Wall clock time and date at job start Mon Mar 30 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.50694 * 109.47184 * 63.31417 * 3 2 1 5 5 H 1.08005 * 119.99460 * 237.40561 * 4 3 2 6 6 C 1.37873 * 120.00339 * 57.40518 * 4 3 2 7 7 N 1.31512 * 119.99672 * 6.41879 * 6 4 3 8 8 Si 1.86799 * 120.00056 * 186.41845 * 6 4 3 9 9 H 1.48499 * 109.47387 * 84.98213 * 8 6 4 10 10 H 1.48504 * 109.47101 * 204.98097 * 8 6 4 11 11 H 1.48497 * 109.47303 * 324.97825 * 8 6 4 12 12 C 1.53001 * 109.46865 * 183.31417 * 3 2 1 13 13 C 1.53009 * 109.46833 * 179.97438 * 12 3 2 14 14 N 1.46900 * 109.46858 * 303.31155 * 3 2 1 15 15 C 1.46902 * 111.00060 * 300.00102 * 14 3 2 16 16 C 1.50700 * 109.47118 * 180.02562 * 15 14 3 17 17 C 1.38240 * 119.99902 * 89.99678 * 16 15 14 18 18 C 1.38240 * 119.99751 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.38236 * 120.00139 * 0.27430 * 19 18 17 21 21 C 1.38234 * 120.00064 * 269.97973 * 16 15 14 22 22 H 1.09001 * 109.47168 * 299.99972 * 1 2 3 23 23 H 1.08998 * 109.47538 * 60.00027 * 1 2 3 24 24 H 1.09007 * 109.47490 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46752 * 239.99690 * 2 1 3 26 26 H 1.08999 * 109.47083 * 120.00241 * 2 1 3 27 27 H 0.97006 * 120.00174 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47473 * 299.99636 * 12 3 2 29 29 H 1.09006 * 109.47129 * 59.99999 * 12 3 2 30 30 H 1.08996 * 109.46925 * 60.00353 * 13 12 3 31 31 H 1.09004 * 109.46421 * 179.97438 * 13 12 3 32 32 H 1.08999 * 109.47065 * 300.00218 * 13 12 3 33 33 H 1.00900 * 111.00155 * 63.95527 * 14 3 2 34 34 H 1.08993 * 109.47274 * 60.00175 * 15 14 3 35 35 H 1.09000 * 109.47242 * 299.99846 * 15 14 3 36 36 H 1.07991 * 120.00115 * 359.97438 * 17 16 15 37 37 H 1.07997 * 119.99829 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.99750 * 180.02562 * 19 18 17 39 39 H 1.07995 * 119.99802 * 179.72507 * 20 19 18 40 40 H 1.07997 * 120.00085 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6058 2.1288 1.2694 5 1 1.0159 3.0321 1.2202 6 6 1.9617 1.6035 2.4935 7 7 2.7832 0.5785 2.5554 8 14 1.2769 2.3479 4.0640 9 1 -0.0525 1.7537 4.3548 10 1 2.2025 2.0653 5.1903 11 1 1.1365 3.8166 3.8954 12 6 3.5677 1.4432 -0.0834 13 6 4.0776 2.8859 -0.0840 14 7 1.4860 2.1576 -1.1574 15 6 1.8894 1.5154 -2.4155 16 6 1.3042 2.2755 -3.5778 17 6 2.0125 3.3154 -4.1505 18 6 1.4758 4.0122 -5.2170 19 6 0.2313 3.6689 -5.7111 20 6 -0.4792 2.6324 -5.1351 21 6 0.0594 1.9326 -4.0714 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0333 0.2086 3.4166 28 1 3.9788 0.9126 0.7754 29 1 3.8817 0.9468 -1.0016 30 1 3.7637 3.3826 0.8339 31 1 5.1661 2.8863 -0.1430 32 1 3.6666 3.4161 -0.9430 33 1 0.4815 2.2270 -1.0928 34 1 1.5251 0.4883 -2.4323 35 1 2.9768 1.5165 -2.4917 36 1 2.9849 3.5833 -3.7648 37 1 2.0293 4.8244 -5.6647 38 1 -0.1877 4.2131 -6.5445 39 1 -1.4534 2.3671 -5.5183 40 1 -0.4940 1.1203 -3.6239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:11 Heat of formation + Delta-G solvation = 4.546389 kcal Electronic energy + Delta-G solvation = -18587.867995 eV Core-core repulsion = 15980.499705 eV Total energy + Delta-G solvation = -2607.368290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29289 -39.00867 -34.80623 -32.98679 -32.61525 -31.66418 -30.65752 -28.10576 -25.93222 -25.62114 -23.34003 -22.43703 -22.07093 -20.20227 -18.17814 -17.42615 -16.88483 -16.41547 -16.01593 -15.52781 -15.36844 -14.88413 -14.76638 -14.15656 -14.02470 -13.74145 -13.57066 -13.30592 -13.23355 -12.95716 -12.75266 -12.65750 -12.45252 -12.06136 -12.04830 -11.79093 -11.55998 -11.39986 -11.30098 -11.07111 -10.60647 -10.23998 -9.72117 -9.56729 -8.76222 -7.94430 -6.03163 0.55082 0.60534 1.43397 1.47029 1.53564 2.49268 2.97427 3.30589 3.87396 4.04001 4.16010 4.26663 4.37043 4.42847 4.53262 4.60754 4.73367 4.73895 4.78287 4.89457 4.91543 4.96152 5.05352 5.16269 5.23027 5.26863 5.37007 5.51883 5.56808 5.65347 5.69327 5.70052 5.75782 5.85088 5.91140 5.96180 6.02674 6.22706 6.52182 6.74415 6.95183 7.12873 7.63466 9.05607 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.006164 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.898674 B = 4541.633668 C = 4734.785008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 C 0.243 3.757 4 C -0.489 4.489 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.277 1.277 12 C -0.101 4.101 13 C -0.109 4.109 14 N -0.670 5.670 15 C 0.098 3.902 16 C -0.084 4.084 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.130 4.130 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.256 0.744 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.327 0.673 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 2.793 -13.344 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.182 4.182 3 C 0.154 3.846 4 C -0.528 4.528 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.544 5.544 8 Si 0.764 3.236 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.202 1.202 12 C -0.140 4.140 13 C -0.167 4.167 14 N -0.300 5.300 15 C -0.031 4.031 16 C -0.085 4.085 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.149 4.149 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.219 3.150 -13.203 13.950 hybrid contribution -0.665 -0.705 1.359 1.670 sum -3.885 2.445 -11.844 12.702 Atomic orbital electron populations 1.21525 0.96615 0.99537 1.00591 1.22031 0.95511 1.01011 0.99659 1.18453 0.91009 0.88029 0.87143 1.21042 1.31973 1.09156 0.90584 0.93714 1.25309 0.95367 0.95701 1.00708 1.69930 1.34296 1.25427 1.24746 0.85917 0.78183 0.78795 0.80719 1.20632 1.21623 1.20211 1.21475 0.97623 0.96341 0.98539 1.21328 0.97122 0.97506 1.00722 1.60794 1.15112 1.53506 1.00621 1.20840 0.99575 0.94366 0.88333 1.19994 0.95293 0.96955 0.96245 1.21170 1.00360 0.95492 0.96562 1.21416 0.96531 1.00002 0.96445 1.21448 0.94884 0.97697 1.00716 1.21387 1.00619 0.96158 0.96094 1.21211 0.95163 1.00745 0.97734 0.93857 0.93575 0.93973 0.95769 0.91741 0.93480 0.91811 0.96100 0.94783 0.95066 0.93203 0.85469 0.95543 0.91601 0.86499 0.84201 0.83658 0.84083 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.29 71.98 0.67 -4.36 16 2 C -0.14 -6.44 4.30 30.59 0.13 -6.31 16 3 C 0.24 11.20 0.14 2.78 0.00 11.20 16 4 C -0.49 -25.12 5.85 25.60 0.15 -24.97 16 5 H 0.04 2.39 7.82 -2.91 -0.02 2.36 16 6 C 0.03 1.47 5.11 84.65 0.43 1.90 16 7 N -0.90 -48.86 9.38 21.45 0.20 -48.65 16 8 Si 0.94 42.88 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 C -0.10 -4.72 4.42 30.60 0.14 -4.59 16 13 C -0.11 -4.77 9.51 71.99 0.68 -4.09 16 14 N -0.67 -27.16 5.13 -477.89 -2.45 -29.61 16 15 C 0.10 3.47 5.02 85.56 0.43 3.90 16 16 C -0.08 -2.61 5.39 -19.86 -0.11 -2.72 16 17 C -0.12 -3.36 9.70 22.27 0.22 -3.14 16 18 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 19 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 20 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 21 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 22 H 0.04 1.89 7.32 -2.39 -0.02 1.87 16 23 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.02 1.03 6.59 -2.39 -0.02 1.01 16 26 H 0.06 3.33 6.03 -2.39 -0.01 3.32 16 27 H 0.26 13.49 8.31 -92.70 -0.77 12.72 16 28 H 0.06 3.35 6.04 -2.39 -0.01 3.34 16 29 H 0.02 0.90 6.40 -2.38 -0.02 0.89 16 30 H 0.03 1.61 7.22 -2.39 -0.02 1.60 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 2.07 7.60 -2.39 -0.02 2.05 16 33 H 0.33 13.28 6.96 -89.69 -0.62 12.66 16 34 H 0.03 0.96 6.32 -2.39 -0.02 0.94 16 35 H 0.07 2.43 6.25 -2.39 -0.01 2.42 16 36 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -55.04 310.12 3.79 -51.25 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.39 Total: 26.45 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 3.63 Total: -44.35 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.25 Total: -78.26 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -55.04 3.79 -51.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal (2) G-P(sol) polarization free energy of solvation -55.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds