Wall clock time and date at job start Mon Mar 30 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 C 1.52999 * 109.47069 * 120.00512 * 2 1 3 5 5 C 1.52990 * 109.47287 * 65.68894 * 4 2 1 6 6 H 1.08998 * 109.47386 * 305.52225 * 5 4 2 7 7 N 1.46903 * 109.47613 * 65.52055 * 5 4 2 8 8 C 1.50698 * 109.47275 * 185.52329 * 5 4 2 9 9 C 1.38237 * 120.00546 * 99.99492 * 8 5 4 10 10 C 1.38226 * 120.00462 * 180.02562 * 9 8 5 11 11 C 1.38241 * 119.99844 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46836 * 90.00489 * 12 11 10 14 14 H 1.08001 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99806 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99992 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47017 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47011 * 120.00199 * 17 15 13 20 20 H 1.48494 * 109.47235 * 239.99828 * 17 15 13 21 21 C 1.38234 * 120.00099 * 0.25539 * 11 10 9 22 22 C 1.38239 * 119.99824 * 359.47070 * 21 11 10 23 23 H 1.08999 * 109.46933 * 299.99787 * 1 2 3 24 24 H 1.09004 * 109.47129 * 59.99634 * 1 2 3 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47026 * 240.00316 * 2 1 3 27 27 H 1.09005 * 109.46904 * 59.24445 * 3 2 1 28 28 H 1.09001 * 109.47027 * 179.24018 * 3 2 1 29 29 H 1.09002 * 109.47571 * 299.24157 * 3 2 1 30 30 H 1.08996 * 109.47193 * 305.68363 * 4 2 1 31 31 H 1.09006 * 109.46920 * 185.68802 * 4 2 1 32 32 H 1.00903 * 110.99747 * 293.32267 * 7 5 4 33 33 H 1.00909 * 110.99735 * 57.27375 * 7 5 4 34 34 H 1.08000 * 119.99207 * 359.97438 * 9 8 5 35 35 H 1.08002 * 120.00268 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47296 * 330.00137 * 12 11 10 37 37 H 1.08994 * 109.46481 * 210.00115 * 12 11 10 38 38 H 0.97002 * 119.99670 * 180.02562 * 16 15 13 39 39 H 1.07998 * 119.99912 * 179.72235 * 21 11 10 40 40 H 1.08000 * 119.99752 * 180.27367 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6502 -2.1991 1.1796 6 1 0.5740 -2.2843 1.0287 7 7 2.3537 -2.8391 0.0601 8 6 2.0320 -2.8806 2.4683 9 6 1.0739 -3.1148 3.4368 10 6 1.4243 -3.7394 4.6191 11 6 2.7329 -4.1304 4.8328 12 6 3.1150 -4.8109 6.1220 13 6 2.9600 -6.3019 5.9681 14 1 2.6185 -6.7154 5.0306 15 6 3.2542 -7.1382 7.0240 16 7 3.6705 -6.6347 8.1654 17 14 3.0614 -8.9864 6.8335 18 1 2.5825 -9.2954 5.4622 19 1 4.3720 -9.6468 7.0602 20 1 2.0770 -9.4864 7.8265 21 6 3.6921 -3.8920 3.8663 22 6 3.3405 -3.2724 2.6816 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.6656 1.9602 0.8832 28 1 3.1299 1.4425 0.0136 29 1 1.6878 1.9524 -0.8967 30 1 1.5960 -0.2698 2.1362 31 1 3.1253 -0.6340 1.3015 32 1 2.0336 -2.4738 -0.8243 33 1 3.3530 -2.7349 0.1540 34 1 0.0516 -2.8089 3.2700 35 1 0.6757 -3.9219 5.3759 36 1 2.4668 -4.4591 6.9245 37 1 4.1518 -4.5763 6.3631 38 1 3.8778 -7.2231 8.9082 39 1 4.7153 -4.1934 4.0351 40 1 4.0890 -3.0902 1.9247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:06 Heat of formation + Delta-G solvation = -27.813486 kcal Electronic energy + Delta-G solvation = -17436.043945 eV Core-core repulsion = 14827.272426 eV Total energy + Delta-G solvation = -2608.771519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54086 -38.38326 -35.64696 -34.59860 -32.50259 -31.65062 -29.41630 -28.10777 -27.96651 -25.51613 -23.62020 -23.09804 -21.24548 -20.54266 -18.53867 -17.67480 -16.82214 -16.40871 -16.05315 -15.76710 -15.43658 -15.26333 -14.76644 -14.54292 -14.15760 -14.13648 -13.72654 -13.40369 -13.25374 -13.05597 -12.97596 -12.69730 -12.59367 -12.43748 -12.29901 -11.80579 -11.70997 -11.51393 -11.48700 -11.42273 -11.21297 -10.62676 -9.68624 -9.60594 -9.15211 -8.21533 -6.35444 0.63707 0.65315 1.38385 1.38500 1.52883 2.38742 3.01922 3.08397 3.65921 3.84367 3.97005 4.02894 4.11823 4.23853 4.28289 4.40590 4.43144 4.58541 4.74258 4.77432 4.79856 4.84689 4.96568 5.03787 5.09409 5.12609 5.15228 5.23403 5.32053 5.35543 5.42723 5.47600 5.50560 5.64993 5.75181 5.79627 6.11689 6.13025 6.29361 6.33920 6.69403 6.77370 7.33249 8.87656 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.003980 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.343647 B = 7034.139523 C = 7132.493854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.138 4.138 5 C 0.144 3.856 6 H 0.092 0.908 7 N -0.846 5.846 8 C -0.094 4.094 9 C -0.113 4.113 10 C -0.137 4.137 11 C -0.069 4.069 12 C 0.056 3.944 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.139 4.139 22 C -0.101 4.101 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.351 0.649 33 H 0.343 0.657 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 13.943 -18.154 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.178 4.178 5 C 0.033 3.967 6 H 0.110 0.890 7 N -0.378 5.378 8 C -0.095 4.095 9 C -0.132 4.132 10 C -0.156 4.156 11 C -0.069 4.069 12 C 0.019 3.981 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.157 4.157 22 C -0.120 4.120 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.897 13.224 -17.745 22.666 hybrid contribution 0.533 -0.117 0.617 0.824 sum -4.364 13.107 -17.127 22.004 Atomic orbital electron populations 1.21917 0.94865 1.02011 1.02039 1.21105 0.96258 0.96347 0.97430 1.21829 1.00910 0.95680 1.01987 1.22401 1.01075 0.95452 0.98877 1.20224 0.99049 0.90236 0.87216 0.88988 1.58869 1.10166 1.64091 1.04682 1.19897 0.93193 1.00195 0.96199 1.21118 0.99905 0.99139 0.93011 1.21065 0.95487 1.00420 0.98584 1.20384 0.94390 0.95184 0.96991 1.18099 0.95161 0.94502 0.90309 1.21400 1.44859 0.91926 0.98430 0.93004 1.25954 0.94571 1.04234 0.94725 1.70092 1.46202 1.37063 1.03686 0.85361 0.78144 0.78877 0.78465 1.19077 1.19980 1.19965 1.21086 0.99059 1.00904 0.94664 1.20957 0.96672 0.98391 0.95942 0.92955 0.91887 0.92453 0.90607 0.93077 0.92804 0.91838 0.92138 0.92056 0.83369 0.84259 0.84278 0.87159 0.98029 0.98045 0.92518 0.87285 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.97 71.98 0.65 -1.32 16 2 C -0.09 -1.24 2.81 -10.79 -0.03 -1.27 16 3 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 4 C -0.14 -2.46 4.27 30.59 0.13 -2.33 16 5 C 0.14 3.03 2.91 44.16 0.13 3.16 16 6 H 0.09 1.87 6.21 -2.39 -0.01 1.85 16 7 N -0.85 -16.04 8.94 -171.81 -1.54 -17.58 16 8 C -0.09 -2.79 4.96 -19.86 -0.10 -2.89 16 9 C -0.11 -3.71 9.67 22.27 0.22 -3.49 16 10 C -0.14 -5.62 9.70 22.27 0.22 -5.40 16 11 C -0.07 -3.23 5.07 -19.86 -0.10 -3.33 16 12 C 0.06 3.15 5.11 29.10 0.15 3.30 16 13 C -0.53 -31.38 9.09 25.60 0.23 -31.14 16 14 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 15 C 0.00 0.18 5.46 84.65 0.46 0.65 16 16 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 17 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.14 -5.68 9.70 22.27 0.22 -5.46 16 22 C -0.10 -3.29 9.31 22.27 0.21 -3.08 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.77 6.48 -2.39 -0.02 0.75 16 26 H 0.08 0.88 6.70 -2.38 -0.02 0.87 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.35 4.98 7.57 -89.69 -0.68 4.30 16 33 H 0.34 6.05 7.44 -89.69 -0.67 5.38 16 34 H 0.14 3.64 8.04 -2.91 -0.02 3.62 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.00 0.08 8.09 -2.39 -0.02 0.06 16 37 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.14 3.54 6.72 -2.91 -0.02 3.52 16 Total: -1.00 -66.82 323.78 3.48 -63.34 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.33 Total: 17.59 kcal Atomic # 6 Polarization: -56.85 SS G_CDS: 3.03 Total: -53.82 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.25 Total: -74.58 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.82 3.48 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.523 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds