Wall clock time and date at job start Mon Mar 30 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47008 * 2 1 4 4 C 1.50701 * 109.47172 * 119.99775 * 2 1 3 5 5 H 1.07998 * 119.99816 * 120.00479 * 4 2 1 6 6 C 1.37883 * 119.99874 * 300.00169 * 4 2 1 7 7 N 1.31516 * 119.99873 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99936 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.46449 * 90.00366 * 8 6 4 10 10 H 1.48493 * 109.47159 * 209.99874 * 8 6 4 11 11 H 1.48497 * 109.47228 * 330.00309 * 8 6 4 12 12 C 1.50698 * 109.47243 * 240.00008 * 2 1 3 13 13 C 1.38227 * 120.00136 * 119.99982 * 12 2 1 14 14 C 1.38244 * 120.00133 * 180.02562 * 13 12 2 15 15 C 1.38232 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.46912 * 90.00280 * 16 15 14 18 18 N 1.46901 * 109.46769 * 180.02562 * 17 16 15 19 19 C 1.46903 * 110.99790 * 169.99915 * 18 17 16 20 20 C 1.46901 * 110.99975 * 293.94862 * 18 17 16 21 21 C 1.38234 * 120.00312 * 0.25696 * 15 14 13 22 22 C 1.38239 * 119.99901 * 359.49432 * 21 15 14 23 23 H 1.09000 * 109.47333 * 300.00196 * 1 2 3 24 24 H 1.08997 * 109.47497 * 60.00207 * 1 2 3 25 25 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.00251 * 359.97438 * 13 12 2 28 28 H 1.07998 * 119.99981 * 179.97438 * 14 13 12 29 29 H 1.09002 * 109.47152 * 330.00052 * 16 15 14 30 30 H 1.09001 * 109.46980 * 210.00152 * 16 15 14 31 31 H 1.09001 * 109.47194 * 299.99742 * 17 16 15 32 32 H 1.08992 * 109.47399 * 59.99914 * 17 16 15 33 33 H 1.08998 * 109.47089 * 59.99855 * 19 18 17 34 34 H 1.09001 * 109.46977 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46995 * 299.99760 * 19 18 17 36 36 H 1.08999 * 109.46894 * 60.00348 * 20 18 17 37 37 H 1.09005 * 109.47342 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47121 * 300.00361 * 20 18 17 39 39 H 1.07998 * 120.00015 * 179.72855 * 21 15 14 40 40 H 1.08001 * 119.99843 * 180.23314 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4922 12 6 2.0323 -0.7104 -1.2304 13 6 2.8270 -0.0386 -2.1403 14 6 3.2874 -0.6902 -3.2693 15 6 2.9535 -2.0136 -3.4880 16 6 3.4548 -2.7237 -4.7191 17 6 4.8030 -3.3805 -4.4154 18 7 5.2920 -4.0722 -5.6156 19 6 6.6827 -4.5116 -5.4400 20 6 4.4220 -5.2040 -5.9621 21 6 2.1548 -2.6840 -2.5805 22 6 1.6986 -2.0340 -1.4490 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9040 -0.5272 4.4376 27 1 3.0876 0.9954 -1.9697 28 1 3.9080 -0.1652 -3.9804 29 1 3.5752 -2.0049 -5.5295 30 1 2.7367 -3.4884 -5.0152 31 1 5.5211 -2.6159 -4.1192 32 1 4.6826 -4.0993 -3.6050 33 1 6.7435 -5.1953 -4.5933 34 1 7.0198 -5.0202 -6.3432 35 1 7.3167 -3.6449 -5.2534 36 1 3.4127 -4.8407 -6.1550 37 1 4.8071 -5.6987 -6.8538 38 1 4.4010 -5.9129 -5.1343 39 1 1.8903 -3.7167 -2.7536 40 1 1.0778 -2.5589 -0.7381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:53 Heat of formation + Delta-G solvation = -0.064760 kcal Electronic energy + Delta-G solvation = -17508.507325 eV Core-core repulsion = 14900.939080 eV Total energy + Delta-G solvation = -2607.568244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46110 -38.51717 -36.52000 -34.16493 -32.55979 -31.67510 -29.10510 -28.44625 -27.09701 -25.61498 -23.60266 -23.17183 -21.86920 -20.94778 -18.69790 -17.39624 -16.80410 -16.62834 -16.09210 -15.85472 -15.66139 -15.39611 -14.82736 -14.50172 -14.23863 -14.15516 -13.86785 -13.76196 -13.29310 -13.17052 -12.92289 -12.80605 -12.58197 -12.40835 -12.31149 -12.09695 -11.84995 -11.66484 -11.55925 -11.17383 -11.12109 -10.73528 -9.67487 -9.35460 -9.18158 -8.29968 -6.33971 0.61189 0.64978 1.30635 1.36053 1.46962 2.32116 2.90627 3.05287 3.12941 3.95629 4.06486 4.13648 4.22479 4.27543 4.28970 4.36419 4.51468 4.56474 4.66828 4.68629 4.71951 4.74633 4.76785 4.81207 4.90175 5.00788 5.02075 5.07712 5.11529 5.16142 5.30203 5.36520 5.50206 5.61842 5.71116 5.80848 6.04817 6.06448 6.09745 6.24933 6.36184 6.72222 7.30512 8.86765 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.004326 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.664204 B = 6470.676582 C = 6682.779823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 H 0.032 0.968 4 C -0.508 4.508 5 H 0.030 0.970 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.299 1.299 11 H -0.246 1.246 12 C -0.060 4.060 13 C -0.138 4.138 14 C -0.113 4.113 15 C -0.101 4.101 16 C -0.059 4.059 17 C 0.062 3.938 18 N -0.557 5.557 19 C 0.022 3.978 20 C 0.018 3.982 21 C -0.120 4.120 22 C -0.124 4.124 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.266 0.734 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.131 0.869 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -3.951 -19.873 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.050 0.950 4 C -0.546 4.546 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.227 1.227 11 H -0.170 1.170 12 C -0.060 4.060 13 C -0.156 4.156 14 C -0.131 4.131 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.065 4.065 18 N -0.281 5.281 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.143 4.143 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.149 0.851 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.871 -3.636 -20.097 20.624 hybrid contribution -0.327 -0.197 1.846 1.885 sum 2.544 -3.832 -18.251 18.822 Atomic orbital electron populations 1.22070 0.96874 1.01178 0.99573 1.18257 0.93246 0.95537 0.91159 0.94983 1.21204 1.30853 1.12218 0.90304 0.95145 1.25884 0.97322 1.00050 0.95296 1.70048 1.47795 1.42644 0.98604 0.85798 0.79060 0.79966 0.77292 1.19213 1.22704 1.16984 1.20093 0.96347 0.94693 0.94913 1.21245 0.98881 1.00487 0.94987 1.21195 1.00020 0.94572 0.97298 1.19915 0.98615 0.94396 0.97246 1.20438 0.95680 0.99482 0.94063 1.22073 0.96686 0.97429 0.90361 1.62050 1.03375 1.27290 1.35379 1.22438 0.88822 1.00292 1.01071 1.22515 0.98199 0.91787 1.00518 1.21155 0.98655 0.99990 0.94043 1.21025 1.01129 0.94627 0.97475 0.94831 0.92099 0.92982 0.92538 0.85852 0.83948 0.89518 0.90323 0.91076 0.95820 0.96023 0.89962 0.91167 0.90578 0.90184 0.95991 0.85108 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.93 8.49 71.98 0.61 -5.32 16 2 C 0.04 1.74 2.07 -12.29 -0.03 1.71 16 3 H 0.03 1.51 6.93 -2.39 -0.02 1.50 16 4 C -0.51 -29.36 8.82 25.60 0.23 -29.14 16 5 H 0.03 1.97 7.84 -2.91 -0.02 1.95 16 6 C 0.01 0.66 5.45 84.66 0.46 1.12 16 7 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 8 Si 0.95 45.25 24.37 68.60 1.67 46.92 16 9 H -0.27 -12.01 6.87 99.48 0.68 -11.33 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.25 -10.79 6.53 99.48 0.65 -10.14 16 12 C -0.06 -2.53 4.74 -19.87 -0.09 -2.62 16 13 C -0.14 -4.93 9.67 22.27 0.22 -4.71 16 14 C -0.11 -3.33 9.70 22.27 0.22 -3.11 16 15 C -0.10 -2.86 5.13 -19.87 -0.10 -2.96 16 16 C -0.06 -1.27 5.27 29.85 0.16 -1.11 16 17 C 0.06 1.37 4.94 86.30 0.43 1.80 16 18 N -0.56 -10.70 5.02 -948.84 -4.76 -15.46 16 19 C 0.02 0.36 9.57 127.69 1.22 1.58 16 20 C 0.02 0.28 9.32 127.69 1.19 1.48 16 21 C -0.12 -3.86 9.70 22.27 0.22 -3.65 16 22 C -0.12 -4.92 8.71 22.27 0.19 -4.73 16 23 H 0.03 1.45 3.27 -2.39 -0.01 1.44 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 2.18 7.39 -2.39 -0.02 2.16 16 26 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.12 4.07 7.95 -2.91 -0.02 4.05 16 28 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 30 H 0.08 1.53 6.50 -2.39 -0.02 1.51 16 31 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 32 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 33 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 36 H 0.08 1.15 6.47 -2.39 -0.02 1.13 16 37 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16 38 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.10 4.37 7.58 -2.91 -0.02 4.35 16 Total: -1.00 -66.27 316.85 3.03 -63.24 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.91 Total: 14.78 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 4.91 Total: -49.67 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -4.46 Total: -75.28 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -66.27 3.03 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.176 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds