Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.52997 * 109.47415 * 239.99860 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99733 * 2 1 3 6 6 H 1.09001 * 109.47289 * 180.02562 * 5 2 1 7 7 N 1.46906 * 109.47110 * 60.00036 * 5 2 1 8 8 C 1.50697 * 109.47466 * 300.00004 * 5 2 1 9 9 C 1.38240 * 119.99637 * 79.72512 * 8 5 2 10 10 C 1.38239 * 119.99597 * 179.78956 * 9 8 5 11 11 C 1.38230 * 120.00096 * 0.46697 * 10 9 8 12 12 C 1.50705 * 120.00211 * 179.79208 * 11 10 9 13 13 C 1.50705 * 109.46925 * 269.97441 * 12 11 10 14 14 H 1.08000 * 119.99461 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99810 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47166 * 120.00072 * 17 15 13 20 20 H 1.48507 * 109.47044 * 240.00080 * 17 15 13 21 21 C 1.38240 * 120.00190 * 359.76521 * 11 10 9 22 22 C 1.38230 * 119.99621 * 0.02562 * 21 11 10 23 23 H 1.08996 * 109.47407 * 300.00487 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46997 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47054 * 299.99700 * 3 2 1 28 28 H 1.09000 * 109.47380 * 60.00304 * 3 2 1 29 29 H 1.09002 * 109.47045 * 300.00068 * 4 2 1 30 30 H 1.09000 * 109.47140 * 59.99976 * 4 2 1 31 31 H 1.08998 * 109.47624 * 180.02562 * 4 2 1 32 32 H 1.00896 * 111.00309 * 299.99732 * 7 5 2 33 33 H 1.00902 * 110.99923 * 63.95895 * 7 5 2 34 34 H 1.07993 * 120.00667 * 0.02562 * 9 8 5 35 35 H 1.08003 * 119.99923 * 180.25541 * 10 9 8 36 36 H 1.08997 * 109.47018 * 29.97370 * 12 11 10 37 37 H 1.09000 * 109.47552 * 149.97836 * 12 11 10 38 38 H 0.97011 * 119.99561 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.00001 * 180.02562 * 21 11 10 40 40 H 1.08003 * 119.99865 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1299 -0.7208 1.2496 7 7 1.5502 -2.1062 1.2493 8 6 1.5376 -0.0108 2.4797 9 6 0.2447 -0.2227 2.9207 10 6 -0.2147 0.4256 4.0519 11 6 0.6156 1.2932 4.7365 12 6 0.1133 2.0036 5.9670 13 6 -0.5113 3.3162 5.5694 14 1 -0.5419 3.6066 4.5297 15 6 -1.0447 4.1457 6.5329 16 7 -1.0079 3.7917 7.7990 17 14 -1.8196 5.7724 6.0400 18 1 -1.7354 5.9343 4.5663 19 1 -3.2442 5.7890 6.4587 20 1 -1.0956 6.8866 6.7032 21 6 1.9070 1.5088 4.2927 22 6 2.3677 0.8572 3.1641 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7217 -1.2490 32 1 0.5416 -2.1332 1.2493 33 1 1.9258 -2.6226 0.4680 34 1 -0.4052 -0.8977 2.3838 35 1 -1.2235 0.2569 4.3988 36 1 -0.6311 1.3833 6.4661 37 1 0.9462 2.1884 6.6454 38 1 -1.3829 4.3756 8.4769 39 1 2.5558 2.1863 4.8279 40 1 3.3765 1.0259 2.8171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261339793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -2.146080 kcal Electronic energy + Delta-G solvation = -18106.643484 eV Core-core repulsion = 15498.984987 eV Total energy + Delta-G solvation = -2607.658497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80756 -37.38708 -33.46122 -32.47413 -31.01530 -30.27713 -27.83910 -27.36000 -26.66013 -24.59853 -22.54569 -21.82922 -20.00815 -18.63837 -16.47931 -16.25614 -15.52219 -15.11467 -14.69979 -14.51096 -14.14331 -14.03317 -13.75072 -12.83347 -12.73769 -12.52156 -12.30052 -12.11645 -11.94931 -11.69087 -11.49783 -11.25795 -11.20104 -11.16007 -10.77374 -10.67323 -10.60590 -10.33910 -10.13117 -9.50883 -9.38428 -8.63263 -8.41810 -8.17136 -7.61040 -6.03215 -4.06898 2.12719 2.13746 3.29318 3.36932 3.41871 4.36063 4.51177 4.64849 4.74676 4.80959 4.85465 5.28629 5.31282 5.37779 5.44517 5.50083 5.58575 5.62656 5.72191 5.78157 5.79831 5.93967 5.99170 6.05278 6.14607 6.27679 6.33918 6.36256 6.39231 6.69545 6.78240 7.08144 7.24109 7.24328 7.27720 7.45868 7.53914 7.80121 7.90371 7.92992 8.34003 8.98723 9.56851 11.06655 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.005192 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.831211 B = 5392.131663 C = 5719.012281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.143 4.143 5 C 0.148 3.852 6 H 0.080 0.920 7 N -0.840 5.840 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.126 4.126 11 C -0.034 4.034 12 C 0.046 3.954 13 C -0.509 4.509 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.124 4.124 22 C -0.115 4.115 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.339 0.661 33 H 0.336 0.664 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 -8.727 -15.696 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.037 3.963 6 H 0.099 0.901 7 N -0.370 5.370 8 C -0.100 4.100 9 C -0.126 4.126 10 C -0.144 4.144 11 C -0.034 4.034 12 C 0.010 3.990 13 C -0.547 4.547 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.539 -8.761 -14.817 18.083 hybrid contribution -0.919 1.239 -1.121 1.907 sum 4.620 -7.522 -15.938 18.220 Atomic orbital electron populations 1.22075 0.94641 1.01243 1.02907 1.21270 0.96281 0.96833 0.95625 1.21843 1.00543 0.95077 1.02311 1.21906 1.00945 0.99818 0.97368 1.20276 0.98705 0.86584 0.90766 0.90143 1.58998 1.14275 1.13031 1.50673 1.19290 0.94568 0.99259 0.96865 1.20732 0.95149 0.99863 0.96883 1.21042 0.99745 0.97924 0.95708 1.20656 0.92487 0.92717 0.97514 1.18363 0.96618 0.94589 0.89479 1.21096 1.37633 1.02484 0.93512 0.92489 1.25010 0.96117 0.98309 0.94921 1.69975 1.45938 1.37415 1.00016 0.86500 0.78989 0.83634 0.78726 1.19707 1.20949 1.20937 1.21024 0.96357 1.00098 0.96753 1.20805 0.98668 0.97850 0.96047 0.90749 0.92937 0.93302 0.92941 0.93180 0.91406 0.93046 0.92588 0.92623 0.84565 0.85112 0.87489 0.86703 0.95416 0.95408 0.92927 0.86629 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.07 37.16 0.26 -1.43 16 2 C -0.10 -1.05 0.62 -154.51 -0.10 -1.15 16 3 C -0.14 -1.63 8.07 37.16 0.30 -1.33 16 4 C -0.14 -1.25 8.14 37.16 0.30 -0.94 16 5 C 0.15 1.81 2.47 -68.86 -0.17 1.64 16 6 H 0.08 0.99 8.00 -51.93 -0.42 0.57 16 7 N -0.84 -9.32 8.89 -5.65 -0.05 -9.37 16 8 C -0.10 -1.54 3.81 -104.62 -0.40 -1.94 16 9 C -0.11 -1.78 7.07 -39.58 -0.28 -2.06 16 10 C -0.13 -2.48 9.70 -39.58 -0.38 -2.87 16 11 C -0.03 -0.74 5.07 -104.62 -0.53 -1.27 16 12 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 13 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.12 -2.45 9.70 -39.58 -0.38 -2.84 16 22 C -0.12 -1.92 8.71 -39.59 -0.34 -2.27 16 23 H 0.07 1.00 5.58 -51.93 -0.29 0.71 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.48 6.67 -51.93 -0.35 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.95 6.64 -51.93 -0.34 0.60 16 29 H 0.05 0.40 6.76 -51.93 -0.35 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.34 3.63 5.54 -39.29 -0.22 3.41 16 33 H 0.34 3.02 7.40 -39.29 -0.29 2.73 16 34 H 0.11 1.52 5.84 -52.49 -0.31 1.21 16 35 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.54 8.04 -52.48 -0.42 1.12 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -29.58 312.61 -8.23 -37.81 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.32 Total: 4.61 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.28 Total: -28.51 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.69 Total: -35.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.58 -8.23 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.661 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds