Wall clock time and date at job start Mon Mar 30 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47008 * 2 1 4 4 C 1.50701 * 109.47172 * 119.99775 * 2 1 3 5 5 H 1.07998 * 119.99816 * 120.00479 * 4 2 1 6 6 C 1.37883 * 119.99874 * 300.00169 * 4 2 1 7 7 N 1.31516 * 119.99873 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99936 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.46449 * 90.00366 * 8 6 4 10 10 H 1.48493 * 109.47159 * 209.99874 * 8 6 4 11 11 H 1.48497 * 109.47228 * 330.00309 * 8 6 4 12 12 C 1.50698 * 109.47243 * 240.00008 * 2 1 3 13 13 C 1.38227 * 120.00136 * 119.99982 * 12 2 1 14 14 C 1.38244 * 120.00133 * 180.02562 * 13 12 2 15 15 C 1.38232 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.46912 * 90.00280 * 16 15 14 18 18 N 1.46901 * 109.46769 * 180.02562 * 17 16 15 19 19 C 1.46903 * 110.99790 * 169.99915 * 18 17 16 20 20 C 1.46901 * 110.99975 * 293.94862 * 18 17 16 21 21 C 1.38234 * 120.00312 * 0.25696 * 15 14 13 22 22 C 1.38239 * 119.99901 * 359.49432 * 21 15 14 23 23 H 1.09000 * 109.47333 * 300.00196 * 1 2 3 24 24 H 1.08997 * 109.47497 * 60.00207 * 1 2 3 25 25 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.00251 * 359.97438 * 13 12 2 28 28 H 1.07998 * 119.99981 * 179.97438 * 14 13 12 29 29 H 1.09002 * 109.47152 * 330.00052 * 16 15 14 30 30 H 1.09001 * 109.46980 * 210.00152 * 16 15 14 31 31 H 1.09001 * 109.47194 * 299.99742 * 17 16 15 32 32 H 1.08992 * 109.47399 * 59.99914 * 17 16 15 33 33 H 1.08998 * 109.47089 * 59.99855 * 19 18 17 34 34 H 1.09001 * 109.46977 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46995 * 299.99760 * 19 18 17 36 36 H 1.08999 * 109.46894 * 60.00348 * 20 18 17 37 37 H 1.09005 * 109.47342 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47121 * 300.00361 * 20 18 17 39 39 H 1.07998 * 120.00015 * 179.72855 * 21 15 14 40 40 H 1.08001 * 119.99843 * 180.23314 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4922 12 6 2.0323 -0.7104 -1.2304 13 6 2.8270 -0.0386 -2.1403 14 6 3.2874 -0.6902 -3.2693 15 6 2.9535 -2.0136 -3.4880 16 6 3.4548 -2.7237 -4.7191 17 6 4.8030 -3.3805 -4.4154 18 7 5.2920 -4.0722 -5.6156 19 6 6.6827 -4.5116 -5.4400 20 6 4.4220 -5.2040 -5.9621 21 6 2.1548 -2.6840 -2.5805 22 6 1.6986 -2.0340 -1.4490 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9040 -0.5272 4.4376 27 1 3.0876 0.9954 -1.9697 28 1 3.9080 -0.1652 -3.9804 29 1 3.5752 -2.0049 -5.5295 30 1 2.7367 -3.4884 -5.0152 31 1 5.5211 -2.6159 -4.1192 32 1 4.6826 -4.0993 -3.6050 33 1 6.7435 -5.1953 -4.5933 34 1 7.0198 -5.0202 -6.3432 35 1 7.3167 -3.6449 -5.2534 36 1 3.4127 -4.8407 -6.1550 37 1 4.8071 -5.6987 -6.8538 38 1 4.4010 -5.9129 -5.1343 39 1 1.8903 -3.7167 -2.7536 40 1 1.0778 -2.5589 -0.7381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:54 Heat of formation + Delta-G solvation = 17.900009 kcal Electronic energy + Delta-G solvation = -17507.728314 eV Core-core repulsion = 14900.939080 eV Total energy + Delta-G solvation = -2606.789233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11129 -37.57270 -34.87059 -32.41350 -30.96428 -30.29449 -27.89358 -27.66620 -25.09789 -24.44992 -22.20043 -21.84666 -20.76556 -19.42105 -16.62213 -16.06496 -15.62208 -15.37211 -14.92178 -14.63948 -14.29824 -14.15292 -13.27131 -12.93966 -12.82571 -12.64813 -12.55563 -12.36272 -12.18671 -12.00333 -11.87339 -11.58549 -11.22118 -11.04952 -10.87600 -10.69014 -10.41465 -10.10161 -9.92301 -9.35193 -9.13101 -8.58424 -8.51863 -8.28803 -7.74661 -6.08850 -4.08439 2.00378 2.04085 3.26119 3.36675 3.39082 3.83431 4.38942 4.42405 4.94129 4.98560 5.14203 5.23511 5.24319 5.29186 5.39761 5.49193 5.55010 5.55934 5.64028 5.69387 5.77881 5.81247 5.88982 6.11547 6.15005 6.30672 6.32344 6.41434 6.55431 6.72496 6.75884 6.87753 6.89012 6.92592 7.11700 7.13444 7.21417 7.60767 7.69042 7.75379 8.50332 8.95518 9.52409 11.04071 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.004326 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.664204 B = 6470.676582 C = 6682.779823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 H 0.034 0.966 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.266 1.266 12 C -0.027 4.027 13 C -0.129 4.129 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.067 4.067 17 C 0.059 3.941 18 N -0.550 5.550 19 C 0.024 3.976 20 C 0.020 3.980 21 C -0.120 4.120 22 C -0.105 4.105 23 H 0.040 0.960 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.264 0.736 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.109 0.891 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -4.639 -17.032 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.052 0.948 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.191 1.191 12 C -0.027 4.027 13 C -0.147 4.147 14 C -0.136 4.136 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.069 4.069 18 N -0.274 5.274 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.123 4.123 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.127 0.873 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.118 -4.318 -17.225 18.030 hybrid contribution -0.515 0.150 1.066 1.193 sum 2.603 -4.168 -16.160 16.891 Atomic orbital electron populations 1.22155 0.98424 1.00891 0.98573 1.18358 0.91920 0.96150 0.91831 0.94763 1.20963 1.32034 1.13515 0.88042 0.90632 1.25006 0.95727 0.96636 0.95785 1.69892 1.45596 1.40378 0.97921 0.86831 0.80568 0.83800 0.76885 1.20605 1.22539 1.19140 1.20210 0.93892 0.93906 0.94731 1.21083 0.99228 0.99865 0.94539 1.20856 1.00651 0.94270 0.97823 1.19554 1.00351 0.94526 0.96891 1.20457 0.95414 0.99124 0.95473 1.22183 0.96936 0.97698 0.90076 1.62028 1.02520 1.26482 1.36381 1.22374 0.89548 1.00137 1.00390 1.22443 0.98111 0.92230 1.00033 1.20928 0.98982 0.99002 0.94948 1.21063 1.00175 0.94700 0.96395 0.94116 0.95094 0.92759 0.92616 0.86739 0.87066 0.90786 0.91606 0.90563 0.94482 0.95645 0.91550 0.91316 0.90990 0.91674 0.95633 0.87267 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.49 37.16 0.32 -2.80 16 2 C 0.04 0.85 2.07 -92.92 -0.19 0.66 16 3 H 0.03 0.82 6.93 -51.93 -0.36 0.46 16 4 C -0.51 -14.15 8.82 -34.44 -0.30 -14.45 16 5 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 8 Si 0.89 21.88 24.37 -169.99 -4.14 17.73 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 12 C -0.03 -0.57 4.74 -104.63 -0.50 -1.07 16 13 C -0.13 -2.39 9.67 -39.58 -0.38 -2.77 16 14 C -0.12 -1.89 9.70 -39.58 -0.38 -2.28 16 15 C -0.11 -1.73 5.13 -104.62 -0.54 -2.27 16 16 C -0.07 -0.83 5.27 -27.88 -0.15 -0.98 16 17 C 0.06 0.71 4.94 -3.82 -0.02 0.69 16 18 N -0.55 -6.00 5.02 -251.26 -1.26 -7.27 16 19 C 0.02 0.22 9.57 60.07 0.57 0.80 16 20 C 0.02 0.19 9.32 60.07 0.56 0.75 16 21 C -0.12 -2.00 9.70 -39.58 -0.38 -2.39 16 22 C -0.11 -2.06 8.71 -39.58 -0.34 -2.40 16 23 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.14 7.39 -51.93 -0.38 0.75 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.11 1.98 7.95 -52.49 -0.42 1.56 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 31 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 37 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.12 2.45 7.58 -52.49 -0.40 2.05 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -29.94 316.85 -8.33 -38.27 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.63 Total: -0.27 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -1.84 Total: -26.59 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.49 Total: -33.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.94 -8.33 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.167 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds