Wall clock time and date at job start Mon Mar 30 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.53003 * 109.46790 * 119.99841 * 2 1 3 5 5 C 1.52997 * 109.46992 * 175.00254 * 4 2 1 6 6 H 1.09001 * 109.46922 * 54.99919 * 5 4 2 7 7 C 1.50706 * 109.47103 * 174.99572 * 5 4 2 8 8 H 1.07995 * 120.00167 * 239.72222 * 7 5 4 9 9 C 1.37879 * 119.99394 * 59.99920 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47405 * 60.00219 * 11 9 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 15 15 N 1.46898 * 109.47123 * 294.99554 * 5 4 2 16 16 C 1.46906 * 110.99961 * 155.00049 * 15 5 4 17 17 C 1.50699 * 109.46941 * 180.02562 * 16 15 5 18 18 C 1.38240 * 119.99861 * 269.72548 * 17 16 15 19 19 C 1.38235 * 119.99673 * 179.76854 * 18 17 16 20 20 C 1.38230 * 120.00076 * 0.50722 * 19 18 17 21 21 C 1.38234 * 119.99991 * 359.74967 * 20 19 18 22 22 C 1.38230 * 120.00025 * 90.00123 * 17 16 15 23 23 H 1.08990 * 109.47447 * 300.00690 * 1 2 3 24 24 H 1.09000 * 109.46671 * 60.00717 * 1 2 3 25 25 H 1.09005 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47454 * 239.99687 * 2 1 3 27 27 H 1.09006 * 109.46715 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46818 * 299.99193 * 3 2 1 29 29 H 1.09002 * 109.47267 * 59.99573 * 3 2 1 30 30 H 1.09002 * 109.47471 * 54.99997 * 4 2 1 31 31 H 1.09006 * 109.46544 * 295.00157 * 4 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 33 33 H 1.00893 * 111.00338 * 278.95429 * 15 5 4 34 34 H 1.08996 * 109.46904 * 300.00505 * 16 15 5 35 35 H 1.08996 * 109.46971 * 60.00210 * 16 15 5 36 36 H 1.08001 * 120.00002 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.99628 * 180.22828 * 19 18 17 38 38 H 1.08000 * 120.00292 * 179.72061 * 20 19 18 39 39 H 1.08001 * 119.99929 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99912 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1612 1.0529 7 6 4.0772 -1.4301 2.4725 8 1 4.7686 -0.8751 3.0891 9 6 3.6677 -2.6892 2.8574 10 7 2.8304 -3.3675 2.1034 11 14 4.3024 -3.4315 4.4497 12 1 3.9134 -2.5636 5.5901 13 1 3.7163 -4.7835 4.6336 14 1 5.7824 -3.5380 4.3910 15 7 3.9490 -1.6896 0.0598 16 6 5.3052 -1.3708 -0.4063 17 6 5.6632 -2.2692 -1.5620 18 6 6.2841 -3.4820 -1.3282 19 6 6.6081 -4.3083 -2.3880 20 6 6.3209 -3.9171 -3.6823 21 6 5.7049 -2.7019 -3.9165 22 6 5.3760 -1.8780 -2.8563 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7515 -0.1582 2.1370 32 1 2.5426 -4.2534 2.3741 33 1 3.8708 -2.6652 0.3047 34 1 5.3431 -0.3306 -0.7298 35 1 6.0143 -1.5244 0.4070 36 1 6.5121 -3.7859 -0.3172 37 1 7.0898 -5.2574 -2.2050 38 1 6.5782 -4.5606 -4.5106 39 1 5.4809 -2.3961 -4.9278 40 1 4.8954 -0.9284 -3.0394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:12 Heat of formation + Delta-G solvation = -10.797026 kcal Electronic energy + Delta-G solvation = -18217.324277 eV Core-core repulsion = 15609.290647 eV Total energy + Delta-G solvation = -2608.033630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08462 -38.41478 -35.73218 -34.32129 -31.99512 -31.67916 -29.33776 -27.84479 -26.90589 -25.44427 -23.34506 -22.50217 -21.83531 -20.29355 -18.37763 -17.60136 -16.95174 -16.09250 -16.01498 -15.78293 -15.26649 -15.04083 -14.56831 -14.38508 -14.18670 -13.76221 -13.59586 -13.43947 -12.95577 -12.91869 -12.81184 -12.55928 -12.53392 -12.43200 -12.05005 -11.81410 -11.62508 -11.57830 -11.21681 -11.08938 -10.88666 -10.44247 -9.72698 -9.56013 -8.72392 -7.98970 -6.26932 0.55877 0.59934 1.36005 1.38385 1.44664 2.39346 2.96385 3.12799 3.99177 4.06085 4.23677 4.31848 4.32767 4.37617 4.39705 4.44297 4.62649 4.74119 4.84970 4.91261 4.96044 4.96548 5.05157 5.11266 5.20958 5.22693 5.27097 5.30101 5.46326 5.50471 5.65572 5.66336 5.68354 5.84541 5.89649 5.94360 6.12787 6.22889 6.26359 6.61922 6.99629 7.21806 7.48291 8.89085 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.008621 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.798895 B = 3247.062722 C = 4702.321334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.080 4.080 5 C 0.210 3.790 6 H 0.021 0.979 7 C -0.574 4.574 8 H 0.035 0.965 9 C 0.038 3.962 10 N -0.892 5.892 11 Si 0.939 3.061 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.279 1.279 15 N -0.672 5.672 16 C 0.105 3.895 17 C -0.083 4.083 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.114 4.114 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.346 0.654 34 H 0.064 0.936 35 H 0.006 0.994 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 1.344 -10.266 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.190 4.190 4 C -0.119 4.119 5 C 0.101 3.899 6 H 0.039 0.961 7 C -0.614 4.614 8 H 0.053 0.947 9 C -0.163 4.163 10 N -0.531 5.531 11 Si 0.765 3.235 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.205 1.205 15 N -0.305 5.305 16 C -0.025 4.025 17 C -0.083 4.083 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.133 4.133 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.284 1.578 -10.730 11.084 hybrid contribution 0.908 -0.872 2.273 2.598 sum 3.191 0.707 -8.457 9.067 Atomic orbital electron populations 1.21761 0.95553 1.00727 1.01279 1.21033 0.95000 0.95871 0.98950 1.21751 1.00292 0.95979 1.00992 1.21349 0.96869 0.99513 0.94179 1.19094 0.92950 0.91099 0.86744 0.96125 1.22060 1.27928 1.02171 1.09239 0.94665 1.25492 0.94549 0.97276 0.99002 1.69835 1.32552 1.12436 1.38248 0.85930 0.78457 0.77746 0.81339 1.20240 1.20569 1.20462 1.61012 1.20738 1.11091 1.37644 1.20697 0.91609 0.97183 0.93014 1.20031 0.97507 0.95521 0.95290 1.21167 1.00230 0.94901 0.99212 1.21343 1.00421 0.99779 0.92857 1.21443 0.99210 0.97026 0.96980 1.21454 0.98542 0.94533 0.99497 1.21167 0.99556 1.00738 0.91816 0.93344 0.91768 0.94142 0.92029 0.94022 0.91959 0.93556 0.92137 0.96301 0.92679 0.83301 0.91760 0.97551 0.88029 0.84491 0.83289 0.83454 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.19 71.98 0.66 -3.83 16 2 C -0.09 -3.46 2.86 -10.79 -0.03 -3.49 16 3 C -0.13 -4.47 8.96 71.98 0.64 -3.82 16 4 C -0.08 -3.80 4.06 30.59 0.12 -3.67 16 5 C 0.21 10.40 2.08 44.17 0.09 10.49 16 6 H 0.02 1.01 6.00 -2.39 -0.01 1.00 16 7 C -0.57 -31.49 8.64 25.60 0.22 -31.27 16 8 H 0.03 1.97 7.81 -2.91 -0.02 1.94 16 9 C 0.04 2.06 5.03 84.66 0.43 2.49 16 10 N -0.89 -48.53 9.71 21.45 0.21 -48.32 16 11 Si 0.94 43.21 29.54 68.60 2.03 45.23 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 N -0.67 -31.71 5.60 -499.46 -2.80 -34.50 16 16 C 0.10 4.40 5.61 85.56 0.48 4.88 16 17 C -0.08 -3.07 5.39 -19.87 -0.11 -3.17 16 18 C -0.14 -4.83 9.70 22.27 0.22 -4.61 16 19 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 20 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 21 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 22 C -0.11 -3.59 9.70 22.27 0.22 -3.37 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 2.54 7.62 -2.39 -0.02 2.52 16 27 H 0.04 1.48 6.46 -2.38 -0.02 1.47 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 3.20 6.22 -2.39 -0.01 3.19 16 31 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.35 18.17 6.38 -89.70 -0.57 17.60 16 34 H 0.06 2.54 8.00 -2.39 -0.02 2.52 16 35 H 0.01 0.29 7.94 -2.39 -0.02 0.27 16 36 H 0.10 3.81 8.06 -2.91 -0.02 3.78 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -57.32 321.42 3.47 -53.85 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.42 Total: 32.36 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 3.61 Total: -48.61 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.59 Total: -82.83 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.32 3.47 -53.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.050 kcal (2) G-P(sol) polarization free energy of solvation -57.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds