Wall clock time and date at job start Mon Mar 30 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47135 * 2 1 4 4 C 1.52997 * 109.46959 * 239.99591 * 2 1 3 5 5 C 1.53002 * 109.47010 * 120.00047 * 2 1 3 6 6 H 1.08993 * 109.47100 * 179.71243 * 5 2 1 7 7 N 1.46896 * 109.47043 * 299.71094 * 5 2 1 8 8 C 1.50696 * 109.47139 * 59.71157 * 5 2 1 9 9 C 1.38265 * 120.00249 * 276.40513 * 8 5 2 10 10 C 1.38204 * 120.00149 * 180.02562 * 9 8 5 11 11 C 1.38262 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.38211 * 119.99798 * 359.97438 * 11 10 9 13 13 C 1.38214 * 120.00040 * 96.31758 * 8 5 2 14 14 C 1.50697 * 119.99862 * 0.05748 * 13 8 5 15 15 C 1.50704 * 109.46831 * 86.15819 * 14 13 8 16 16 H 1.08002 * 119.99981 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00255 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00157 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47121 * 60.00105 * 19 17 15 21 21 H 1.48504 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47181 * 300.00050 * 19 17 15 23 23 H 1.09001 * 109.46611 * 295.29762 * 1 2 3 24 24 H 1.08998 * 109.47213 * 55.28787 * 1 2 3 25 25 H 1.08997 * 109.47188 * 175.29704 * 1 2 3 26 26 H 1.09002 * 109.46618 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47152 * 299.99567 * 3 2 1 28 28 H 1.09000 * 109.47407 * 59.99834 * 3 2 1 29 29 H 1.08998 * 109.47642 * 294.18761 * 4 2 1 30 30 H 1.09001 * 109.46844 * 54.18289 * 4 2 1 31 31 H 1.09002 * 109.47286 * 174.17669 * 4 2 1 32 32 H 1.00903 * 111.00528 * 296.04942 * 7 5 2 33 33 H 1.00903 * 111.00331 * 60.00495 * 7 5 2 34 34 H 1.07999 * 119.99283 * 0.27367 * 9 8 5 35 35 H 1.07997 * 120.00021 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00026 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.00000 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47581 * 206.15357 * 14 13 8 39 39 H 1.09000 * 109.47395 * 326.15983 * 14 13 8 40 40 H 0.97001 * 120.00115 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1299 -0.7258 1.2467 7 7 1.5561 -0.0248 2.4486 8 6 1.5319 -2.1400 1.2528 9 6 0.2668 -2.4200 1.7356 10 6 -0.1990 -3.7212 1.7393 11 6 0.5998 -4.7428 1.2598 12 6 1.8639 -4.4627 0.7763 13 6 2.3296 -3.1610 0.7719 14 6 3.7082 -2.8557 0.2451 15 6 4.6926 -2.8524 1.3862 16 1 4.3539 -3.0519 2.3921 17 6 6.0257 -2.5958 1.1459 18 7 6.4383 -2.3534 -0.0792 19 14 7.2457 -2.5910 2.5604 20 1 7.2494 -3.9237 3.2155 21 1 8.6042 -2.2903 2.0414 22 1 6.8535 -1.5546 3.5489 23 1 -0.3632 0.4392 0.9291 24 1 -0.3633 0.5852 -0.8447 25 1 -0.3633 -1.0242 -0.0843 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.7642 -1.7746 -1.1987 30 1 1.5941 -0.2712 -2.1361 31 1 3.1250 -0.6320 -1.3029 32 1 1.9355 0.9087 2.5027 33 1 0.5475 -0.0071 2.4744 34 1 -0.3587 -1.6214 2.1060 35 1 -1.1869 -3.9400 2.1167 36 1 0.2359 -5.7597 1.2632 37 1 2.4880 -5.2608 0.4022 38 1 3.9963 -3.6158 -0.4810 39 1 3.7052 -1.8771 -0.2350 40 1 7.3763 -2.1732 -0.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:12 Heat of formation + Delta-G solvation = 4.602422 kcal Electronic energy + Delta-G solvation = -18996.987894 eV Core-core repulsion = 16389.622034 eV Total energy + Delta-G solvation = -2607.365860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76288 -37.00231 -33.49905 -32.24394 -31.29242 -29.88576 -27.18367 -26.93384 -26.68752 -24.48516 -23.09809 -20.98262 -20.13323 -18.09196 -16.41183 -16.15178 -15.26178 -14.97469 -14.60453 -14.33292 -14.13508 -13.80709 -13.58127 -12.55705 -12.51051 -12.35047 -11.94936 -11.83524 -11.74547 -11.45136 -11.28289 -11.21464 -10.97400 -10.88614 -10.66742 -10.57807 -10.37797 -10.20285 -9.83036 -9.44135 -9.24285 -8.36065 -8.28283 -7.99318 -7.61442 -6.00697 -4.02817 2.10406 2.21407 3.35395 3.38677 3.43666 4.41403 4.57119 5.04184 5.13439 5.16561 5.23211 5.33687 5.52985 5.58695 5.66009 5.74152 5.83517 5.93316 5.96881 6.00987 6.20282 6.23915 6.29929 6.30482 6.33384 6.51049 6.55029 6.66685 6.74897 6.84638 6.92717 7.12395 7.25591 7.34071 7.56587 7.63263 7.81457 7.88376 7.92554 7.96615 8.37827 9.02451 9.60361 11.08680 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.009256 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.383067 B = 3024.179233 C = 3757.032909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.136 3.864 6 H 0.116 0.884 7 N -0.838 5.838 8 C -0.067 4.067 9 C -0.110 4.110 10 C -0.153 4.153 11 C -0.127 4.127 12 C -0.129 4.129 13 C -0.029 4.029 14 C 0.037 3.963 15 C -0.505 4.505 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.336 0.664 33 H 0.328 0.672 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 4.099 -0.206 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.025 3.975 6 H 0.134 0.866 7 N -0.367 5.367 8 C -0.068 4.068 9 C -0.129 4.129 10 C -0.171 4.171 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.030 4.030 14 C 0.001 3.999 15 C -0.543 4.543 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.095 3.579 0.123 11.658 hybrid contribution 0.253 0.564 0.139 0.634 sum -10.842 4.142 0.262 11.609 Atomic orbital electron populations 1.21995 0.95517 1.02162 1.00531 1.21238 0.95215 0.95543 0.97762 1.21897 1.01780 0.95487 1.00834 1.22007 1.02007 1.00636 0.95287 1.20538 1.01791 0.89316 0.85861 0.86589 1.59006 1.12980 1.23049 1.41701 1.19443 0.93503 0.94620 0.99200 1.20752 0.95840 0.95903 1.00373 1.20809 0.99512 0.93293 1.03514 1.20975 0.95003 0.98199 1.00390 1.21052 0.95414 0.96758 1.01438 1.20504 0.96896 0.91746 0.93817 1.18632 0.86238 0.98612 0.96455 1.21011 0.91801 1.47837 0.93673 0.92596 1.24959 0.98292 0.95377 0.95519 1.69944 1.15914 1.48393 1.19177 0.86661 0.80108 0.78699 0.82638 1.20287 1.21391 1.20116 0.93480 0.93252 0.91794 0.91973 0.92936 0.93341 0.91862 0.93948 0.91114 0.85023 0.85729 0.87482 0.87561 0.87444 0.86714 0.95844 0.93549 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.13 37.16 0.27 -1.64 16 2 C -0.10 -1.45 0.62 -154.51 -0.10 -1.55 16 3 C -0.14 -1.94 8.13 37.16 0.30 -1.64 16 4 C -0.14 -2.38 7.01 37.16 0.26 -2.12 16 5 C 0.14 2.43 2.14 -68.87 -0.15 2.28 16 6 H 0.12 2.55 5.92 -51.93 -0.31 2.25 16 7 N -0.84 -13.09 8.84 -5.66 -0.05 -13.14 16 8 C -0.07 -1.29 3.86 -104.62 -0.40 -1.69 16 9 C -0.11 -1.87 7.25 -39.58 -0.29 -2.16 16 10 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 11 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 12 C -0.13 -2.56 9.69 -39.59 -0.38 -2.94 16 13 C -0.03 -0.63 3.99 -104.63 -0.42 -1.04 16 14 C 0.04 0.92 3.99 -29.03 -0.12 0.80 16 15 C -0.50 -13.91 8.48 -34.44 -0.29 -14.20 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.55 6.40 -51.93 -0.33 0.22 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.91 6.20 -51.93 -0.32 0.58 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.58 6.76 -51.93 -0.35 0.23 16 29 H 0.06 1.15 5.86 -51.93 -0.30 0.84 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.34 6.63 -51.93 -0.34 0.99 16 32 H 0.34 4.69 7.39 -39.29 -0.29 4.40 16 33 H 0.33 4.48 5.35 -39.29 -0.21 4.27 16 34 H 0.11 1.58 6.04 -52.49 -0.32 1.26 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 39 H 0.05 1.15 3.69 -51.93 -0.19 0.96 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -28.74 301.91 -7.88 -36.63 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.89 Total: 10.21 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: -2.21 Total: -29.82 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.69 Total: -38.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.74 -7.88 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.229 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds