Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53005 * 109.47197 * 240.00648 * 2 1 3 5 5 C 1.52998 * 109.47459 * 119.99830 * 2 1 3 6 6 H 1.09001 * 109.47154 * 178.72661 * 5 2 1 7 7 N 1.46906 * 109.46644 * 58.72969 * 5 2 1 8 8 C 1.50694 * 109.47429 * 298.72839 * 5 2 1 9 9 C 1.38263 * 119.99741 * 74.02866 * 8 5 2 10 10 C 1.38218 * 119.99721 * 179.78798 * 9 8 5 11 11 C 1.38251 * 119.99864 * 0.44231 * 10 9 8 12 12 C 1.38209 * 120.00191 * 359.81146 * 11 10 9 13 13 C 1.38206 * 120.00099 * 254.30259 * 8 5 2 14 14 C 1.50699 * 119.99917 * 359.97438 * 13 8 5 15 15 C 1.50696 * 109.47354 * 93.03627 * 14 13 8 16 16 H 1.08009 * 119.99797 * 4.17837 * 15 14 13 17 17 C 1.37868 * 120.00527 * 184.18519 * 15 14 13 18 18 N 1.31515 * 120.00363 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99752 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47164 * 90.00215 * 19 17 15 21 21 H 1.48498 * 109.47203 * 210.00174 * 19 17 15 22 22 H 1.48502 * 109.47224 * 329.99930 * 19 17 15 23 23 H 1.09003 * 109.47370 * 306.21256 * 1 2 3 24 24 H 1.08996 * 109.47536 * 66.21671 * 1 2 3 25 25 H 1.09007 * 109.46908 * 186.21415 * 1 2 3 26 26 H 1.09000 * 109.47393 * 184.84073 * 3 2 1 27 27 H 1.08997 * 109.47397 * 304.84449 * 3 2 1 28 28 H 1.09006 * 109.46787 * 64.84354 * 3 2 1 29 29 H 1.09000 * 109.46341 * 299.99364 * 4 2 1 30 30 H 1.08991 * 109.47230 * 59.99769 * 4 2 1 31 31 H 1.09001 * 109.46947 * 179.97438 * 4 2 1 32 32 H 1.00905 * 110.99881 * 176.04406 * 7 5 2 33 33 H 1.00899 * 110.99821 * 299.99578 * 7 5 2 34 34 H 1.08000 * 120.00414 * 359.97438 * 9 8 5 35 35 H 1.07998 * 119.99772 * 180.27777 * 10 9 8 36 36 H 1.08007 * 120.00133 * 179.83745 * 11 10 9 37 37 H 1.08010 * 120.00213 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46938 * 213.03336 * 14 13 8 39 39 H 1.08997 * 109.47063 * 333.02978 * 14 13 8 40 40 H 0.97005 * 119.99746 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7212 1.2492 6 1 3.1298 -0.7410 1.2378 7 7 1.5254 -2.0971 1.2646 8 6 1.5637 0.0071 2.4795 9 6 0.2401 -0.0852 2.8684 10 6 -0.1958 0.5793 3.9993 11 6 0.6896 1.3436 4.7363 12 6 2.0115 1.4401 4.3445 13 6 2.4486 0.7719 3.2158 14 6 3.8899 0.8771 2.7886 15 6 4.0667 2.0892 1.9110 16 1 3.2358 2.7578 1.7398 17 6 5.2888 2.3448 1.3263 18 7 5.4429 3.4024 0.5599 19 14 6.7259 1.1889 1.6227 20 1 6.7301 0.1277 0.5838 21 1 7.9976 1.9527 1.5553 22 1 6.5926 0.5673 2.9648 23 1 -0.3634 0.6071 0.8292 24 1 -0.3634 0.4144 -0.9403 25 1 -0.3633 -1.0217 0.1112 26 1 3.1264 1.4439 -0.0867 27 1 1.6074 1.9808 -0.8434 28 1 1.7490 1.9307 0.9303 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.8998 -2.6144 2.0459 33 1 0.5165 -2.1057 1.2754 34 1 -0.4525 -0.6790 2.2903 35 1 -1.2287 0.5035 4.3056 36 1 0.3484 1.8650 5.6185 37 1 2.7033 2.0369 4.9206 38 1 4.5241 0.9712 3.6702 39 1 4.1705 -0.0178 2.2332 40 1 6.3027 3.5820 0.1483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = 11.206679 kcal Electronic energy + Delta-G solvation = -19213.967335 eV Core-core repulsion = 16606.887857 eV Total energy + Delta-G solvation = -2607.079478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.81888 -36.82045 -33.61498 -32.47476 -31.49929 -29.82423 -27.57934 -26.86258 -26.32236 -24.37502 -22.97718 -21.13757 -19.96764 -18.01720 -16.93009 -16.16126 -15.54467 -15.03416 -14.58423 -14.18079 -14.02474 -13.44249 -13.21132 -12.89331 -12.71823 -12.26529 -11.99720 -11.92870 -11.77352 -11.56153 -11.33172 -11.00904 -10.90683 -10.72731 -10.40841 -10.11625 -10.09587 -10.03521 -9.90449 -9.74344 -9.10605 -8.55047 -8.47381 -8.10361 -7.79345 -6.06825 -4.02559 1.91521 2.03312 3.27325 3.36156 3.38389 4.35188 4.40993 4.96429 5.22286 5.26538 5.33282 5.45605 5.52228 5.53956 5.59989 5.79544 5.98079 6.02588 6.16664 6.20946 6.29324 6.33618 6.37884 6.51568 6.57667 6.65273 6.74847 6.81351 6.83284 6.94575 6.99729 7.04240 7.11412 7.16860 7.43306 7.58441 7.61819 7.68025 7.70983 7.78160 8.49432 8.98461 9.52828 11.04888 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.010513 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.732438 B = 2662.777978 C = 3417.273685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C -0.138 4.138 4 C -0.130 4.130 5 C 0.136 3.864 6 H 0.101 0.899 7 N -0.839 5.839 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.148 4.148 11 C -0.125 4.125 12 C -0.122 4.122 13 C -0.022 4.022 14 C 0.011 3.989 15 C -0.501 4.501 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.867 3.133 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.267 1.267 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.335 0.665 33 H 0.332 0.668 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.023 0.977 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -8.058 2.731 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.187 4.187 5 C 0.025 3.975 6 H 0.119 0.881 7 N -0.367 5.367 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.166 4.166 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.022 4.022 14 C -0.026 4.026 15 C -0.539 4.539 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.694 3.306 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.192 1.192 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.555 -8.054 1.887 11.900 hybrid contribution 0.328 -0.070 1.088 1.139 sum -8.227 -8.125 2.975 11.939 Atomic orbital electron populations 1.22114 0.96294 1.00579 1.01518 1.20432 0.94259 0.96693 0.93627 1.22212 1.04082 0.92590 1.00612 1.21738 1.00968 0.99955 0.96051 1.20593 1.00658 0.85620 0.90619 0.88124 1.59170 1.12798 1.14273 1.50479 1.20514 0.93414 0.99924 0.97807 1.20886 0.95252 1.00924 0.96854 1.20850 0.98847 1.00223 0.96664 1.21006 0.93958 0.99593 0.99757 1.21062 0.95490 0.99893 0.97550 1.20136 0.97567 0.92319 0.92205 1.18892 0.88329 0.98301 0.97099 1.20926 0.98051 1.07385 1.27537 0.89999 1.24910 0.98125 0.95037 0.94908 1.69885 1.24648 1.26859 1.32059 0.86977 0.82760 0.81508 0.79345 1.20113 1.21397 1.19177 0.92199 0.93345 0.93280 0.89133 0.95075 0.92006 0.92326 0.93870 0.92952 0.85289 0.85442 0.87032 0.87350 0.87195 0.86479 0.95859 0.95495 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 6.91 37.15 0.26 -1.94 16 2 C -0.05 -0.85 0.62 -154.51 -0.10 -0.94 16 3 C -0.14 -2.83 6.71 37.16 0.25 -2.58 16 4 C -0.13 -2.12 8.33 37.16 0.31 -1.81 16 5 C 0.14 2.33 2.22 -68.87 -0.15 2.18 16 6 H 0.10 2.00 5.44 -51.93 -0.28 1.72 16 7 N -0.84 -11.88 8.33 -5.65 -0.05 -11.92 16 8 C -0.11 -2.03 3.67 -104.63 -0.38 -2.42 16 9 C -0.12 -1.89 7.12 -39.58 -0.28 -2.17 16 10 C -0.15 -2.24 10.05 -39.58 -0.40 -2.64 16 11 C -0.12 -2.01 10.05 -39.59 -0.40 -2.41 16 12 C -0.12 -2.27 9.71 -39.58 -0.38 -2.66 16 13 C -0.02 -0.43 4.49 -104.63 -0.47 -0.90 16 14 C 0.01 0.24 3.76 -29.04 -0.11 0.13 16 15 C -0.50 -13.02 6.38 -34.45 -0.22 -13.24 16 16 H 0.08 2.33 6.31 -52.48 -0.33 2.00 16 17 C 0.07 1.95 5.34 -17.82 -0.10 1.86 16 18 N -0.90 -26.05 13.96 55.43 0.77 -25.28 16 19 Si 0.87 20.73 27.39 -169.99 -4.66 16.08 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.19 6.66 56.52 0.38 -5.81 16 23 H 0.06 0.92 5.72 -51.93 -0.30 0.63 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.64 6.15 -51.92 -0.32 0.32 16 26 H 0.09 2.15 6.19 -51.93 -0.32 1.83 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.37 5.07 -51.93 -0.26 1.11 16 29 H 0.06 0.89 7.64 -51.93 -0.40 0.49 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.34 4.43 9.06 -39.29 -0.36 4.08 16 33 H 0.33 4.22 5.59 -39.29 -0.22 4.00 16 34 H 0.11 1.51 5.46 -52.49 -0.29 1.22 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.02 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.03 0.61 4.95 -51.93 -0.26 0.35 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -27.46 296.02 -7.48 -34.94 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.84 Total: 11.27 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -2.17 Total: -29.54 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.73 Total: -37.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.66 Total: 16.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.46 -7.48 -34.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.146 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds