Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.52997 * 109.47415 * 239.99860 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99733 * 2 1 3 6 6 H 1.09001 * 109.47289 * 180.02562 * 5 2 1 7 7 N 1.46906 * 109.47110 * 60.00036 * 5 2 1 8 8 C 1.50697 * 109.47466 * 300.00004 * 5 2 1 9 9 C 1.38240 * 119.99637 * 79.72512 * 8 5 2 10 10 C 1.38239 * 119.99597 * 179.78956 * 9 8 5 11 11 C 1.38230 * 120.00096 * 0.46697 * 10 9 8 12 12 C 1.50705 * 120.00211 * 179.79208 * 11 10 9 13 13 C 1.50705 * 109.46925 * 269.97441 * 12 11 10 14 14 H 1.08000 * 119.99461 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99810 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47166 * 120.00072 * 17 15 13 20 20 H 1.48507 * 109.47044 * 240.00080 * 17 15 13 21 21 C 1.38240 * 120.00190 * 359.76521 * 11 10 9 22 22 C 1.38230 * 119.99621 * 0.02562 * 21 11 10 23 23 H 1.08996 * 109.47407 * 300.00487 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46997 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47054 * 299.99700 * 3 2 1 28 28 H 1.09000 * 109.47380 * 60.00304 * 3 2 1 29 29 H 1.09002 * 109.47045 * 300.00068 * 4 2 1 30 30 H 1.09000 * 109.47140 * 59.99976 * 4 2 1 31 31 H 1.08998 * 109.47624 * 180.02562 * 4 2 1 32 32 H 1.00896 * 111.00309 * 299.99732 * 7 5 2 33 33 H 1.00902 * 110.99923 * 63.95895 * 7 5 2 34 34 H 1.07993 * 120.00667 * 0.02562 * 9 8 5 35 35 H 1.08003 * 119.99923 * 180.25541 * 10 9 8 36 36 H 1.08997 * 109.47018 * 29.97370 * 12 11 10 37 37 H 1.09000 * 109.47552 * 149.97836 * 12 11 10 38 38 H 0.97011 * 119.99561 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.00001 * 180.02562 * 21 11 10 40 40 H 1.08003 * 119.99865 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1299 -0.7208 1.2496 7 7 1.5502 -2.1062 1.2493 8 6 1.5376 -0.0108 2.4797 9 6 0.2447 -0.2227 2.9207 10 6 -0.2147 0.4256 4.0519 11 6 0.6156 1.2932 4.7365 12 6 0.1133 2.0036 5.9670 13 6 -0.5113 3.3162 5.5694 14 1 -0.5419 3.6066 4.5297 15 6 -1.0447 4.1457 6.5329 16 7 -1.0079 3.7917 7.7990 17 14 -1.8196 5.7724 6.0400 18 1 -1.7354 5.9343 4.5663 19 1 -3.2442 5.7890 6.4587 20 1 -1.0956 6.8866 6.7032 21 6 1.9070 1.5088 4.2927 22 6 2.3677 0.8572 3.1641 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7217 -1.2490 32 1 0.5416 -2.1332 1.2493 33 1 1.9258 -2.6226 0.4680 34 1 -0.4052 -0.8977 2.3838 35 1 -1.2235 0.2569 4.3988 36 1 -0.6311 1.3833 6.4661 37 1 0.9462 2.1884 6.6454 38 1 -1.3829 4.3756 8.4769 39 1 2.5558 2.1863 4.8279 40 1 3.3765 1.0259 2.8171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261339793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = -19.191758 kcal Electronic energy + Delta-G solvation = -18107.382640 eV Core-core repulsion = 15498.984987 eV Total energy + Delta-G solvation = -2608.397653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99717 -38.64238 -35.39962 -33.66118 -32.56269 -31.71212 -29.34912 -28.23812 -27.73461 -26.09316 -24.21515 -23.27037 -21.50101 -19.58801 -18.53234 -17.56655 -16.77641 -16.39159 -16.22253 -15.73227 -15.50410 -15.09142 -14.86987 -14.50628 -14.16255 -14.01076 -13.55373 -13.24500 -13.12825 -12.98861 -12.85653 -12.66698 -12.57179 -12.47365 -12.33425 -12.11896 -11.67049 -11.62549 -11.57158 -11.44220 -11.19396 -10.62783 -9.64308 -9.54794 -9.11515 -8.21260 -6.35280 0.66081 0.67170 1.37720 1.37774 1.51642 2.38148 3.03481 3.08744 3.69393 3.85945 3.89592 3.98435 4.13183 4.26104 4.28243 4.42738 4.54961 4.61437 4.75877 4.79617 4.83806 4.90557 4.92771 5.05260 5.10047 5.13715 5.15269 5.24056 5.33443 5.38466 5.41706 5.46543 5.51681 5.66012 5.76000 5.81032 6.13198 6.13393 6.29131 6.33521 6.69978 6.77568 7.33389 8.87984 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.005192 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.831211 B = 5392.131663 C = 5719.012281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.138 4.138 5 C 0.153 3.847 6 H 0.089 0.911 7 N -0.844 5.844 8 C -0.085 4.085 9 C -0.098 4.098 10 C -0.141 4.141 11 C -0.069 4.069 12 C 0.056 3.944 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.138 4.138 22 C -0.110 4.110 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.343 0.657 33 H 0.352 0.648 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.266 0.734 39 H 0.108 0.892 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -9.443 -18.784 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.094 4.094 3 C -0.199 4.199 4 C -0.196 4.196 5 C 0.041 3.959 6 H 0.107 0.893 7 N -0.377 5.377 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.159 4.159 11 C -0.069 4.069 12 C 0.019 3.981 13 C -0.564 4.564 14 H 0.071 0.929 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.156 4.156 22 C -0.128 4.128 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.099 -9.494 -17.920 21.177 hybrid contribution -1.052 1.382 -0.218 1.750 sum 5.047 -8.112 -18.138 20.501 Atomic orbital electron populations 1.22080 0.95004 1.02007 1.01939 1.21213 0.95920 0.96283 0.95979 1.21857 1.01275 0.95550 1.01258 1.21861 1.01448 1.00247 0.96012 1.20239 0.99106 0.87089 0.89426 0.89279 1.58931 1.14654 1.12233 1.51852 1.19741 0.93718 0.97812 0.97258 1.20957 0.96016 0.99224 0.95442 1.21059 0.99346 0.98429 0.97039 1.20351 0.94286 0.94972 0.97270 1.18096 0.94748 0.94250 0.90978 1.21384 1.38018 1.03618 0.93389 0.92925 1.25942 0.96476 1.02232 0.94768 1.70098 1.46790 1.39027 1.01188 0.85379 0.78196 0.78744 0.78635 1.19002 1.20034 1.20021 1.21034 0.95468 1.00928 0.98193 1.21073 1.00119 0.96982 0.94643 0.93361 0.92290 0.91673 0.91835 0.92458 0.94269 0.91704 0.92069 0.91848 0.84213 0.83263 0.84752 0.87456 0.98182 0.98168 0.92547 0.87348 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.07 71.98 0.51 -2.47 16 2 C -0.09 -1.67 0.62 -52.18 -0.03 -1.70 16 3 C -0.14 -2.94 8.07 71.98 0.58 -2.36 16 4 C -0.14 -1.81 8.14 71.98 0.59 -1.22 16 5 C 0.15 3.20 2.47 44.17 0.11 3.31 16 6 H 0.09 1.80 8.00 -2.39 -0.02 1.78 16 7 N -0.84 -15.49 8.89 -171.80 -1.53 -17.01 16 8 C -0.08 -2.46 3.81 -19.87 -0.08 -2.54 16 9 C -0.10 -3.14 7.07 22.27 0.16 -2.98 16 10 C -0.14 -5.71 9.70 22.27 0.22 -5.49 16 11 C -0.07 -3.18 5.07 -19.86 -0.10 -3.28 16 12 C 0.06 3.14 5.10 29.10 0.15 3.29 16 13 C -0.53 -30.99 9.09 25.60 0.23 -30.76 16 14 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 17 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.14 -5.61 9.70 22.27 0.22 -5.40 16 22 C -0.11 -3.55 8.71 22.27 0.19 -3.35 16 23 H 0.05 1.20 5.58 -2.39 -0.01 1.19 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.04 6.67 -2.39 -0.02 1.03 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.03 6.64 -2.39 -0.02 1.02 16 29 H 0.06 0.69 6.76 -2.39 -0.02 0.67 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.34 6.01 5.54 -89.70 -0.50 5.52 16 33 H 0.35 4.74 7.40 -89.69 -0.66 4.08 16 34 H 0.13 3.51 5.84 -2.91 -0.02 3.50 16 35 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.00 -0.01 8.09 -2.39 -0.02 -0.03 16 37 H 0.00 0.00 8.09 -2.39 -0.02 -0.02 16 38 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 39 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.14 3.58 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -66.35 312.61 3.85 -62.50 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.14 Total: 18.64 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 3.20 Total: -54.26 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.24 Total: -74.01 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.35 3.85 -62.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.309 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds