Wall clock time and date at job start Mon Mar 30 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 C 1.52998 * 109.47317 * 119.99867 * 2 1 3 5 5 C 1.53004 * 109.47014 * 65.00044 * 4 2 1 6 6 H 1.09003 * 109.46852 * 304.93413 * 5 4 2 7 7 C 1.50695 * 109.47181 * 184.93619 * 5 4 2 8 8 H 1.07998 * 119.99763 * 270.89303 * 7 5 4 9 9 C 1.37877 * 119.99976 * 90.89477 * 7 5 4 10 10 N 1.31516 * 119.99722 * 187.11594 * 9 7 5 11 11 Si 1.86796 * 120.00230 * 7.11843 * 9 7 5 12 12 H 1.48501 * 109.46929 * 274.84623 * 11 9 7 13 13 H 1.48499 * 109.47126 * 34.84323 * 11 9 7 14 14 H 1.48501 * 109.47364 * 154.84501 * 11 9 7 15 15 N 1.46905 * 109.46908 * 64.93081 * 5 4 2 16 16 C 1.46900 * 111.00068 * 204.99844 * 15 5 4 17 17 C 1.50696 * 109.47216 * 180.02562 * 16 15 5 18 18 C 1.38228 * 120.00252 * 269.73126 * 17 16 15 19 19 C 1.38236 * 120.00012 * 179.76901 * 18 17 16 20 20 C 1.38237 * 119.99774 * 0.50028 * 19 18 17 21 21 C 1.38234 * 120.00104 * 359.74987 * 20 19 18 22 22 C 1.38238 * 119.99420 * 90.00438 * 17 16 15 23 23 H 1.08998 * 109.47481 * 59.99959 * 1 2 3 24 24 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47145 * 299.99786 * 1 2 3 26 26 H 1.08999 * 109.47178 * 240.00449 * 2 1 3 27 27 H 1.08998 * 109.47286 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47306 * 299.99996 * 3 2 1 29 29 H 1.09004 * 109.47433 * 60.00133 * 3 2 1 30 30 H 1.09002 * 109.47148 * 305.00176 * 4 2 1 31 31 H 1.08996 * 109.46945 * 184.99758 * 4 2 1 32 32 H 0.97001 * 119.99865 * 179.97438 * 10 9 7 33 33 H 1.00902 * 110.99649 * 81.05171 * 15 5 4 34 34 H 1.09008 * 109.47173 * 300.00809 * 16 15 5 35 35 H 1.09007 * 109.47110 * 60.00172 * 16 15 5 36 36 H 1.08002 * 120.00084 * 359.97438 * 18 17 16 37 37 H 1.08005 * 120.00134 * 180.23149 * 19 18 17 38 38 H 1.08003 * 119.99540 * 179.72905 * 20 19 18 39 39 H 1.07997 * 119.99732 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00852 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 1 0.5561 -2.2707 1.0539 7 6 2.0308 -2.8787 2.4715 8 1 3.0101 -3.3241 2.5666 9 6 1.1425 -2.9353 3.5245 10 7 1.5325 -3.4052 4.6893 11 14 -0.6150 -2.3448 3.2966 12 1 -0.6760 -0.8770 3.5140 13 1 -1.0684 -2.6603 1.9182 14 1 -1.4976 -3.0274 4.2765 15 7 2.3153 -2.8434 0.0585 16 6 1.5624 -4.0156 -0.4072 17 6 2.2893 -4.6529 -1.5632 18 6 2.0116 -4.2557 -2.8578 19 6 2.6819 -4.8369 -3.9179 20 6 3.6224 -5.8226 -3.6841 21 6 3.8964 -6.2235 -2.3898 22 6 3.2297 -5.6387 -1.3293 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2950 32 1 0.9077 -3.4447 5.4302 33 1 3.2616 -3.0950 0.3023 34 1 1.4717 -4.7358 0.4061 35 1 0.5686 -3.7046 -0.7294 36 1 1.2734 -3.4889 -3.0408 37 1 2.4676 -4.5239 -4.9292 38 1 4.1429 -6.2797 -4.5127 39 1 4.6309 -6.9939 -2.2072 40 1 3.4433 -5.9525 -0.3182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261033632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:10 Heat of formation + Delta-G solvation = 0.601519 kcal Electronic energy + Delta-G solvation = -18061.222465 eV Core-core repulsion = 15453.683113 eV Total energy + Delta-G solvation = -2607.539352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.99384 -36.97044 -34.37470 -32.58368 -30.99147 -30.63148 -28.14333 -26.66679 -25.01576 -24.25169 -22.29149 -20.75302 -20.43246 -18.92258 -17.20824 -16.46667 -15.07373 -14.94313 -14.77128 -14.35191 -13.89632 -13.62589 -13.37262 -13.17010 -12.73542 -12.57570 -12.42072 -12.11625 -11.80288 -11.58100 -11.38907 -11.21406 -11.00262 -10.87010 -10.72276 -10.39590 -10.21831 -9.92694 -9.74385 -9.62051 -9.09234 -8.67321 -8.63620 -8.45475 -7.28692 -6.15587 -4.15868 1.62236 1.65434 3.24042 3.31277 3.32096 4.04360 4.34621 5.09378 5.12583 5.15343 5.20423 5.35845 5.55823 5.58922 5.61906 5.68822 5.75942 5.81967 6.04826 6.06888 6.21133 6.25702 6.29897 6.35911 6.40041 6.50709 6.58461 6.64505 6.70917 6.71541 6.72527 6.78717 7.02424 7.17164 7.21383 7.26953 7.38628 7.57831 8.00095 8.37754 8.53027 8.89478 9.48852 10.97619 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.007208 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.203192 B = 3883.628991 C = 4809.142342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.092 4.092 5 C 0.171 3.829 6 H 0.045 0.955 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.076 3.924 10 N -0.897 5.897 11 Si 0.871 3.129 12 H -0.272 1.272 13 H -0.264 1.264 14 H -0.290 1.290 15 N -0.675 5.675 16 C 0.098 3.902 17 C -0.065 4.065 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.114 4.114 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.332 0.668 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 0.154 -13.827 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.131 4.131 5 C 0.063 3.937 6 H 0.063 0.937 7 C -0.581 4.581 8 H 0.090 0.910 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.699 3.301 12 H -0.197 1.197 13 H -0.189 1.189 14 H -0.216 1.216 15 N -0.304 5.304 16 C -0.031 4.031 17 C -0.065 4.065 18 C -0.122 4.122 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.133 4.133 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.106 0.553 -14.085 14.096 hybrid contribution -0.730 -0.365 0.889 1.207 sum -0.624 0.188 -13.196 13.212 Atomic orbital electron populations 1.21881 0.96878 1.01428 1.00116 1.21150 0.94605 0.94752 1.00946 1.21858 1.00580 0.97350 1.00385 1.21743 1.00049 0.96455 0.94844 1.19772 0.94999 0.90911 0.88017 0.93680 1.21725 1.02424 1.36501 0.97436 0.91028 1.25030 0.98437 0.94301 0.94933 1.69934 1.35488 1.46402 1.01597 0.86935 0.85552 0.79546 0.78057 1.19748 1.18912 1.21646 1.60954 1.05547 1.25318 1.38628 1.20783 0.96143 0.92927 0.93266 1.20108 0.96214 0.95129 0.95067 1.21044 0.99856 0.99211 0.92115 1.21086 0.97290 0.97366 0.98676 1.21037 0.98947 0.98430 0.96671 1.21082 0.99986 1.00224 0.92858 1.21173 0.96284 0.96636 0.99166 0.93941 0.92639 0.93683 0.90296 0.93175 0.93914 0.93493 0.93163 0.93006 0.92663 0.85107 0.93722 0.91619 0.86242 0.86657 0.86786 0.86574 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.95 37.16 0.33 -2.15 16 2 C -0.10 -1.68 2.86 -90.62 -0.26 -1.94 16 3 C -0.14 -2.18 9.19 37.16 0.34 -1.84 16 4 C -0.09 -1.91 4.30 -26.73 -0.12 -2.03 16 5 C 0.17 3.83 1.46 -68.86 -0.10 3.73 16 6 H 0.05 1.05 3.01 -51.93 -0.16 0.90 16 7 C -0.54 -14.53 8.72 -34.44 -0.30 -14.83 16 8 H 0.07 2.10 7.97 -52.49 -0.42 1.68 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 11 Si 0.87 21.19 27.15 -169.99 -4.61 16.58 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.26 -6.14 6.33 56.52 0.36 -5.78 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 N -0.68 -13.34 5.60 -109.21 -0.61 -13.95 16 16 C 0.10 1.81 5.61 -4.98 -0.03 1.78 16 17 C -0.06 -1.04 5.39 -104.63 -0.56 -1.61 16 18 C -0.10 -1.50 9.70 -39.59 -0.38 -1.89 16 19 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 20 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 21 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 22 C -0.11 -1.73 9.70 -39.58 -0.38 -2.12 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.01 6.46 -51.93 -0.34 0.68 16 25 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.08 1.40 7.62 -51.93 -0.40 1.01 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.33 6.74 8.40 -39.29 -0.33 6.41 16 34 H 0.04 0.91 7.94 -51.92 -0.41 0.50 16 35 H 0.07 1.19 8.00 -51.92 -0.42 0.78 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.11 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -28.41 323.54 -9.03 -37.45 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.71 Total: 8.06 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -2.75 Total: -26.90 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.16 Total: -40.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.61 Total: 16.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.41 -9.03 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.048 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds