Wall clock time and date at job start Mon Mar 30 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 C 1.52999 * 109.47069 * 120.00512 * 2 1 3 5 5 C 1.52990 * 109.47287 * 65.68894 * 4 2 1 6 6 H 1.08998 * 109.47386 * 305.52225 * 5 4 2 7 7 N 1.46903 * 109.47613 * 65.52055 * 5 4 2 8 8 C 1.50698 * 109.47275 * 185.52329 * 5 4 2 9 9 C 1.38237 * 120.00546 * 99.99492 * 8 5 4 10 10 C 1.38226 * 120.00462 * 180.02562 * 9 8 5 11 11 C 1.38241 * 119.99844 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46836 * 90.00489 * 12 11 10 14 14 H 1.08001 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99806 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47017 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47011 * 120.00199 * 17 15 13 20 20 H 1.48494 * 109.47235 * 239.99828 * 17 15 13 21 21 C 1.38234 * 120.00099 * 0.25539 * 11 10 9 22 22 C 1.38239 * 119.99824 * 359.47070 * 21 11 10 23 23 H 1.08999 * 109.46933 * 299.99787 * 1 2 3 24 24 H 1.09004 * 109.47129 * 59.99634 * 1 2 3 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47026 * 240.00316 * 2 1 3 27 27 H 1.09005 * 109.46904 * 59.24445 * 3 2 1 28 28 H 1.09001 * 109.47027 * 179.24018 * 3 2 1 29 29 H 1.09002 * 109.47571 * 299.24157 * 3 2 1 30 30 H 1.08996 * 109.47193 * 305.68363 * 4 2 1 31 31 H 1.09006 * 109.46920 * 185.68802 * 4 2 1 32 32 H 1.00903 * 110.99747 * 293.32267 * 7 5 4 33 33 H 1.00909 * 110.99735 * 57.27375 * 7 5 4 34 34 H 1.08000 * 119.99207 * 359.97438 * 9 8 5 35 35 H 1.08002 * 120.00268 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47296 * 330.00137 * 12 11 10 37 37 H 1.08994 * 109.46481 * 210.00115 * 12 11 10 38 38 H 0.97002 * 119.99670 * 180.02562 * 16 15 13 39 39 H 1.07998 * 119.99912 * 179.72235 * 21 11 10 40 40 H 1.08000 * 119.99752 * 180.27367 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6502 -2.1991 1.1796 6 1 0.5740 -2.2843 1.0287 7 7 2.3537 -2.8391 0.0601 8 6 2.0320 -2.8806 2.4683 9 6 1.0739 -3.1148 3.4368 10 6 1.4243 -3.7394 4.6191 11 6 2.7329 -4.1304 4.8328 12 6 3.1150 -4.8109 6.1220 13 6 2.9600 -6.3019 5.9681 14 1 2.6185 -6.7154 5.0306 15 6 3.2542 -7.1382 7.0240 16 7 3.6705 -6.6347 8.1654 17 14 3.0614 -8.9864 6.8335 18 1 2.5825 -9.2954 5.4622 19 1 4.3720 -9.6468 7.0602 20 1 2.0770 -9.4864 7.8265 21 6 3.6921 -3.8920 3.8663 22 6 3.3405 -3.2724 2.6816 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.6656 1.9602 0.8832 28 1 3.1299 1.4425 0.0136 29 1 1.6878 1.9524 -0.8967 30 1 1.5960 -0.2698 2.1362 31 1 3.1253 -0.6340 1.3015 32 1 2.0336 -2.4738 -0.8243 33 1 3.3530 -2.7349 0.1540 34 1 0.0516 -2.8089 3.2700 35 1 0.6757 -3.9219 5.3759 36 1 2.4668 -4.4591 6.9245 37 1 4.1518 -4.5763 6.3631 38 1 3.8778 -7.2231 8.9082 39 1 4.7153 -4.1934 4.0351 40 1 4.0890 -3.0902 1.9247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:06 Heat of formation + Delta-G solvation = -10.747145 kcal Electronic energy + Delta-G solvation = -17435.303893 eV Core-core repulsion = 14827.272426 eV Total energy + Delta-G solvation = -2608.031467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24227 -37.33681 -34.24491 -32.97086 -30.87701 -30.16896 -28.12619 -27.42683 -26.63602 -23.82306 -22.14140 -21.68668 -20.09947 -19.51891 -16.57656 -16.26005 -15.56652 -15.19251 -14.73794 -14.35811 -14.28424 -13.98962 -13.94511 -13.02076 -12.78409 -12.69707 -12.47657 -12.44325 -12.02739 -11.84413 -11.47159 -11.34753 -11.23381 -10.89667 -10.83407 -10.66358 -10.61905 -10.37825 -10.12734 -9.48923 -9.38710 -8.67709 -8.40494 -8.19937 -7.62640 -6.01989 -4.05481 2.12351 2.14017 3.31371 3.38848 3.44956 4.36699 4.50374 4.56729 4.64901 4.70977 4.80604 5.16625 5.24873 5.32209 5.33844 5.41222 5.46614 5.54062 5.62303 5.65146 5.71724 5.77815 5.85233 5.96523 6.05396 6.12309 6.15862 6.33456 6.36791 6.69625 6.78128 7.08945 7.23756 7.24089 7.28484 7.45889 7.54017 7.80323 7.90111 7.94490 8.35397 9.00399 9.58358 11.07887 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.003980 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.343647 B = 7034.139523 C = 7132.493854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.145 4.145 5 C 0.137 3.863 6 H 0.084 0.916 7 N -0.839 5.839 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.034 4.034 12 C 0.046 3.954 13 C -0.509 4.509 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.125 4.125 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.335 0.665 33 H 0.339 0.661 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 13.640 -15.409 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.185 4.185 5 C 0.026 3.974 6 H 0.102 0.898 7 N -0.368 5.368 8 C -0.107 4.107 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.034 4.034 12 C 0.010 3.990 13 C -0.547 4.547 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.143 4.143 22 C -0.126 4.126 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.125 12.906 -14.984 20.201 hybrid contribution 0.304 -0.116 -0.174 0.368 sum -3.821 12.790 -15.158 20.198 Atomic orbital electron populations 1.21910 0.95160 1.02044 1.01665 1.21144 0.96084 0.96206 0.98272 1.21832 1.00879 0.96035 1.01653 1.22486 1.01183 0.96724 0.98065 1.20284 0.98519 0.89669 0.88904 0.89765 1.58929 1.09792 1.63882 1.04238 1.19388 0.94016 1.02258 0.94998 1.20812 0.98023 1.00444 0.94254 1.21032 0.96553 0.99447 0.97159 1.20673 0.92514 0.92417 0.97795 1.18364 0.97405 0.94733 0.88531 1.21116 1.44639 0.90472 0.98511 0.92391 1.25020 0.95200 0.98984 0.95220 1.69975 1.45548 1.35076 1.02847 0.86480 0.77749 0.85272 0.78251 1.19618 1.20955 1.20953 1.21050 0.99711 0.99859 0.93691 1.20687 0.95305 0.99795 0.96767 0.92539 0.92937 0.92261 0.91661 0.92614 0.92824 0.92885 0.91193 0.91904 0.85140 0.84776 0.87381 0.86565 0.95410 0.95415 0.92943 0.86650 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.97 37.16 0.33 -0.88 16 2 C -0.10 -0.82 2.81 -90.62 -0.25 -1.07 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C -0.15 -1.50 4.27 -26.74 -0.11 -1.61 16 5 C 0.14 1.67 2.91 -68.87 -0.20 1.47 16 6 H 0.08 1.02 6.21 -51.93 -0.32 0.69 16 7 N -0.84 -9.45 8.94 -5.66 -0.05 -9.50 16 8 C -0.11 -1.69 4.96 -104.62 -0.52 -2.21 16 9 C -0.12 -2.00 9.67 -39.59 -0.38 -2.38 16 10 C -0.12 -2.48 9.70 -39.58 -0.38 -2.87 16 11 C -0.03 -0.76 5.07 -104.62 -0.53 -1.29 16 12 C 0.05 1.22 5.11 -29.03 -0.15 1.07 16 13 C -0.51 -14.56 9.09 -34.44 -0.31 -14.88 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.13 -2.51 9.70 -39.58 -0.38 -2.89 16 22 C -0.11 -1.82 9.31 -39.58 -0.37 -2.19 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.50 6.48 -51.93 -0.34 0.16 16 26 H 0.07 0.51 6.70 -51.92 -0.35 0.16 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.34 3.04 7.57 -39.29 -0.30 2.74 16 33 H 0.34 3.60 7.44 -39.29 -0.29 3.30 16 34 H 0.11 1.56 8.04 -52.49 -0.42 1.14 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.52 6.72 -52.49 -0.35 1.17 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -30.22 323.78 -9.03 -39.26 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.56 Total: 3.49 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -3.02 Total: -28.97 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.69 Total: -35.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.22 -9.03 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds