Wall clock time and date at job start Mon Mar 30 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47135 * 2 1 4 4 C 1.52997 * 109.46959 * 239.99591 * 2 1 3 5 5 C 1.53002 * 109.47010 * 120.00047 * 2 1 3 6 6 H 1.08993 * 109.47100 * 179.71243 * 5 2 1 7 7 N 1.46896 * 109.47043 * 299.71094 * 5 2 1 8 8 C 1.50696 * 109.47139 * 59.71157 * 5 2 1 9 9 C 1.38265 * 120.00249 * 276.40513 * 8 5 2 10 10 C 1.38204 * 120.00149 * 180.02562 * 9 8 5 11 11 C 1.38262 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.38211 * 119.99798 * 359.97438 * 11 10 9 13 13 C 1.38214 * 120.00040 * 96.31758 * 8 5 2 14 14 C 1.50697 * 119.99862 * 0.05748 * 13 8 5 15 15 C 1.50704 * 109.46831 * 86.15819 * 14 13 8 16 16 H 1.08002 * 119.99981 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00255 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00157 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47121 * 60.00105 * 19 17 15 21 21 H 1.48504 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47181 * 300.00050 * 19 17 15 23 23 H 1.09001 * 109.46611 * 295.29762 * 1 2 3 24 24 H 1.08998 * 109.47213 * 55.28787 * 1 2 3 25 25 H 1.08997 * 109.47188 * 175.29704 * 1 2 3 26 26 H 1.09002 * 109.46618 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47152 * 299.99567 * 3 2 1 28 28 H 1.09000 * 109.47407 * 59.99834 * 3 2 1 29 29 H 1.08998 * 109.47642 * 294.18761 * 4 2 1 30 30 H 1.09001 * 109.46844 * 54.18289 * 4 2 1 31 31 H 1.09002 * 109.47286 * 174.17669 * 4 2 1 32 32 H 1.00903 * 111.00528 * 296.04942 * 7 5 2 33 33 H 1.00903 * 111.00331 * 60.00495 * 7 5 2 34 34 H 1.07999 * 119.99283 * 0.27367 * 9 8 5 35 35 H 1.07997 * 120.00021 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00026 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.00000 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47581 * 206.15357 * 14 13 8 39 39 H 1.09000 * 109.47395 * 326.15983 * 14 13 8 40 40 H 0.97001 * 120.00115 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1299 -0.7258 1.2467 7 7 1.5561 -0.0248 2.4486 8 6 1.5319 -2.1400 1.2528 9 6 0.2668 -2.4200 1.7356 10 6 -0.1990 -3.7212 1.7393 11 6 0.5998 -4.7428 1.2598 12 6 1.8639 -4.4627 0.7763 13 6 2.3296 -3.1610 0.7719 14 6 3.7082 -2.8557 0.2451 15 6 4.6926 -2.8524 1.3862 16 1 4.3539 -3.0519 2.3921 17 6 6.0257 -2.5958 1.1459 18 7 6.4383 -2.3534 -0.0792 19 14 7.2457 -2.5910 2.5604 20 1 7.2494 -3.9237 3.2155 21 1 8.6042 -2.2903 2.0414 22 1 6.8535 -1.5546 3.5489 23 1 -0.3632 0.4392 0.9291 24 1 -0.3633 0.5852 -0.8447 25 1 -0.3633 -1.0242 -0.0843 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.7642 -1.7746 -1.1987 30 1 1.5941 -0.2712 -2.1361 31 1 3.1250 -0.6320 -1.3029 32 1 1.9355 0.9087 2.5027 33 1 0.5475 -0.0071 2.4744 34 1 -0.3587 -1.6214 2.1060 35 1 -1.1869 -3.9400 2.1167 36 1 0.2359 -5.7597 1.2632 37 1 2.4880 -5.2608 0.4022 38 1 3.9963 -3.6158 -0.4810 39 1 3.7052 -1.8771 -0.2350 40 1 7.3763 -2.1732 -0.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:11 Heat of formation + Delta-G solvation = -12.179583 kcal Electronic energy + Delta-G solvation = -18997.715617 eV Core-core repulsion = 16389.622034 eV Total energy + Delta-G solvation = -2608.093582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15953 -38.33295 -35.47268 -33.54694 -33.08792 -31.26026 -28.88450 -28.22003 -27.93341 -25.94412 -24.96984 -22.42699 -21.63087 -19.39636 -18.48080 -17.61940 -16.76392 -16.42513 -16.25879 -15.69859 -15.62328 -15.03833 -14.89598 -14.43893 -13.97247 -13.82523 -13.35753 -13.29495 -13.13108 -12.96976 -12.81247 -12.67384 -12.57809 -12.48574 -12.20289 -12.09475 -11.86539 -11.61611 -11.38233 -11.35247 -10.96967 -10.51350 -9.58658 -9.41960 -9.10863 -8.15923 -6.26109 0.68586 0.75451 1.37677 1.39458 1.47685 2.40848 3.08453 3.14352 3.75711 3.89597 3.94083 4.04057 4.22791 4.28866 4.36288 4.46878 4.60975 4.70182 4.76252 4.81047 4.85815 4.88441 5.01077 5.04542 5.14300 5.15032 5.23756 5.28220 5.35609 5.43946 5.50300 5.54635 5.61150 5.75619 5.77753 5.88354 6.21418 6.22763 6.35528 6.41086 6.76367 6.85196 7.40225 8.92117 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.009256 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.383067 B = 3024.179233 C = 3757.032909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.137 4.137 5 C 0.143 3.857 6 H 0.064 0.936 7 N -0.840 5.840 8 C -0.074 4.074 9 C -0.108 4.108 10 C -0.142 4.142 11 C -0.125 4.125 12 C -0.150 4.150 13 C -0.063 4.063 14 C 0.050 3.950 15 C -0.515 4.515 16 H 0.042 0.958 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.270 1.270 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.346 0.654 33 H 0.344 0.656 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.103 0.897 38 H -0.013 1.013 39 H 0.039 0.961 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 4.917 1.305 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.197 4.197 4 C -0.194 4.194 5 C 0.031 3.969 6 H 0.082 0.918 7 N -0.373 5.373 8 C -0.075 4.075 9 C -0.126 4.126 10 C -0.160 4.160 11 C -0.143 4.143 12 C -0.169 4.169 13 C -0.064 4.064 14 C 0.014 3.986 15 C -0.553 4.553 16 H 0.061 0.939 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.196 1.196 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.005 0.995 39 H 0.057 0.943 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.857 4.399 1.638 14.631 hybrid contribution 1.051 0.284 -0.344 1.142 sum -12.806 4.683 1.294 13.697 Atomic orbital electron populations 1.21933 0.92971 1.02185 1.02438 1.21175 0.97107 0.95748 0.95240 1.21870 1.00314 0.94713 1.02771 1.21923 0.99879 1.00070 0.97564 1.20210 0.98880 0.89717 0.88074 0.91788 1.58886 1.14166 1.23660 1.40564 1.19578 0.94378 0.94471 0.99045 1.21070 0.94880 0.97369 0.99279 1.21304 1.00782 0.92464 1.01413 1.21281 0.93571 1.00269 0.99194 1.21128 0.97102 0.95887 1.02739 1.20277 0.95870 0.93542 0.96702 1.18346 0.88488 0.96889 0.94913 1.21236 0.92872 1.47468 0.93761 0.93924 1.25742 1.00069 0.95050 0.97931 1.70057 1.16303 1.49269 1.20988 0.85689 0.78032 0.78819 0.79679 1.19802 1.20504 1.19553 0.91381 0.91545 0.92657 0.94373 0.91179 0.91162 0.93763 0.91756 0.94610 0.83912 0.83977 0.84496 0.83460 0.84378 0.87883 0.99503 0.94328 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.13 71.98 0.51 -2.68 16 2 C -0.09 -2.69 0.62 -52.18 -0.03 -2.72 16 3 C -0.14 -3.62 8.13 71.98 0.59 -3.03 16 4 C -0.14 -4.76 7.01 71.98 0.50 -4.25 16 5 C 0.14 5.13 2.14 44.17 0.09 5.22 16 6 H 0.06 2.99 5.92 -2.39 -0.01 2.97 16 7 N -0.84 -24.75 8.84 -171.82 -1.52 -26.27 16 8 C -0.07 -2.83 3.86 -19.86 -0.08 -2.91 16 9 C -0.11 -3.34 7.25 22.27 0.16 -3.18 16 10 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 11 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 12 C -0.15 -6.13 9.69 22.27 0.22 -5.92 16 13 C -0.06 -2.85 3.99 -19.87 -0.08 -2.93 16 14 C 0.05 2.69 3.99 29.10 0.12 2.80 16 15 C -0.52 -29.97 8.48 25.60 0.22 -29.75 16 16 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 19 Si 0.95 45.62 29.54 68.60 2.03 47.64 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H 0.07 1.29 6.40 -2.39 -0.02 1.28 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.39 6.20 -2.39 -0.01 1.38 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.50 6.76 -2.39 -0.02 1.48 16 29 H 0.04 1.68 5.86 -2.39 -0.01 1.67 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.46 6.63 -2.39 -0.02 1.44 16 32 H 0.35 9.03 7.39 -89.69 -0.66 8.37 16 33 H 0.34 8.15 5.35 -89.69 -0.48 7.67 16 34 H 0.14 3.39 6.04 -2.91 -0.02 3.37 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 38 H -0.01 -0.79 8.06 -2.39 -0.02 -0.81 16 39 H 0.04 2.10 3.69 -2.39 -0.01 2.09 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -65.90 301.91 3.82 -62.08 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.10 Total: 28.16 kcal Atomic # 6 Polarization: -59.09 SS G_CDS: 3.13 Total: -55.96 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.23 Total: -81.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.90 3.82 -62.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.897 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds