Wall clock time and date at job start Mon Mar 30 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.50694 * 109.47184 * 63.31417 * 3 2 1 5 5 H 1.08005 * 119.99460 * 237.40561 * 4 3 2 6 6 C 1.37873 * 120.00339 * 57.40518 * 4 3 2 7 7 N 1.31512 * 119.99672 * 6.41879 * 6 4 3 8 8 Si 1.86799 * 120.00056 * 186.41845 * 6 4 3 9 9 H 1.48499 * 109.47387 * 84.98213 * 8 6 4 10 10 H 1.48504 * 109.47101 * 204.98097 * 8 6 4 11 11 H 1.48497 * 109.47303 * 324.97825 * 8 6 4 12 12 C 1.53001 * 109.46865 * 183.31417 * 3 2 1 13 13 C 1.53009 * 109.46833 * 179.97438 * 12 3 2 14 14 N 1.46900 * 109.46858 * 303.31155 * 3 2 1 15 15 C 1.46902 * 111.00060 * 300.00102 * 14 3 2 16 16 C 1.50700 * 109.47118 * 180.02562 * 15 14 3 17 17 C 1.38240 * 119.99902 * 89.99678 * 16 15 14 18 18 C 1.38240 * 119.99751 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.38236 * 120.00139 * 0.27430 * 19 18 17 21 21 C 1.38234 * 120.00064 * 269.97973 * 16 15 14 22 22 H 1.09001 * 109.47168 * 299.99972 * 1 2 3 23 23 H 1.08998 * 109.47538 * 60.00027 * 1 2 3 24 24 H 1.09007 * 109.47490 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46752 * 239.99690 * 2 1 3 26 26 H 1.08999 * 109.47083 * 120.00241 * 2 1 3 27 27 H 0.97006 * 120.00174 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47473 * 299.99636 * 12 3 2 29 29 H 1.09006 * 109.47129 * 59.99999 * 12 3 2 30 30 H 1.08996 * 109.46925 * 60.00353 * 13 12 3 31 31 H 1.09004 * 109.46421 * 179.97438 * 13 12 3 32 32 H 1.08999 * 109.47065 * 300.00218 * 13 12 3 33 33 H 1.00900 * 111.00155 * 63.95527 * 14 3 2 34 34 H 1.08993 * 109.47274 * 60.00175 * 15 14 3 35 35 H 1.09000 * 109.47242 * 299.99846 * 15 14 3 36 36 H 1.07991 * 120.00115 * 359.97438 * 17 16 15 37 37 H 1.07997 * 119.99829 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.99750 * 180.02562 * 19 18 17 39 39 H 1.07995 * 119.99802 * 179.72507 * 20 19 18 40 40 H 1.07997 * 120.00085 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6058 2.1288 1.2694 5 1 1.0159 3.0321 1.2202 6 6 1.9617 1.6035 2.4935 7 7 2.7832 0.5785 2.5554 8 14 1.2769 2.3479 4.0640 9 1 -0.0525 1.7537 4.3548 10 1 2.2025 2.0653 5.1903 11 1 1.1365 3.8166 3.8954 12 6 3.5677 1.4432 -0.0834 13 6 4.0776 2.8859 -0.0840 14 7 1.4860 2.1576 -1.1574 15 6 1.8894 1.5154 -2.4155 16 6 1.3042 2.2755 -3.5778 17 6 2.0125 3.3154 -4.1505 18 6 1.4758 4.0122 -5.2170 19 6 0.2313 3.6689 -5.7111 20 6 -0.4792 2.6324 -5.1351 21 6 0.0594 1.9326 -4.0714 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0333 0.2086 3.4166 28 1 3.9788 0.9126 0.7754 29 1 3.8817 0.9468 -1.0016 30 1 3.7637 3.3826 0.8339 31 1 5.1661 2.8863 -0.1430 32 1 3.6666 3.4161 -0.9430 33 1 0.4815 2.2270 -1.0928 34 1 1.5251 0.4883 -2.4323 35 1 2.9768 1.5165 -2.4917 36 1 2.9849 3.5833 -3.7648 37 1 2.0293 4.8244 -5.6647 38 1 -0.1877 4.2131 -6.5445 39 1 -1.4534 2.3671 -5.5183 40 1 -0.4940 1.1203 -3.6239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261123086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:11 Heat of formation + Delta-G solvation = 16.657206 kcal Electronic energy + Delta-G solvation = -18587.342831 eV Core-core repulsion = 15980.499705 eV Total energy + Delta-G solvation = -2606.843125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.08847 -37.40246 -33.17742 -31.34075 -30.85344 -30.59932 -29.17672 -26.32512 -24.18745 -24.04801 -22.29471 -20.86215 -20.63474 -18.40766 -16.70740 -16.01970 -15.07794 -15.03664 -14.68199 -14.11282 -13.73578 -13.25445 -13.17339 -13.03566 -12.61634 -12.22986 -11.90693 -11.78590 -11.61667 -11.42811 -11.01090 -10.89815 -10.72025 -10.59537 -10.47857 -10.24500 -9.86484 -9.60306 -9.51430 -9.27245 -8.72516 -8.67752 -8.44070 -8.25874 -7.11480 -5.96175 -4.00440 1.62102 1.65272 3.31138 3.38358 3.41809 4.04244 4.43520 5.10974 5.12233 5.21529 5.31317 5.36708 5.61924 5.75668 5.80326 6.04306 6.17873 6.18914 6.29475 6.35246 6.41385 6.48976 6.63547 6.69258 6.71239 6.72108 6.85012 6.90647 7.01134 7.18375 7.25731 7.29964 7.35492 7.52301 7.61427 7.76531 7.88096 7.91821 8.40750 8.54800 8.72460 9.04758 9.63442 11.06237 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.006164 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.898674 B = 4541.633668 C = 4734.785008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C 0.243 3.757 4 C -0.485 4.485 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.104 4.104 13 C -0.121 4.121 14 N -0.670 5.670 15 C 0.088 3.912 16 C -0.063 4.063 17 C -0.101 4.101 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.119 4.119 22 H 0.062 0.938 23 H 0.028 0.972 24 H 0.025 0.975 25 H 0.017 0.983 26 H 0.094 0.906 27 H 0.258 0.742 28 H 0.092 0.908 29 H 0.010 0.990 30 H 0.057 0.943 31 H 0.013 0.987 32 H 0.042 0.958 33 H 0.328 0.672 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 1.974 -11.489 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.186 4.186 3 C 0.154 3.846 4 C -0.523 4.523 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.201 1.201 12 C -0.142 4.142 13 C -0.178 4.178 14 N -0.300 5.300 15 C -0.041 4.041 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.142 4.142 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.146 0.854 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.182 2.327 -11.339 11.779 hybrid contribution -0.982 -0.475 0.876 1.399 sum -3.164 1.852 -10.463 11.087 Atomic orbital electron populations 1.21640 0.98228 0.98513 1.00795 1.22142 0.94072 1.01510 1.00908 1.18585 0.91139 0.87902 0.86995 1.20909 1.32494 1.09670 0.89272 0.92318 1.24802 0.95001 0.95236 0.98624 1.69801 1.33585 1.24644 1.24660 0.86659 0.78782 0.79613 0.83227 1.20873 1.21497 1.20068 1.21564 0.97337 0.95899 0.99405 1.21462 0.96009 0.98555 1.01790 1.60898 1.15312 1.53494 1.00335 1.20966 1.00142 0.94398 0.88611 1.20140 0.94154 0.95923 0.96153 1.21074 1.00252 0.95128 0.95503 1.21110 0.96004 0.99857 0.97268 1.21029 0.95452 0.98217 1.00464 1.21050 0.99579 0.96586 0.96979 1.21087 0.95558 1.00181 0.96896 0.91896 0.95265 0.95602 0.96448 0.88721 0.93128 0.89007 0.97089 0.92410 0.96814 0.93880 0.85387 0.95076 0.90621 0.86063 0.86588 0.86784 0.86677 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.29 37.16 0.35 -2.39 16 2 C -0.15 -3.30 4.30 -26.73 -0.12 -3.42 16 3 C 0.24 5.55 0.14 -132.76 -0.02 5.53 16 4 C -0.48 -12.31 5.85 -34.44 -0.20 -12.51 16 5 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 6 C 0.06 1.66 5.11 -17.82 -0.09 1.57 16 7 N -0.89 -23.52 9.38 55.43 0.52 -23.00 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C -0.10 -2.39 4.42 -26.73 -0.12 -2.51 16 13 C -0.12 -2.64 9.51 37.16 0.35 -2.29 16 14 N -0.67 -13.65 5.13 -102.40 -0.53 -14.18 16 15 C 0.09 1.58 5.02 -4.97 -0.02 1.55 16 16 C -0.06 -1.01 5.39 -104.62 -0.56 -1.58 16 17 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 18 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 19 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 20 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 21 C -0.12 -1.74 9.70 -39.58 -0.38 -2.12 16 22 H 0.06 1.38 7.32 -51.93 -0.38 1.00 16 23 H 0.03 0.54 6.72 -51.93 -0.35 0.19 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.37 6.59 -51.93 -0.34 0.03 16 26 H 0.09 2.41 6.03 -51.93 -0.31 2.09 16 27 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 29 H 0.01 0.23 6.40 -51.93 -0.33 -0.10 16 30 H 0.06 1.37 7.22 -51.93 -0.37 1.00 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.90 7.60 -51.93 -0.39 0.51 16 33 H 0.33 6.73 6.96 -39.29 -0.27 6.45 16 34 H 0.03 0.57 6.32 -51.93 -0.33 0.24 16 35 H 0.08 1.41 6.25 -51.93 -0.32 1.08 16 36 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -25.82 310.12 -8.98 -34.80 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.23 Total: 8.16 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.40 Total: -26.14 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.01 Total: -37.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.82 -8.98 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.461 kcal (2) G-P(sol) polarization free energy of solvation -25.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds