Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47571 * 2 1 4 4 C 1.53008 * 109.46851 * 240.00168 * 2 1 3 5 5 C 1.53002 * 109.47274 * 120.00634 * 2 1 3 6 6 H 1.09000 * 109.47312 * 179.97438 * 5 2 1 7 7 N 1.46899 * 109.47071 * 299.99699 * 5 2 1 8 8 C 1.50706 * 109.46925 * 59.99521 * 5 2 1 9 9 C 1.38235 * 120.00027 * 279.72526 * 8 5 2 10 10 C 1.38231 * 119.99936 * 179.79151 * 9 8 5 11 11 C 1.38242 * 119.99947 * 0.46038 * 10 9 8 12 12 C 1.50696 * 120.00027 * 179.78723 * 11 10 9 13 13 C 1.50699 * 109.47648 * 269.98545 * 12 11 10 14 14 H 1.08001 * 119.99656 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00193 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00174 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00012 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47125 * 90.00239 * 17 15 13 19 19 H 1.48509 * 109.47008 * 210.00163 * 17 15 13 20 20 H 1.48504 * 109.47041 * 330.00171 * 17 15 13 21 21 C 1.38238 * 119.99786 * 359.77722 * 11 10 9 22 22 C 1.38235 * 120.00191 * 0.02562 * 21 11 10 23 23 H 1.08996 * 109.46524 * 299.99684 * 1 2 3 24 24 H 1.09001 * 109.46962 * 59.99521 * 1 2 3 25 25 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47364 * 300.00788 * 3 2 1 28 28 H 1.09004 * 109.46785 * 60.00286 * 3 2 1 29 29 H 1.09002 * 109.47288 * 300.00339 * 4 2 1 30 30 H 1.09001 * 109.46630 * 60.00102 * 4 2 1 31 31 H 1.09000 * 109.47188 * 180.02562 * 4 2 1 32 32 H 1.00907 * 110.99802 * 59.99931 * 7 5 2 33 33 H 1.00895 * 111.00234 * 183.95066 * 7 5 2 34 34 H 1.08000 * 119.99721 * 0.02562 * 9 8 5 35 35 H 1.08000 * 120.00136 * 180.25523 * 10 9 8 36 36 H 1.08999 * 109.47208 * 29.98565 * 12 11 10 37 37 H 1.09001 * 109.47101 * 149.97761 * 12 11 10 38 38 H 0.97001 * 119.99749 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99882 * 179.97438 * 21 11 10 40 40 H 1.08000 * 120.00091 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0401 -0.7214 1.2492 6 1 3.1301 -0.7218 1.2489 7 7 1.5505 -0.0290 2.4487 8 6 1.5376 -2.1422 1.2490 9 6 0.2485 -2.4195 1.6639 10 6 -0.2138 -3.7222 1.6597 11 6 0.6163 -4.7489 1.2496 12 6 0.1139 -6.1696 1.2496 13 6 0.4055 -6.8057 2.5843 14 1 0.9051 -6.2380 3.3553 15 6 0.0354 -8.1126 2.8206 16 7 0.2904 -8.6679 3.9853 17 14 -0.8280 -9.0947 1.4867 18 1 0.1832 -9.7929 0.6530 19 1 -1.7291 -10.0951 2.1133 20 1 -1.6247 -8.1768 0.6334 21 6 1.9070 -4.4721 0.8394 22 6 2.3680 -3.1689 0.8398 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1302 1.4424 -0.0005 27 1 1.6768 1.9564 -0.8899 28 1 1.6769 1.9562 0.8901 29 1 1.6766 -1.7489 -1.2494 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7217 -1.2492 32 1 0.5418 -0.0155 2.4720 33 1 1.9260 -0.4476 3.2864 34 1 -0.3987 -1.6178 1.9877 35 1 -1.2223 -3.9384 1.9799 36 1 -0.9615 -6.1747 1.0719 37 1 0.6149 -6.7321 0.4617 38 1 0.0297 -9.5873 4.1516 39 1 2.5556 -5.2742 0.5194 40 1 3.3765 -2.9527 0.5197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261339794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = -0.162454 kcal Electronic energy + Delta-G solvation = -18066.940014 eV Core-core repulsion = 15459.367533 eV Total energy + Delta-G solvation = -2607.572481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85158 -37.34793 -33.58323 -32.63334 -31.15335 -30.42994 -27.99359 -27.28466 -26.79169 -24.65482 -22.34467 -21.95461 -20.05316 -18.57004 -16.80918 -16.31966 -15.84076 -15.14282 -14.68697 -14.41252 -14.16374 -13.95405 -13.47269 -13.06217 -12.91207 -12.55579 -12.33951 -12.17343 -12.08175 -11.86998 -11.66862 -11.58093 -11.33495 -10.71110 -10.69830 -10.67278 -10.56756 -10.25309 -10.04670 -9.99193 -9.40660 -8.73594 -8.62034 -8.34142 -7.75159 -6.11093 -4.10497 1.93743 1.96046 3.25516 3.33462 3.36046 4.31810 4.38003 4.56470 4.79397 4.91368 5.03094 5.20323 5.27384 5.33277 5.42677 5.59860 5.61578 5.67753 5.74643 5.83210 5.85071 5.93880 5.99521 6.12604 6.13245 6.14593 6.21177 6.39356 6.45536 6.49632 6.59758 6.91011 6.94123 6.97894 7.04450 7.22512 7.46185 7.56161 7.56500 7.68449 8.45668 8.93789 9.49110 11.01881 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043118 B = 0.004834 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.225569 B = 5790.760602 C = 5925.486334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.131 4.131 4 C -0.143 4.143 5 C 0.146 3.854 6 H 0.081 0.919 7 N -0.839 5.839 8 C -0.143 4.143 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.028 4.028 12 C 0.013 3.987 13 C -0.513 4.513 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.121 4.121 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.338 0.662 33 H 0.342 0.658 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 16.804 -8.480 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.054 4.054 3 C -0.189 4.189 4 C -0.201 4.201 5 C 0.034 3.966 6 H 0.099 0.901 7 N -0.368 5.368 8 C -0.145 4.145 9 C -0.137 4.137 10 C -0.139 4.139 11 C -0.028 4.028 12 C -0.024 4.024 13 C -0.551 4.551 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.139 4.139 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.121 17.304 -8.652 19.463 hybrid contribution -0.845 -1.744 -0.257 1.955 sum 1.276 15.560 -8.909 17.975 Atomic orbital electron populations 1.22061 0.94966 1.02498 1.01239 1.20448 0.95683 0.95297 0.94014 1.21754 1.00432 0.95189 1.01482 1.21903 1.00689 1.00994 0.96517 1.20346 0.98811 0.87188 0.90248 0.90119 1.59108 1.14180 1.58972 1.04550 1.20437 0.94959 0.96130 1.02933 1.20782 0.95180 0.96298 1.01401 1.21017 1.00169 0.92103 1.00610 1.20282 0.93136 0.96748 0.92642 1.18817 0.96458 0.88770 0.98337 1.20917 1.39215 0.97404 0.97587 0.90902 1.24999 0.95339 0.97472 0.95412 1.69902 1.47396 1.13994 1.22519 0.86802 0.80177 0.80170 0.82348 1.20137 1.21195 1.18966 1.21062 0.95902 0.95957 1.01007 1.20873 0.98786 0.92686 1.00677 0.92622 0.93100 0.91566 0.93264 0.93636 0.91534 0.91916 0.92981 0.92921 0.84759 0.84555 0.87288 0.86534 0.95491 0.95913 0.92567 0.86492 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 7.09 37.16 0.26 -1.35 16 2 C -0.05 -0.58 0.62 -154.50 -0.10 -0.68 16 3 C -0.13 -1.30 8.32 37.16 0.31 -0.99 16 4 C -0.14 -1.55 8.07 37.16 0.30 -1.25 16 5 C 0.15 1.73 2.41 -68.86 -0.17 1.56 16 6 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 7 N -0.84 -9.19 8.23 -5.65 -0.05 -9.23 16 8 C -0.14 -2.05 3.78 -104.62 -0.40 -2.45 16 9 C -0.12 -1.81 7.08 -39.59 -0.28 -2.09 16 10 C -0.12 -2.24 9.70 -39.58 -0.38 -2.63 16 11 C -0.03 -0.58 5.07 -104.62 -0.53 -1.11 16 12 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 13 C -0.51 -14.55 9.65 -34.44 -0.33 -14.88 16 14 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 17 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 21 C -0.12 -2.27 9.70 -39.58 -0.38 -2.65 16 22 C -0.11 -1.76 8.71 -39.58 -0.34 -2.10 16 23 H 0.05 0.56 6.67 -51.93 -0.35 0.21 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.81 5.61 -51.93 -0.29 0.51 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.68 7.60 -51.93 -0.39 0.29 16 29 H 0.06 0.78 6.64 -51.93 -0.34 0.44 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.34 3.55 5.52 -39.29 -0.22 3.33 16 33 H 0.34 3.73 9.06 -39.29 -0.36 3.38 16 34 H 0.11 1.42 5.87 -52.49 -0.31 1.12 16 35 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 37 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 40 H 0.11 1.50 8.04 -52.49 -0.42 1.08 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -29.60 311.04 -7.92 -37.51 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.40 Total: 5.66 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -2.26 Total: -28.53 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.73 Total: -35.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.60 -7.92 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.351 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds