Wall clock time and date at job start Mon Mar 30 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46665 * 119.99591 * 2 1 3 5 5 C 1.53006 * 109.46755 * 174.99729 * 4 2 1 6 6 H 1.09001 * 109.47201 * 55.00580 * 5 4 2 7 7 N 1.46896 * 109.47269 * 295.00083 * 5 4 2 8 8 C 1.50705 * 109.46838 * 175.00137 * 5 4 2 9 9 C 1.38240 * 119.99622 * 259.99828 * 8 5 4 10 10 C 1.38239 * 119.99368 * 179.97438 * 9 8 5 11 11 C 1.38231 * 120.00353 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00100 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47259 * 89.99885 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72713 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.38233 * 119.99938 * 0.27397 * 11 10 9 22 22 C 1.38230 * 120.00087 * 79.98304 * 8 5 4 23 23 H 1.09003 * 109.47229 * 300.00614 * 1 2 3 24 24 H 1.09003 * 109.47333 * 60.00210 * 1 2 3 25 25 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47229 * 239.99386 * 2 1 3 27 27 H 1.08995 * 109.47825 * 59.99718 * 3 2 1 28 28 H 1.09005 * 109.47145 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46900 * 299.99599 * 3 2 1 30 30 H 1.09001 * 109.47425 * 55.00493 * 4 2 1 31 31 H 1.08997 * 109.47673 * 294.99768 * 4 2 1 32 32 H 1.00902 * 111.00346 * 299.99788 * 7 5 4 33 33 H 1.00900 * 111.00209 * 63.95414 * 7 5 4 34 34 H 1.07994 * 120.00385 * 359.97438 * 9 8 5 35 35 H 1.08000 * 119.99283 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47545 * 330.00225 * 12 11 10 37 37 H 1.08998 * 109.47669 * 210.00168 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.00309 * 179.73170 * 21 11 10 40 40 H 1.08005 * 119.99944 * 359.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1880 6 1 3.9954 0.1611 1.0528 7 7 3.9489 -1.6896 0.0597 8 6 4.0772 -1.4302 2.4724 9 6 4.6034 -0.6125 3.4549 10 6 5.0730 -1.1621 4.6332 11 6 5.0158 -2.5292 4.8293 12 6 5.5282 -3.1284 6.1135 13 6 4.4086 -3.1911 7.1204 14 1 3.4244 -2.8333 6.8565 15 6 4.6392 -3.7110 8.3764 16 7 5.8362 -4.1525 8.6956 17 14 3.2513 -3.7894 9.6242 18 1 2.1489 -4.6264 9.0864 19 1 3.7545 -4.3863 10.8874 20 1 2.7472 -2.4182 9.8905 21 6 4.4943 -3.3474 3.8447 22 6 4.0207 -2.7975 2.6681 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.5617 -2.6158 0.1618 33 1 3.6730 -1.2772 -0.8189 34 1 4.6477 0.4557 3.3020 35 1 5.4837 -0.5231 5.4010 36 1 6.3356 -2.5103 6.5062 37 1 5.9012 -4.1344 5.9218 38 1 5.9985 -4.5186 9.5791 39 1 4.4536 -4.4160 3.9960 40 1 3.6089 -3.4363 1.9007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:04 Heat of formation + Delta-G solvation = -10.732415 kcal Electronic energy + Delta-G solvation = -17477.134327 eV Core-core repulsion = 14869.103499 eV Total energy + Delta-G solvation = -2608.030829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24877 -37.33193 -34.24021 -32.97496 -30.88022 -30.17417 -28.11957 -27.40702 -26.63355 -23.82927 -22.15152 -21.68922 -20.08347 -19.50979 -16.58577 -16.26608 -15.54908 -15.20926 -14.73615 -14.34040 -14.28078 -13.99859 -13.93501 -13.03357 -12.77111 -12.70041 -12.48818 -12.38453 -12.02860 -11.75765 -11.68974 -11.24333 -11.08224 -10.98481 -10.82116 -10.70791 -10.59990 -10.39068 -10.12690 -9.51895 -9.41503 -8.68642 -8.41004 -8.20570 -7.63234 -6.02787 -4.06724 2.11957 2.13347 3.32328 3.36362 3.39563 4.35800 4.50128 4.57660 4.67118 4.72775 4.80818 5.17035 5.26349 5.31309 5.35348 5.42707 5.48456 5.55684 5.61398 5.66056 5.73575 5.79646 5.87025 5.99048 6.05061 6.13785 6.18807 6.32964 6.36646 6.69030 6.77555 7.08173 7.23338 7.23744 7.27475 7.44893 7.53500 7.79748 7.89971 7.93069 8.34114 8.98360 9.56870 11.07058 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.004395 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.103847 B = 6369.604447 C = 6776.706015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.146 4.146 5 C 0.138 3.862 6 H 0.085 0.915 7 N -0.839 5.839 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.034 4.034 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.124 4.124 22 C -0.108 4.108 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.335 0.665 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 7.776 -17.116 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.185 4.185 5 C 0.026 3.974 6 H 0.103 0.897 7 N -0.369 5.369 8 C -0.107 4.107 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.034 4.034 12 C 0.010 3.990 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.143 4.143 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.571 7.811 -16.732 19.600 hybrid contribution -1.817 -0.168 0.645 1.935 sum -8.388 7.643 -16.086 19.686 Atomic orbital electron populations 1.21833 0.95265 1.01660 1.01673 1.21138 0.95775 0.96514 0.98230 1.21911 1.01344 0.95850 1.01674 1.22486 0.97060 1.00882 0.98100 1.20291 0.91949 0.96397 0.88724 0.89741 1.58962 1.67737 1.06087 1.04144 1.19389 1.02445 0.93783 0.95067 1.20817 1.00008 0.98489 0.94206 1.21036 1.01122 0.95286 0.96714 1.20667 0.93385 0.93139 0.96199 1.18354 0.96465 0.96185 0.87983 1.21025 0.96000 1.41058 0.96874 0.92585 1.25009 0.95687 0.95310 0.98312 1.69950 1.20808 1.41465 1.21140 0.86602 0.82244 0.78407 0.80462 1.20198 1.21212 1.20173 1.21048 0.99943 0.99844 0.93419 1.20685 1.00834 0.94125 0.97032 0.92587 0.92887 0.92816 0.91673 0.92525 0.92265 0.92950 0.91897 0.91144 0.84758 0.85137 0.87359 0.86554 0.95391 0.95380 0.92795 0.86639 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.10 -0.84 2.79 -90.62 -0.25 -1.10 16 3 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 4 C -0.15 -1.57 4.31 -26.73 -0.12 -1.69 16 5 C 0.14 1.67 2.91 -68.86 -0.20 1.47 16 6 H 0.08 1.01 6.21 -51.93 -0.32 0.69 16 7 N -0.84 -9.24 9.01 -5.65 -0.05 -9.29 16 8 C -0.11 -1.69 4.96 -104.62 -0.52 -2.21 16 9 C -0.12 -1.99 9.67 -39.58 -0.38 -2.37 16 10 C -0.12 -2.48 9.70 -39.58 -0.38 -2.86 16 11 C -0.03 -0.75 5.07 -104.63 -0.53 -1.28 16 12 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 13 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.49 9.70 -39.58 -0.38 -2.88 16 22 C -0.11 -1.83 9.29 -39.58 -0.37 -2.20 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.52 6.65 -51.93 -0.35 0.17 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.34 3.56 7.35 -39.29 -0.29 3.27 16 33 H 0.34 2.97 7.44 -39.29 -0.29 2.68 16 34 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.11 1.51 6.67 -52.48 -0.35 1.16 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -29.90 323.49 -9.02 -38.92 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.54 Total: 3.83 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -3.02 Total: -29.07 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.69 Total: -35.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.90 -9.02 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.192 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds