128.04041 * 180.08769 * 6 5 4 23 23 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46738 * 299.99681 * 1 2 3 25 25 H 1.08995 * 109.47551 * 59.99711 * 1 2 3 26 26 H 1.09003 * 109.46738 * 240.00319 * 2 1 3 27 27 H 1.08994 * 109.47173 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00373 * 3 2 1 29 29 H 1.08993 * 109.46853 * 59.99968 * 3 2 1 30 30 H 1.08002 * 126.37134 * 0.05381 * 5 4 2 31 31 H 1.08993 * 109.46856 * 89.99850 * 9 8 7 32 32 H 1.08999 * 109.46902 * 209.99648 * 9 8 7 33 33 H 1.09001 * 109.46648 * 329.99669 * 9 8 7 34 34 H 1.08996 * 109.68054 * 256.90070 * 10 7 6 35 35 H 1.08993 * 109.67782 * 136.35500 * 10 7 6 36 36 H 0.96998 * 119.99996 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.47733 * 310.13955 * 21 11 10 38 38 H 1.08997 * 109.46977 * 190.12583 * 21 11 10 39 39 H 1.09006 * 109.68213 * 316.25463 * 22 6 5 40 40 H 1.09002 * 109.68057 * 76.80599 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4505 -0.6895 2.4492 6 6 2.2363 -1.4813 3.2993 7 6 3.2737 -1.9565 2.5729 8 7 3.1557 -1.4833 1.3053 9 6 4.0776 -1.7599 0.2008 10 6 4.3503 -2.8565 3.1278 11 6 3.8511 -3.4496 4.4510 12 1 3.0517 -4.1629 4.2506 13 6 4.9883 -4.1522 5.1468 14 1 5.9681 -4.1739 4.6931 15 6 4.7779 -4.7673 6.3627 16 7 3.5849 -4.7402 6.9155 17 14 6.1873 -5.6388 7.2249 18 1 7.2770 -4.6676 7.4978 19 1 5.7043 -6.2132 8.5063 20 1 6.7012 -6.7281 6.3561 21 6 3.3206 -2.3269 5.3469 22 6 2.0135 -1.7795 4.7600 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.5457 -0.1646 2.7181 31 1 3.7511 -2.6543 -0.3297 32 1 4.0865 -0.9132 -0.4857 33 1 5.0811 -1.9177 0.5960 34 1 5.2574 -2.2784 3.3038 35 1 4.5577 -3.6596 2.4208 36 1 3.4367 -5.1732 7.7708 37 1 4.0579 -1.5261 5.4012 38 1 3.1342 -2.7178 6.3472 39 1 1.7309 -0.8655 5.2824 40 1 1.2235 -2.5230 4.8666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260823410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:39 Heat of formation + Delta-G solvation = 2.857921 kcal Electronic energy + Delta-G solvation = -18347.610708 eV Core-core repulsion = 15740.169201 eV Total energy + Delta-G solvation = -2607.441507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41931 -37.95173 -35.92244 -34.56748 -33.31909 -30.93898 -29.19440 -27.96765 -26.97343 -26.31009 -23.93283 -22.36829 -22.00495 -19.86601 -18.82169 -18.43572 -17.28082 -16.54513 -16.29141 -15.43392 -15.01100 -14.98686 -14.50930 -14.40720 -14.24180 -13.78098 -13.74423 -13.53507 -13.25556 -12.97449 -12.92394 -12.79249 -12.62486 -12.34597 -12.21776 -12.09945 -11.92473 -11.72278 -11.53741 -11.49741 -11.08499 -10.66838 -10.35768 -9.20750 -8.47690 -8.05221 -6.21140 1.40476 1.43431 1.45181 1.52696 2.14801 2.15977 2.45935 3.20614 3.80221 3.99726 4.08398 4.20821 4.31134 4.39035 4.41902 4.47394 4.56271 4.62301 4.68751 4.80053 4.85204 4.88572 4.94387 4.97086 5.04877 5.06231 5.08653 5.13170 5.31609 5.37773 5.43214 5.46084 5.56253 5.68145 5.83962 5.98533 6.16113 6.27088 6.42607 6.51044 6.69922 6.90629 7.46685 8.98776 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044068 B = 0.005346 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.222513 B = 5236.386773 C = 5641.263860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 C -0.137 4.137 4 C 0.016 3.984 5 C -0.209 4.209 6 C -0.185 4.185 7 C 0.000 4.000 8 N -0.445 5.445 9 C 0.066 3.934 10 C -0.024 4.024 11 C 0.058 3.942 12 H -0.010 1.010 13 C -0.537 4.537 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.100 4.100 22 C -0.038 4.038 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 10.034 -15.156 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.038 4.038 3 C -0.194 4.194 4 C -0.095 4.095 5 C -0.233 4.233 6 C -0.192 4.192 7 C -0.111 4.111 8 N -0.120 5.120 9 C -0.075 4.075 10 C -0.062 4.062 11 C 0.039 3.961 12 H 0.008 0.992 13 C -0.575 4.575 14 H 0.074 0.926 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.138 4.138 22 C -0.076 4.076 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.656 9.897 -15.301 18.416 hybrid contribution 0.613 -0.823 1.042 1.463 sum -2.043 9.075 -14.259 17.025 Atomic orbital electron populations 1.21763 0.92950 1.01861 1.02824 1.19681 0.96751 0.95388 0.91968 1.21799 1.00579 0.94384 1.02661 1.20763 0.90010 1.01002 0.97745 1.20466 1.02840 1.07110 0.92914 1.19585 0.98358 1.04954 0.96257 1.20496 1.01256 1.04393 0.84982 1.43829 1.21094 1.38559 1.08567 1.22187 0.93165 1.03627 0.88498 1.20095 0.94080 0.95025 0.97044 1.18524 0.94395 0.92607 0.90541 0.99214 1.21530 0.96501 1.34248 1.05204 0.92610 1.25758 0.97958 0.96878 0.97964 1.70033 1.22821 1.44504 1.18107 0.85643 0.79574 0.78914 0.77698 1.19572 1.20973 1.19584 1.21471 0.94388 0.96405 1.01558 1.19954 0.97707 0.98685 0.91265 0.93443 0.92532 0.90022 0.89774 0.93435 0.89998 0.93065 0.84455 0.90285 0.87614 0.89878 0.92274 0.92567 0.93001 0.95706 0.91641 0.92105 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.77 71.98 0.63 -1.87 16 2 C -0.02 -0.38 2.92 -11.54 -0.03 -0.42 16 3 C -0.14 -2.41 9.18 71.98 0.66 -1.75 16 4 C 0.02 0.49 5.83 41.09 0.24 0.73 16 5 C -0.21 -7.45 9.99 22.03 0.22 -7.23 16 6 C -0.19 -7.91 5.94 -20.05 -0.12 -8.03 16 7 C 0.00 0.02 6.70 41.32 0.28 0.30 16 8 N -0.45 -14.58 3.14 -518.15 -1.63 -16.21 16 9 C 0.07 1.50 10.55 127.77 1.35 2.84 16 10 C -0.02 -1.09 5.05 30.03 0.15 -0.94 16 11 C 0.06 3.12 2.07 -11.38 -0.02 3.09 16 12 H -0.01 -0.62 8.11 -2.39 -0.02 -0.64 16 13 C -0.54 -30.39 8.55 25.60 0.22 -30.17 16 14 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 15 C 0.01 0.74 5.27 84.66 0.45 1.19 16 16 N -0.92 -54.27 11.30 21.45 0.24 -54.03 16 17 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.10 -5.18 5.08 30.76 0.16 -5.03 16 22 C -0.04 -1.75 6.29 29.99 0.19 -1.56 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 1.09 7.26 -2.39 -0.02 1.07 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.48 7.49 -2.39 -0.02 1.47 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.14 4.38 7.36 -2.91 -0.02 4.35 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 1.74 7.54 -2.39 -0.02 1.72 16 33 H 0.08 1.87 7.88 -2.39 -0.02 1.85 16 34 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.02 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.07 3.75 5.87 -2.39 -0.01 3.74 16 39 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -66.26 314.54 5.99 -60.27 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.99 Total: 12.66 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 4.36 Total: -48.84 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.39 Total: -70.24 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.26 5.99 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260823410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.130 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds