Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53005 * 109.47197 * 240.00648 * 2 1 3 5 5 C 1.52998 * 109.47459 * 119.99830 * 2 1 3 6 6 H 1.09001 * 109.47154 * 178.72661 * 5 2 1 7 7 N 1.46906 * 109.46644 * 58.72969 * 5 2 1 8 8 C 1.50694 * 109.47429 * 298.72839 * 5 2 1 9 9 C 1.38263 * 119.99741 * 74.02866 * 8 5 2 10 10 C 1.38218 * 119.99721 * 179.78798 * 9 8 5 11 11 C 1.38251 * 119.99864 * 0.44231 * 10 9 8 12 12 C 1.38209 * 120.00191 * 359.81146 * 11 10 9 13 13 C 1.38206 * 120.00099 * 254.30259 * 8 5 2 14 14 C 1.50699 * 119.99917 * 359.97438 * 13 8 5 15 15 C 1.50696 * 109.47354 * 93.03627 * 14 13 8 16 16 H 1.08009 * 119.99797 * 4.17837 * 15 14 13 17 17 C 1.37868 * 120.00527 * 184.18519 * 15 14 13 18 18 N 1.31515 * 120.00363 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99752 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47164 * 90.00215 * 19 17 15 21 21 H 1.48498 * 109.47203 * 210.00174 * 19 17 15 22 22 H 1.48502 * 109.47224 * 329.99930 * 19 17 15 23 23 H 1.09003 * 109.47370 * 306.21256 * 1 2 3 24 24 H 1.08996 * 109.47536 * 66.21671 * 1 2 3 25 25 H 1.09007 * 109.46908 * 186.21415 * 1 2 3 26 26 H 1.09000 * 109.47393 * 184.84073 * 3 2 1 27 27 H 1.08997 * 109.47397 * 304.84449 * 3 2 1 28 28 H 1.09006 * 109.46787 * 64.84354 * 3 2 1 29 29 H 1.09000 * 109.46341 * 299.99364 * 4 2 1 30 30 H 1.08991 * 109.47230 * 59.99769 * 4 2 1 31 31 H 1.09001 * 109.46947 * 179.97438 * 4 2 1 32 32 H 1.00905 * 110.99881 * 176.04406 * 7 5 2 33 33 H 1.00899 * 110.99821 * 299.99578 * 7 5 2 34 34 H 1.08000 * 120.00414 * 359.97438 * 9 8 5 35 35 H 1.07998 * 119.99772 * 180.27777 * 10 9 8 36 36 H 1.08007 * 120.00133 * 179.83745 * 11 10 9 37 37 H 1.08010 * 120.00213 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46938 * 213.03336 * 14 13 8 39 39 H 1.08997 * 109.47063 * 333.02978 * 14 13 8 40 40 H 0.97005 * 119.99746 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7212 1.2492 6 1 3.1298 -0.7410 1.2378 7 7 1.5254 -2.0971 1.2646 8 6 1.5637 0.0071 2.4795 9 6 0.2401 -0.0852 2.8684 10 6 -0.1958 0.5793 3.9993 11 6 0.6896 1.3436 4.7363 12 6 2.0115 1.4401 4.3445 13 6 2.4486 0.7719 3.2158 14 6 3.8899 0.8771 2.7886 15 6 4.0667 2.0892 1.9110 16 1 3.2358 2.7578 1.7398 17 6 5.2888 2.3448 1.3263 18 7 5.4429 3.4024 0.5599 19 14 6.7259 1.1889 1.6227 20 1 6.7301 0.1277 0.5838 21 1 7.9976 1.9527 1.5553 22 1 6.5926 0.5673 2.9648 23 1 -0.3634 0.6071 0.8292 24 1 -0.3634 0.4144 -0.9403 25 1 -0.3633 -1.0217 0.1112 26 1 3.1264 1.4439 -0.0867 27 1 1.6074 1.9808 -0.8434 28 1 1.7490 1.9307 0.9303 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.8998 -2.6144 2.0459 33 1 0.5165 -2.1057 1.2754 34 1 -0.4525 -0.6790 2.2903 35 1 -1.2287 0.5035 4.3056 36 1 0.3484 1.8650 5.6185 37 1 2.7033 2.0369 4.9206 38 1 4.5241 0.9712 3.6702 39 1 4.1705 -0.0178 2.2332 40 1 6.3027 3.5820 0.1483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -5.068734 kcal Electronic energy + Delta-G solvation = -19214.673089 eV Core-core repulsion = 16606.887857 eV Total energy + Delta-G solvation = -2607.785233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18767 -38.16578 -35.47363 -33.80457 -33.27996 -31.11001 -29.29906 -28.13748 -27.81926 -25.75523 -24.77410 -22.51075 -21.45847 -19.40129 -18.95270 -17.50575 -16.87144 -16.45723 -16.28248 -15.67837 -15.44333 -14.94955 -14.67499 -14.49633 -14.03492 -13.94739 -13.57587 -13.38819 -13.26851 -12.91185 -12.86432 -12.66915 -12.42515 -12.28019 -12.03925 -11.95147 -11.66654 -11.53979 -11.38151 -11.26017 -10.92096 -10.64144 -9.73912 -9.41268 -9.19586 -8.20135 -6.17526 0.59604 0.68107 1.33566 1.36475 1.44965 2.37710 3.00260 3.13968 3.71252 3.89199 4.09416 4.15307 4.23874 4.26385 4.29907 4.41991 4.59536 4.69900 4.82180 4.89539 4.92530 4.98717 5.04974 5.09930 5.12362 5.20888 5.25305 5.29614 5.33977 5.42038 5.54409 5.62566 5.65724 5.71159 5.75491 5.91081 6.02448 6.25983 6.34404 6.40766 6.70906 6.83677 7.39916 8.94830 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.010513 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.732438 B = 2662.777978 C = 3417.273685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.143 3.857 6 H 0.067 0.933 7 N -0.829 5.829 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.138 4.138 11 C -0.125 4.125 12 C -0.143 4.143 13 C -0.057 4.057 14 C 0.017 3.983 15 C -0.482 4.482 16 H 0.046 0.954 17 C 0.017 3.983 18 N -0.942 5.942 19 Si 0.924 3.076 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.254 1.254 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.344 0.656 33 H 0.345 0.655 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -10.336 3.449 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.183 4.183 5 C 0.031 3.969 6 H 0.085 0.915 7 N -0.359 5.359 8 C -0.120 4.120 9 C -0.135 4.135 10 C -0.156 4.156 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.057 4.057 14 C -0.020 4.020 15 C -0.520 4.520 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.584 5.584 19 Si 0.749 3.251 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.178 1.178 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.054 -10.355 2.625 15.372 hybrid contribution 0.984 0.676 0.890 1.489 sum -10.070 -9.679 3.516 14.403 Atomic orbital electron populations 1.22049 0.93697 1.02243 1.01871 1.20381 0.96278 0.94041 0.94123 1.21974 1.01338 0.95448 0.99377 1.21699 0.99585 1.00996 0.95978 1.20311 0.98810 0.87234 0.90510 0.91542 1.59065 1.13713 1.12119 1.51003 1.20590 0.94240 0.99607 0.97586 1.21188 0.94415 1.00749 0.97129 1.21320 1.00378 0.98304 0.95596 1.21315 0.92758 0.99526 1.00688 1.21156 0.97039 1.00313 0.97566 1.20005 0.96477 0.95113 0.94126 1.18715 0.90879 0.96534 0.95854 1.20999 0.96573 1.07593 1.26870 0.93602 1.25627 1.00843 0.96468 0.95010 1.70025 1.25230 1.29082 1.34039 0.86053 0.79492 0.79703 0.79866 1.19550 1.21432 1.17796 0.92604 0.92573 0.90607 0.93253 0.94931 0.94210 0.90498 0.93034 0.95154 0.84363 0.83956 0.84106 0.83564 0.84454 0.87386 0.96632 0.95377 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 6.91 71.98 0.50 -3.24 16 2 C -0.05 -1.58 0.62 -52.18 -0.03 -1.62 16 3 C -0.12 -5.26 6.71 71.98 0.48 -4.78 16 4 C -0.13 -3.94 8.33 71.98 0.60 -3.35 16 5 C 0.14 4.76 2.22 44.17 0.10 4.86 16 6 H 0.07 2.69 5.44 -2.39 -0.01 2.68 16 7 N -0.83 -21.05 8.33 -171.80 -1.43 -22.48 16 8 C -0.12 -4.04 3.67 -19.87 -0.07 -4.12 16 9 C -0.12 -3.23 7.12 22.27 0.16 -3.08 16 10 C -0.14 -3.62 10.05 22.27 0.22 -3.40 16 11 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 12 C -0.14 -5.30 9.71 22.27 0.22 -5.08 16 13 C -0.06 -2.29 4.49 -19.87 -0.09 -2.38 16 14 C 0.02 0.80 3.76 29.10 0.11 0.91 16 15 C -0.48 -26.36 6.38 25.60 0.16 -26.20 16 16 H 0.05 2.79 6.31 -2.91 -0.02 2.77 16 17 C 0.02 0.99 5.34 84.65 0.45 1.44 16 18 N -0.94 -57.57 13.96 21.44 0.30 -57.27 16 19 Si 0.92 44.05 27.39 68.60 1.88 45.93 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.25 -11.46 6.66 99.48 0.66 -10.80 16 23 H 0.06 1.53 5.72 -2.39 -0.01 1.52 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.61 6.15 -2.38 -0.01 1.59 16 26 H 0.05 2.48 6.19 -2.39 -0.01 2.47 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.83 5.07 -2.38 -0.01 1.82 16 29 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.34 8.12 9.06 -89.69 -0.81 7.30 16 33 H 0.34 7.23 5.59 -89.69 -0.50 6.73 16 34 H 0.14 3.06 5.46 -2.91 -0.02 3.05 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 36 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.02 0.74 7.45 -2.39 -0.02 0.72 16 39 H 0.03 1.31 4.95 -2.39 -0.01 1.29 16 40 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -62.72 296.02 3.47 -59.25 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.31 Total: 28.07 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 3.03 Total: -53.51 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.13 Total: -79.75 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -62.72 3.47 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.179 kcal (2) G-P(sol) polarization free energy of solvation -62.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds