Wall clock time and date at job start Mon Mar 30 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46607 * 2 1 4 4 C 1.50700 * 109.47626 * 119.99856 * 2 1 3 5 5 C 1.35079 * 125.85589 * 324.97782 * 4 2 1 6 6 C 1.40250 * 107.26115 * 180.02562 * 5 4 2 7 7 C 1.35260 * 107.61134 * 0.07249 * 6 5 4 8 8 N 1.35824 * 108.18996 * 359.89760 * 7 6 5 9 9 C 1.46501 * 125.67221 * 180.09188 * 8 7 6 10 10 C 1.50898 * 124.00260 * 179.87090 * 7 6 5 11 11 C 1.53357 * 108.40621 * 343.37566 * 10 7 6 12 12 H 1.08997 * 109.46354 * 289.99229 * 11 10 7 13 13 C 1.50699 * 109.45992 * 170.00877 * 11 10 7 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 11 10 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 11 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 C 1.53117 * 109.51459 * 49.99688 * 11 10 7 22 22 C 1.50750 * 128.03734 * 180.16270 * 6 5 4 23 23 H 1.09005 * 109.46997 * 299.99530 * 1 2 3 24 24 H 1.08999 * 109.47718 * 60.00194 * 1 2 3 25 25 H 1.09008 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46893 * 240.00592 * 2 1 3 27 27 H 1.09002 * 109.47277 * 60.00027 * 3 2 1 28 28 H 1.08997 * 109.46672 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46923 * 300.00293 * 3 2 1 30 30 H 1.07998 * 126.36987 * 0.02562 * 5 4 2 31 31 H 1.09003 * 109.47059 * 89.99995 * 9 8 7 32 32 H 1.08995 * 109.47072 * 210.00608 * 9 8 7 33 33 H 1.08999 * 109.47098 * 330.00057 * 9 8 7 34 34 H 1.08999 * 109.67588 * 223.65710 * 10 7 6 35 35 H 1.08994 * 109.71471 * 103.12762 * 10 7 6 36 36 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 37 37 H 1.08993 * 109.47646 * 49.86413 * 21 11 10 38 38 H 1.09007 * 109.46847 * 169.87345 * 21 11 10 39 39 H 1.08997 * 109.68350 * 283.17778 * 22 6 5 40 40 H 1.09004 * 109.68045 * 43.73071 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4510 -0.6886 2.4495 6 6 2.2398 -1.4760 3.3009 7 6 3.2773 -1.9510 2.5746 8 7 3.1540 -1.4856 1.3045 9 6 4.0718 -1.7683 0.1982 10 6 4.3597 -2.8424 3.1321 11 6 4.3161 -2.7577 4.6627 12 1 4.6577 -1.7731 4.9819 13 6 5.2144 -3.8156 5.2499 14 1 5.7612 -4.4818 4.5990 15 6 5.3374 -3.9338 6.6181 16 7 4.6704 -3.1235 7.4107 17 14 6.4569 -5.2401 7.3459 18 1 5.6840 -6.4895 7.5627 19 1 7.5785 -5.5081 6.4102 20 1 6.9981 -4.7614 8.6432 21 6 2.8807 -2.9811 5.1467 22 6 2.0177 -1.7730 4.7621 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6765 1.9565 0.8900 28 1 3.1298 1.4426 -0.0005 29 1 1.6764 1.9564 -0.8900 30 1 0.5468 -0.1628 2.7185 31 1 3.7438 -2.6662 -0.3256 32 1 4.0776 -0.9259 -0.4934 33 1 5.0769 -1.9232 0.5905 34 1 5.3326 -2.5064 2.7736 35 1 4.1875 -3.8713 2.8164 36 1 4.7566 -3.2069 8.3733 37 1 2.4759 -3.8796 4.6810 38 1 2.8770 -3.1002 6.2302 39 1 2.3081 -0.9096 5.3605 40 1 0.9662 -2.0027 4.9343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260823412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:42 Heat of formation + Delta-G solvation = 2.822853 kcal Electronic energy + Delta-G solvation = -18349.363743 eV Core-core repulsion = 15741.920715 eV Total energy + Delta-G solvation = -2607.443028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.42122 -37.95266 -35.92264 -34.56949 -33.32187 -30.93737 -29.19595 -27.96826 -26.97706 -26.31235 -23.93237 -22.36898 -22.00081 -19.86335 -18.84298 -18.43648 -17.26168 -16.52699 -16.31671 -15.52012 -15.01800 -14.88644 -14.55724 -14.35864 -14.24151 -13.79352 -13.74743 -13.50573 -13.31601 -13.01083 -12.89387 -12.78530 -12.61817 -12.35976 -12.20149 -12.09188 -11.83937 -11.81835 -11.53390 -11.48404 -11.08578 -10.66668 -10.36090 -9.20788 -8.47701 -8.05529 -6.21363 1.40731 1.43374 1.43680 1.53954 2.14889 2.15825 2.45726 3.20382 3.80261 3.99471 4.08741 4.20890 4.30971 4.37995 4.40077 4.49306 4.56888 4.62181 4.67853 4.80193 4.84820 4.89211 4.94098 4.96687 5.04848 5.06615 5.08758 5.13059 5.31744 5.37591 5.43139 5.46115 5.56462 5.68240 5.83918 5.98438 6.16060 6.27079 6.42588 6.51108 6.69955 6.90625 7.46529 8.98614 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043685 B = 0.005350 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.805687 B = 5232.402183 C = 5624.926027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 C -0.138 4.138 4 C 0.016 3.984 5 C -0.209 4.209 6 C -0.185 4.185 7 C 0.001 3.999 8 N -0.445 5.445 9 C 0.066 3.934 10 C -0.024 4.024 11 C 0.058 3.942 12 H -0.010 1.010 13 C -0.536 4.536 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.267 1.267 20 H -0.284 1.284 21 C -0.100 4.100 22 C -0.038 4.038 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.261 0.739 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 5.916 -16.439 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.095 4.095 5 C -0.233 4.233 6 C -0.192 4.192 7 C -0.111 4.111 8 N -0.120 5.120 9 C -0.075 4.075 10 C -0.062 4.062 11 C 0.039 3.961 12 H 0.008 0.992 13 C -0.574 4.574 14 H 0.074 0.926 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.191 1.191 20 H -0.209 1.209 21 C -0.138 4.138 22 C -0.076 4.076 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.350 5.880 -16.559 18.369 hybrid contribution 0.669 -0.724 1.088 1.468 sum -4.681 5.155 -15.472 16.966 Atomic orbital electron populations 1.21759 0.92837 1.01956 1.02783 1.19680 0.96833 0.95244 0.92000 1.21810 1.00522 0.94566 1.02636 1.20760 0.90075 1.00913 0.97793 1.20467 1.02945 1.07025 0.92887 1.19584 0.98354 1.05094 0.96135 1.20490 1.00913 1.04876 0.84847 1.43822 1.21209 1.38584 1.08402 1.22191 0.93260 1.03655 0.88401 1.20099 0.93537 0.95792 0.96811 1.18531 0.93226 0.94815 0.89528 0.99193 1.21558 1.26534 1.17174 0.92102 0.92619 1.25759 0.97168 0.98024 0.97631 1.70043 1.42717 1.38968 1.03760 0.85585 0.79236 0.79262 0.77729 1.20097 1.19141 1.20950 1.21470 0.95702 0.94792 1.01877 1.19951 0.98705 0.97684 0.91267 0.92606 0.90056 0.93229 0.89671 0.93176 0.93582 0.89932 0.84456 0.89928 0.87766 0.90057 0.92529 0.92298 0.93009 0.95714 0.91634 0.93917 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.77 71.98 0.63 -1.81 16 2 C -0.02 -0.38 2.92 -11.54 -0.03 -0.41 16 3 C -0.14 -2.51 9.18 71.99 0.66 -1.85 16 4 C 0.02 0.49 5.83 41.10 0.24 0.73 16 5 C -0.21 -7.44 9.99 22.03 0.22 -7.22 16 6 C -0.19 -7.91 5.94 -20.05 -0.12 -8.03 16 7 C 0.00 0.02 6.70 41.32 0.28 0.30 16 8 N -0.44 -14.57 3.14 -518.17 -1.63 -16.20 16 9 C 0.07 1.49 10.56 127.77 1.35 2.84 16 10 C -0.02 -1.09 5.14 30.03 0.15 -0.93 16 11 C 0.06 3.10 2.07 -11.38 -0.02 3.07 16 12 H -0.01 -0.61 8.11 -2.39 -0.02 -0.63 16 13 C -0.54 -30.32 8.55 25.60 0.22 -30.11 16 14 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 15 C 0.01 0.72 5.27 84.66 0.45 1.17 16 16 N -0.92 -54.27 11.29 21.45 0.24 -54.03 16 17 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.10 -5.20 5.07 30.76 0.16 -5.04 16 22 C -0.04 -1.75 6.29 29.99 0.19 -1.56 16 23 H 0.05 1.06 7.26 -2.38 -0.02 1.05 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.09 1.48 7.47 -2.39 -0.02 1.46 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.14 4.38 7.36 -2.91 -0.02 4.35 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.74 7.52 -2.39 -0.02 1.72 16 33 H 0.08 1.87 7.54 -2.39 -0.02 1.85 16 34 H 0.06 2.38 7.73 -2.39 -0.02 2.36 16 35 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 36 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 37 H 0.02 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.07 3.76 5.86 -2.38 -0.01 3.74 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -66.30 313.84 5.99 -60.31 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.99 Total: 12.61 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 4.36 Total: -48.86 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.39 Total: -70.22 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.30 5.99 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260823412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.131 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds