Wall clock time and date at job start Mon Mar 30 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46665 * 119.99591 * 2 1 3 5 5 C 1.53006 * 109.46755 * 174.99729 * 4 2 1 6 6 H 1.09001 * 109.47201 * 55.00580 * 5 4 2 7 7 N 1.46896 * 109.47269 * 295.00083 * 5 4 2 8 8 C 1.50705 * 109.46838 * 175.00137 * 5 4 2 9 9 C 1.38240 * 119.99622 * 259.99828 * 8 5 4 10 10 C 1.38239 * 119.99368 * 179.97438 * 9 8 5 11 11 C 1.38231 * 120.00353 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00100 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47259 * 89.99885 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72713 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.38233 * 119.99938 * 0.27397 * 11 10 9 22 22 C 1.38230 * 120.00087 * 79.98304 * 8 5 4 23 23 H 1.09003 * 109.47229 * 300.00614 * 1 2 3 24 24 H 1.09003 * 109.47333 * 60.00210 * 1 2 3 25 25 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47229 * 239.99386 * 2 1 3 27 27 H 1.08995 * 109.47825 * 59.99718 * 3 2 1 28 28 H 1.09005 * 109.47145 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46900 * 299.99599 * 3 2 1 30 30 H 1.09001 * 109.47425 * 55.00493 * 4 2 1 31 31 H 1.08997 * 109.47673 * 294.99768 * 4 2 1 32 32 H 1.00902 * 111.00346 * 299.99788 * 7 5 4 33 33 H 1.00900 * 111.00209 * 63.95414 * 7 5 4 34 34 H 1.07994 * 120.00385 * 359.97438 * 9 8 5 35 35 H 1.08000 * 119.99283 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47545 * 330.00225 * 12 11 10 37 37 H 1.08998 * 109.47669 * 210.00168 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.00309 * 179.73170 * 21 11 10 40 40 H 1.08005 * 119.99944 * 359.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1880 6 1 3.9954 0.1611 1.0528 7 7 3.9489 -1.6896 0.0597 8 6 4.0772 -1.4302 2.4724 9 6 4.6034 -0.6125 3.4549 10 6 5.0730 -1.1621 4.6332 11 6 5.0158 -2.5292 4.8293 12 6 5.5282 -3.1284 6.1135 13 6 4.4086 -3.1911 7.1204 14 1 3.4244 -2.8333 6.8565 15 6 4.6392 -3.7110 8.3764 16 7 5.8362 -4.1525 8.6956 17 14 3.2513 -3.7894 9.6242 18 1 2.1489 -4.6264 9.0864 19 1 3.7545 -4.3863 10.8874 20 1 2.7472 -2.4182 9.8905 21 6 4.4943 -3.3474 3.8447 22 6 4.0207 -2.7975 2.6681 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.5617 -2.6158 0.1618 33 1 3.6730 -1.2772 -0.8189 34 1 4.6477 0.4557 3.3020 35 1 5.4837 -0.5231 5.4010 36 1 6.3356 -2.5103 6.5062 37 1 5.9012 -4.1344 5.9218 38 1 5.9985 -4.5186 9.5791 39 1 4.4536 -4.4160 3.9960 40 1 3.6089 -3.4363 1.9007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:04 Heat of formation + Delta-G solvation = -27.527027 kcal Electronic energy + Delta-G solvation = -17477.862596 eV Core-core repulsion = 14869.103499 eV Total energy + Delta-G solvation = -2608.759098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55040 -38.39157 -35.65046 -34.59718 -32.49860 -31.65455 -29.41374 -28.11447 -27.96940 -25.52066 -23.63025 -23.10260 -21.25321 -20.53476 -18.53362 -17.68443 -16.81660 -16.41493 -16.07834 -15.76623 -15.43113 -15.25581 -14.76744 -14.51368 -14.21899 -14.13709 -13.57400 -13.53439 -13.27296 -13.11378 -12.93226 -12.65151 -12.60406 -12.42736 -12.30250 -11.82938 -11.72211 -11.55236 -11.50072 -11.41875 -11.20340 -10.62016 -9.68931 -9.61826 -9.15186 -8.21266 -6.35590 0.63370 0.64794 1.38001 1.41063 1.49507 2.38387 3.01645 3.08687 3.65949 3.84236 3.96327 4.02337 4.11379 4.23140 4.27009 4.40320 4.42818 4.58181 4.73468 4.77083 4.79221 4.84274 4.96373 5.03538 5.08863 5.12188 5.15020 5.22965 5.31411 5.35146 5.42378 5.47177 5.50408 5.64597 5.74756 5.79168 6.11405 6.12486 6.28807 6.32929 6.69120 6.76844 7.33032 8.87756 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.004395 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.103847 B = 6369.604447 C = 6776.706015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.140 4.140 5 C 0.145 3.855 6 H 0.094 0.906 7 N -0.844 5.844 8 C -0.095 4.095 9 C -0.113 4.113 10 C -0.137 4.137 11 C -0.069 4.069 12 C 0.056 3.944 13 C -0.530 4.530 14 H 0.053 0.947 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.138 4.138 22 C -0.102 4.102 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.343 0.657 33 H 0.351 0.649 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 8.867 -19.105 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.180 4.180 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.376 5.376 8 C -0.095 4.095 9 C -0.131 4.131 10 C -0.155 4.155 11 C -0.069 4.069 12 C 0.019 3.981 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.157 4.157 22 C -0.120 4.120 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.489 8.910 -18.744 22.423 hybrid contribution -1.203 -0.478 1.152 1.733 sum -9.692 8.432 -17.593 21.784 Atomic orbital electron populations 1.21835 0.94943 1.01738 1.01960 1.21100 0.95993 0.96582 0.97391 1.21916 1.01299 0.95586 1.02011 1.22412 0.95854 1.00852 0.98846 1.20225 0.92713 0.96554 0.87161 0.88835 1.58902 1.67982 1.06264 1.04467 1.19891 1.00038 0.93337 0.96251 1.21122 0.98769 1.00268 0.92980 1.21066 1.02023 0.94298 0.98140 1.20376 0.96560 0.94544 0.95434 1.18092 0.95391 0.94391 0.90179 1.21343 0.96355 1.41211 0.97890 0.92849 1.25954 0.98399 0.94621 1.00440 1.70080 1.22999 1.42149 1.21851 0.85476 0.78895 0.78866 0.77690 1.19235 1.20385 1.19207 1.21081 1.00733 0.99492 0.94361 1.20957 0.99660 0.95173 0.96256 0.93238 0.91719 0.92872 0.90421 0.93098 0.92290 0.91811 0.92258 0.92415 0.84301 0.83361 0.84259 0.87161 0.98112 0.98127 0.92505 0.87288 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.28 2.79 -10.80 -0.03 -1.31 16 3 C -0.15 -2.01 8.95 71.98 0.64 -1.37 16 4 C -0.14 -2.61 4.31 30.60 0.13 -2.48 16 5 C 0.14 3.04 2.91 44.17 0.13 3.17 16 6 H 0.09 1.87 6.21 -2.39 -0.01 1.86 16 7 N -0.84 -15.53 9.01 -171.79 -1.55 -17.07 16 8 C -0.09 -2.80 4.96 -19.86 -0.10 -2.90 16 9 C -0.11 -3.69 9.67 22.27 0.22 -3.47 16 10 C -0.14 -5.60 9.70 22.27 0.22 -5.38 16 11 C -0.07 -3.21 5.07 -19.87 -0.10 -3.31 16 12 C 0.06 3.16 5.10 29.10 0.15 3.31 16 13 C -0.53 -31.25 9.09 25.60 0.23 -31.02 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.00 0.23 5.46 84.65 0.46 0.69 16 16 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 17 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.14 -5.65 9.70 22.27 0.22 -5.43 16 22 C -0.10 -3.30 9.29 22.27 0.21 -3.10 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 0.91 6.65 -2.39 -0.02 0.90 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.79 6.46 -2.38 -0.02 0.78 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.34 5.96 7.35 -89.69 -0.66 5.30 16 33 H 0.35 4.81 7.44 -89.69 -0.67 4.14 16 34 H 0.14 3.64 8.04 -2.91 -0.02 3.61 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.00 0.03 8.09 -2.39 -0.02 0.01 16 37 H 0.00 0.02 8.08 -2.39 -0.02 0.01 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.14 3.52 6.67 -2.91 -0.02 3.50 16 Total: -1.00 -66.34 323.49 3.49 -62.85 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.31 Total: 18.17 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 3.03 Total: -53.94 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.26 Total: -74.11 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.34 3.49 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.324 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds