Wall clock time and date at job start Mon Mar 30 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47422 * 2 1 4 4 C 1.50704 * 109.47240 * 239.99463 * 2 1 3 5 5 H 1.08002 * 119.99931 * 240.00197 * 4 2 1 6 6 C 1.37870 * 119.99794 * 60.00088 * 4 2 1 7 7 N 1.31516 * 120.00352 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46869 * 59.99831 * 8 6 4 10 10 H 1.48494 * 109.47306 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46919 * 300.00113 * 8 6 4 12 12 C 1.50706 * 109.47041 * 119.99589 * 2 1 3 13 13 C 1.38228 * 119.99983 * 60.21359 * 12 2 1 14 14 C 1.38238 * 120.00110 * 180.21781 * 13 12 2 15 15 C 1.38234 * 119.99675 * 359.52133 * 14 13 12 16 16 C 1.50702 * 120.00257 * 180.25732 * 15 14 13 17 17 C 1.53004 * 109.46774 * 90.00005 * 16 15 14 18 18 N 1.46901 * 109.46788 * 180.02562 * 17 16 15 19 19 C 1.46896 * 111.00079 * 66.05139 * 18 17 16 20 20 C 1.46903 * 110.99691 * 190.00197 * 18 17 16 21 21 C 1.38235 * 120.00220 * 0.28720 * 15 14 13 22 22 C 1.38234 * 119.99892 * 239.99579 * 12 2 1 23 23 H 1.08995 * 109.47167 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47082 * 300.00357 * 1 2 3 25 25 H 1.08997 * 109.46911 * 60.00404 * 1 2 3 26 26 H 0.96995 * 120.00626 * 180.02562 * 7 6 4 27 27 H 1.08004 * 120.00281 * 0.02562 * 13 12 2 28 28 H 1.08002 * 120.00519 * 179.80752 * 14 13 12 29 29 H 1.08993 * 109.47429 * 210.00613 * 16 15 14 30 30 H 1.08998 * 109.46961 * 330.00864 * 16 15 14 31 31 H 1.08993 * 109.47638 * 300.00479 * 17 16 15 32 32 H 1.09003 * 109.47116 * 60.00528 * 17 16 15 33 33 H 1.09001 * 109.47135 * 59.99852 * 19 18 17 34 34 H 1.09006 * 109.47326 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47275 * 299.99853 * 19 18 17 36 36 H 1.09005 * 109.47387 * 60.00278 * 20 18 17 37 37 H 1.08997 * 109.47193 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.47392 * 300.00193 * 20 18 17 39 39 H 1.07996 * 120.00471 * 179.97438 * 21 15 14 40 40 H 1.08001 * 120.00324 * 0.02562 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5206 -4.0075 10 1 1.8260 -0.4210 -5.2203 11 1 3.8064 -1.1212 -4.0080 12 6 2.0323 -0.7104 1.2306 13 6 1.7020 -2.0350 1.4472 14 6 2.1591 -2.6853 2.5782 15 6 2.9546 -2.0137 3.4876 16 6 3.4577 -2.7242 4.7177 17 6 4.8052 -3.3813 4.4118 18 7 5.2953 -4.0744 5.6107 19 6 4.4253 -5.2062 5.9571 20 6 6.6856 -4.5143 5.4330 21 6 3.2882 -0.6902 3.2690 22 6 2.8271 -0.0385 2.1404 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7090 1.1611 -3.4844 27 1 1.0843 -2.5611 0.7343 28 1 1.8985 -3.7194 2.7490 29 1 3.5794 -2.0057 5.5281 30 1 2.7398 -3.4888 5.0147 31 1 4.6834 -4.0999 3.6013 32 1 5.5231 -2.6168 4.1146 33 1 4.4030 -5.9142 5.1286 34 1 4.8113 -5.7019 6.8479 35 1 3.4163 -4.8427 6.1515 36 1 7.3199 -3.6476 5.2465 37 1 7.0236 -5.0239 6.3352 38 1 6.7452 -5.1972 4.5855 39 1 3.9094 -0.1653 3.9796 40 1 3.0878 0.9956 1.9696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:51 Heat of formation + Delta-G solvation = -5.233433 kcal Electronic energy + Delta-G solvation = -17472.194090 eV Core-core repulsion = 14864.401715 eV Total energy + Delta-G solvation = -2607.792375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40809 -38.48773 -36.42620 -34.05919 -32.04981 -31.63499 -28.84960 -28.42873 -27.22034 -25.51542 -23.57406 -23.09615 -21.86975 -20.96698 -18.30593 -17.30251 -16.72805 -16.57502 -16.04946 -15.82354 -15.62320 -15.37096 -14.64462 -14.31390 -14.21559 -13.84492 -13.71308 -13.40167 -13.24003 -12.89275 -12.86613 -12.79748 -12.58627 -12.43852 -12.25782 -12.15498 -12.10472 -11.81286 -11.53785 -11.15200 -10.98940 -10.47891 -9.65749 -9.33660 -9.14564 -8.10480 -6.24894 0.64889 0.67134 1.40593 1.41542 1.49591 2.41765 2.94368 3.12984 3.18243 3.98013 4.09906 4.19048 4.28353 4.29695 4.36956 4.42006 4.52358 4.65522 4.68736 4.76004 4.80406 4.80862 4.86994 5.01351 5.01522 5.03340 5.08817 5.16486 5.22267 5.33483 5.41643 5.53641 5.69254 5.71888 5.82304 6.04962 6.06276 6.11201 6.13887 6.31306 6.39674 6.83589 7.42880 8.93820 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.004477 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.702160 B = 6252.647273 C = 6699.740273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.069 3.931 3 H 0.002 0.998 4 C -0.522 4.522 5 H 0.049 0.951 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.273 1.273 12 C -0.063 4.063 13 C -0.125 4.125 14 C -0.118 4.118 15 C -0.104 4.104 16 C -0.059 4.059 17 C 0.064 3.936 18 N -0.558 5.558 19 C 0.018 3.982 20 C 0.022 3.978 21 C -0.112 4.112 22 C -0.144 4.144 23 H 0.031 0.969 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.262 0.738 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.140 0.860 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -9.868 15.754 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 H 0.020 0.980 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.199 1.199 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.096 4.096 17 C -0.064 4.064 18 N -0.282 5.282 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.162 4.162 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.152 0.848 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.041 0.959 39 H 0.157 0.843 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.774 -9.430 16.014 19.780 hybrid contribution 0.096 -0.568 -2.064 2.143 sum 6.869 -9.998 13.949 18.486 Atomic orbital electron populations 1.21616 0.97479 0.99135 0.99609 1.17757 0.93128 0.93898 0.90131 0.97962 1.21354 1.31127 1.12270 0.91227 0.93247 1.25724 0.95252 0.95704 1.01781 1.70003 1.37586 1.24045 1.24106 0.85672 0.78720 0.78868 0.78789 1.19545 1.20703 1.19874 1.20433 0.95556 0.94870 0.95415 1.21008 1.01120 0.94445 0.97764 1.21169 0.98468 1.00031 0.93901 1.19889 0.98959 0.94231 0.97363 1.20426 0.95798 0.99411 0.93984 1.22063 0.96543 0.97413 0.90403 1.62032 1.03398 1.27268 1.35549 1.22510 0.98155 0.91787 1.00539 1.22433 0.88791 1.00278 1.01074 1.21161 1.00052 0.94717 0.97074 1.21205 0.99492 1.00109 0.95384 0.95030 0.95775 0.92206 0.92867 0.87492 0.84807 0.89807 0.90282 0.95539 0.91127 0.95846 0.90245 0.90666 0.91220 0.90035 0.95890 0.84257 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.79 71.98 0.63 -5.43 16 2 C 0.07 3.62 2.48 -12.28 -0.03 3.59 16 3 H 0.00 0.13 7.88 -2.39 -0.02 0.11 16 4 C -0.52 -29.35 8.24 25.60 0.21 -29.14 16 5 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.58 11.32 21.44 0.24 -53.33 16 8 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 C -0.06 -2.79 4.74 -19.87 -0.09 -2.89 16 13 C -0.13 -5.05 8.70 22.27 0.19 -4.85 16 14 C -0.12 -3.81 9.70 22.27 0.22 -3.59 16 15 C -0.10 -3.02 5.13 -19.87 -0.10 -3.12 16 16 C -0.06 -1.29 5.27 29.85 0.16 -1.13 16 17 C 0.06 1.38 4.94 86.30 0.43 1.81 16 18 N -0.56 -10.64 5.02 -948.83 -4.76 -15.40 16 19 C 0.02 0.28 9.32 127.69 1.19 1.48 16 20 C 0.02 0.36 9.57 127.69 1.22 1.58 16 21 C -0.11 -3.52 9.70 22.27 0.22 -3.31 16 22 C -0.14 -5.59 9.67 22.27 0.22 -5.38 16 23 H 0.03 1.50 7.40 -2.39 -0.02 1.48 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.11 4.47 7.59 -2.91 -0.02 4.45 16 28 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.08 1.56 6.49 -2.39 -0.02 1.55 16 31 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 1.02 8.12 -2.38 -0.02 1.00 16 35 H 0.07 1.13 6.47 -2.39 -0.02 1.12 16 36 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 37 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 38 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.11 4.28 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -61.66 323.67 3.39 -58.27 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.98 Total: 13.51 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 4.90 Total: -49.15 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -4.52 Total: -68.74 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -61.66 3.39 -58.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.037 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds