Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 C 1.52998 * 109.47317 * 119.99867 * 2 1 3 5 5 C 1.53004 * 109.47014 * 65.00044 * 4 2 1 6 6 H 1.09003 * 109.46852 * 304.93413 * 5 4 2 7 7 C 1.50695 * 109.47181 * 184.93619 * 5 4 2 8 8 H 1.07998 * 119.99763 * 270.89303 * 7 5 4 9 9 C 1.37877 * 119.99976 * 90.89477 * 7 5 4 10 10 N 1.31516 * 119.99722 * 187.11594 * 9 7 5 11 11 Si 1.86796 * 120.00230 * 7.11843 * 9 7 5 12 12 H 1.48501 * 109.46929 * 274.84623 * 11 9 7 13 13 H 1.48499 * 109.47126 * 34.84323 * 11 9 7 14 14 H 1.48501 * 109.47364 * 154.84501 * 11 9 7 15 15 N 1.46905 * 109.46908 * 64.93081 * 5 4 2 16 16 C 1.46900 * 111.00068 * 204.99844 * 15 5 4 17 17 C 1.50696 * 109.47216 * 180.02562 * 16 15 5 18 18 C 1.38228 * 120.00252 * 269.73126 * 17 16 15 19 19 C 1.38236 * 120.00012 * 179.76901 * 18 17 16 20 20 C 1.38237 * 119.99774 * 0.50028 * 19 18 17 21 21 C 1.38234 * 120.00104 * 359.74987 * 20 19 18 22 22 C 1.38238 * 119.99420 * 90.00438 * 17 16 15 23 23 H 1.08998 * 109.47481 * 59.99959 * 1 2 3 24 24 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47145 * 299.99786 * 1 2 3 26 26 H 1.08999 * 109.47178 * 240.00449 * 2 1 3 27 27 H 1.08998 * 109.47286 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47306 * 299.99996 * 3 2 1 29 29 H 1.09004 * 109.47433 * 60.00133 * 3 2 1 30 30 H 1.09002 * 109.47148 * 305.00176 * 4 2 1 31 31 H 1.08996 * 109.46945 * 184.99758 * 4 2 1 32 32 H 0.97001 * 119.99865 * 179.97438 * 10 9 7 33 33 H 1.00902 * 110.99649 * 81.05171 * 15 5 4 34 34 H 1.09008 * 109.47173 * 300.00809 * 16 15 5 35 35 H 1.09007 * 109.47110 * 60.00172 * 16 15 5 36 36 H 1.08002 * 120.00084 * 359.97438 * 18 17 16 37 37 H 1.08005 * 120.00134 * 180.23149 * 19 18 17 38 38 H 1.08003 * 119.99540 * 179.72905 * 20 19 18 39 39 H 1.07997 * 119.99732 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00852 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 1 0.5561 -2.2707 1.0539 7 6 2.0308 -2.8787 2.4715 8 1 3.0101 -3.3241 2.5666 9 6 1.1425 -2.9353 3.5245 10 7 1.5325 -3.4052 4.6893 11 14 -0.6150 -2.3448 3.2966 12 1 -0.6760 -0.8770 3.5140 13 1 -1.0684 -2.6603 1.9182 14 1 -1.4976 -3.0274 4.2765 15 7 2.3153 -2.8434 0.0585 16 6 1.5624 -4.0156 -0.4072 17 6 2.2893 -4.6529 -1.5632 18 6 2.0116 -4.2557 -2.8578 19 6 2.6819 -4.8369 -3.9179 20 6 3.6224 -5.8226 -3.6841 21 6 3.8964 -6.2235 -2.3898 22 6 3.2297 -5.6387 -1.3293 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2950 32 1 0.9077 -3.4447 5.4302 33 1 3.2616 -3.0950 0.3023 34 1 1.4717 -4.7358 0.4061 35 1 0.5686 -3.7046 -0.7294 36 1 1.2734 -3.4889 -3.0408 37 1 2.4676 -4.5239 -4.9292 38 1 4.1429 -6.2797 -4.5127 39 1 4.6309 -6.9939 -2.2072 40 1 3.4433 -5.9525 -0.3182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = -15.152638 kcal Electronic energy + Delta-G solvation = -18061.905616 eV Core-core repulsion = 15453.683113 eV Total energy + Delta-G solvation = -2608.222504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.14342 -38.56676 -35.82077 -34.56823 -32.47680 -31.69394 -29.69274 -27.94672 -26.93899 -25.66663 -23.36502 -22.20948 -21.92866 -20.44842 -19.26397 -17.59297 -16.80296 -16.32876 -16.05166 -15.89036 -15.35595 -15.13780 -14.82348 -14.54994 -14.23358 -13.97639 -13.81093 -13.54330 -13.16762 -13.13348 -12.90011 -12.80457 -12.65243 -12.40320 -11.84356 -11.83012 -11.78500 -11.66819 -11.33783 -11.24629 -10.94615 -10.73406 -9.74373 -9.62345 -9.01307 -8.34903 -6.38432 0.52036 0.58477 1.28863 1.29526 1.37934 2.27881 2.93015 3.00738 3.72527 4.00897 4.10908 4.21923 4.23588 4.24969 4.30341 4.35904 4.53608 4.67987 4.71713 4.82936 4.86080 4.90903 4.94187 5.03957 5.06595 5.18995 5.21185 5.24034 5.25485 5.29848 5.55950 5.58196 5.63802 5.65981 5.68061 5.77969 5.86271 6.04884 6.20538 6.42223 6.63613 6.78794 7.30101 8.81873 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.007208 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.203192 B = 3883.628991 C = 4809.142342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.089 4.089 5 C 0.179 3.821 6 H 0.044 0.956 7 C -0.540 4.540 8 H 0.030 0.970 9 C 0.019 3.981 10 N -0.946 5.946 11 Si 0.929 3.071 12 H -0.260 1.260 13 H -0.246 1.246 14 H -0.290 1.290 15 N -0.661 5.661 16 C 0.104 3.896 17 C -0.085 4.085 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.134 4.134 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.327 0.673 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 1.105 -17.148 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.127 4.127 5 C 0.070 3.930 6 H 0.062 0.938 7 C -0.579 4.579 8 H 0.048 0.952 9 C -0.179 4.179 10 N -0.586 5.586 11 Si 0.753 3.247 12 H -0.184 1.184 13 H -0.170 1.170 14 H -0.216 1.216 15 N -0.289 5.289 16 C -0.026 4.026 17 C -0.086 4.086 18 C -0.130 4.130 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.153 4.153 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.588 1.509 -17.434 17.509 hybrid contribution -0.388 -0.746 1.864 2.045 sum -0.976 0.763 -15.570 15.619 Atomic orbital electron populations 1.21881 0.96152 1.00811 1.01456 1.21059 0.95186 0.95951 0.98602 1.21805 1.00766 0.95584 1.01582 1.21625 0.99499 0.95393 0.96219 1.19662 0.94971 0.91893 0.86521 0.93840 1.22038 1.00571 1.35828 0.99461 0.95150 1.25842 1.02770 0.94773 0.94516 1.70080 1.37070 1.48767 1.02695 0.86006 0.80296 0.79585 0.78801 1.18444 1.17027 1.21638 1.60967 1.05138 1.26040 1.36791 1.20722 0.96687 0.91681 0.93473 1.19908 0.97383 0.96352 0.94940 1.21183 1.00395 0.99664 0.91738 1.21456 0.96380 0.96665 0.99543 1.21468 0.98256 0.97642 0.97070 1.21357 0.99871 1.00334 0.92794 1.21200 0.97199 0.97420 0.99445 0.90985 0.94200 0.93993 0.90311 0.92965 0.91445 0.93550 0.94890 0.93853 0.92666 0.85690 0.96785 0.91217 0.85491 0.83550 0.83433 0.84451 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 8.95 71.98 0.64 -3.92 16 2 C -0.09 -2.95 2.86 -10.80 -0.03 -2.98 16 3 C -0.14 -3.84 9.19 71.98 0.66 -3.18 16 4 C -0.09 -3.67 4.30 30.59 0.13 -3.54 16 5 C 0.18 8.12 1.46 44.17 0.06 8.19 16 6 H 0.04 2.02 3.01 -2.39 -0.01 2.01 16 7 C -0.54 -30.29 8.72 25.60 0.22 -30.06 16 8 H 0.03 1.90 7.97 -2.91 -0.02 1.88 16 9 C 0.02 1.12 5.47 84.65 0.46 1.58 16 10 N -0.95 -59.13 13.96 21.45 0.30 -58.84 16 11 Si 0.93 44.18 27.15 68.60 1.86 46.04 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.25 -10.90 6.33 99.48 0.63 -10.27 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 15 N -0.66 -26.65 5.60 -499.44 -2.80 -29.45 16 16 C 0.10 3.92 5.61 85.56 0.48 4.40 16 17 C -0.09 -2.74 5.39 -19.87 -0.11 -2.85 16 18 C -0.11 -3.02 9.70 22.27 0.22 -2.80 16 19 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 20 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 21 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 22 C -0.13 -4.11 9.70 22.27 0.22 -3.89 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 1.36 6.46 -2.39 -0.02 1.34 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 26 H 0.08 2.62 7.62 -2.39 -0.02 2.60 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.03 1.45 7.94 -2.39 -0.02 1.43 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.33 13.84 8.40 -89.69 -0.75 13.09 16 34 H 0.01 0.60 7.94 -2.38 -0.02 0.58 16 35 H 0.07 2.54 8.00 -2.38 -0.02 2.52 16 36 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -63.66 323.54 3.16 -60.50 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.17 Total: 28.57 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 3.63 Total: -46.83 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -2.50 Total: -88.29 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.86 Total: 46.04 kcal Total: -63.66 3.16 -60.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.343 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds