Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47571 * 2 1 4 4 C 1.53008 * 109.46851 * 240.00168 * 2 1 3 5 5 C 1.53002 * 109.47274 * 120.00634 * 2 1 3 6 6 H 1.09000 * 109.47312 * 179.97438 * 5 2 1 7 7 N 1.46899 * 109.47071 * 299.99699 * 5 2 1 8 8 C 1.50706 * 109.46925 * 59.99521 * 5 2 1 9 9 C 1.38235 * 120.00027 * 279.72526 * 8 5 2 10 10 C 1.38231 * 119.99936 * 179.79151 * 9 8 5 11 11 C 1.38242 * 119.99947 * 0.46038 * 10 9 8 12 12 C 1.50696 * 120.00027 * 179.78723 * 11 10 9 13 13 C 1.50699 * 109.47648 * 269.98545 * 12 11 10 14 14 H 1.08001 * 119.99656 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00193 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00174 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00012 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47125 * 90.00239 * 17 15 13 19 19 H 1.48509 * 109.47008 * 210.00163 * 17 15 13 20 20 H 1.48504 * 109.47041 * 330.00171 * 17 15 13 21 21 C 1.38238 * 119.99786 * 359.77722 * 11 10 9 22 22 C 1.38235 * 120.00191 * 0.02562 * 21 11 10 23 23 H 1.08996 * 109.46524 * 299.99684 * 1 2 3 24 24 H 1.09001 * 109.46962 * 59.99521 * 1 2 3 25 25 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47364 * 300.00788 * 3 2 1 28 28 H 1.09004 * 109.46785 * 60.00286 * 3 2 1 29 29 H 1.09002 * 109.47288 * 300.00339 * 4 2 1 30 30 H 1.09001 * 109.46630 * 60.00102 * 4 2 1 31 31 H 1.09000 * 109.47188 * 180.02562 * 4 2 1 32 32 H 1.00907 * 110.99802 * 59.99931 * 7 5 2 33 33 H 1.00895 * 111.00234 * 183.95066 * 7 5 2 34 34 H 1.08000 * 119.99721 * 0.02562 * 9 8 5 35 35 H 1.08000 * 120.00136 * 180.25523 * 10 9 8 36 36 H 1.08999 * 109.47208 * 29.98565 * 12 11 10 37 37 H 1.09001 * 109.47101 * 149.97761 * 12 11 10 38 38 H 0.97001 * 119.99749 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99882 * 179.97438 * 21 11 10 40 40 H 1.08000 * 120.00091 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0401 -0.7214 1.2492 6 1 3.1301 -0.7218 1.2489 7 7 1.5505 -0.0290 2.4487 8 6 1.5376 -2.1422 1.2490 9 6 0.2485 -2.4195 1.6639 10 6 -0.2138 -3.7222 1.6597 11 6 0.6163 -4.7489 1.2496 12 6 0.1139 -6.1696 1.2496 13 6 0.4055 -6.8057 2.5843 14 1 0.9051 -6.2380 3.3553 15 6 0.0354 -8.1126 2.8206 16 7 0.2904 -8.6679 3.9853 17 14 -0.8280 -9.0947 1.4867 18 1 0.1832 -9.7929 0.6530 19 1 -1.7291 -10.0951 2.1133 20 1 -1.6247 -8.1768 0.6334 21 6 1.9070 -4.4721 0.8394 22 6 2.3680 -3.1689 0.8398 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1302 1.4424 -0.0005 27 1 1.6768 1.9564 -0.8899 28 1 1.6769 1.9562 0.8901 29 1 1.6766 -1.7489 -1.2494 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7217 -1.2492 32 1 0.5418 -0.0155 2.4720 33 1 1.9260 -0.4476 3.2864 34 1 -0.3987 -1.6178 1.9877 35 1 -1.2223 -3.9384 1.9799 36 1 -0.9615 -6.1747 1.0719 37 1 0.6149 -6.7321 0.4617 38 1 0.0297 -9.5873 4.1516 39 1 2.5556 -5.2742 0.5194 40 1 3.3765 -2.9527 0.5197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261339794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = -17.680513 kcal Electronic energy + Delta-G solvation = -18067.699654 eV Core-core repulsion = 15459.367533 eV Total energy + Delta-G solvation = -2608.332121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01949 -38.52851 -35.36487 -33.95702 -32.70894 -31.78022 -29.52202 -28.15494 -27.72879 -25.98757 -23.98946 -23.30765 -21.50974 -19.50044 -19.00743 -17.43150 -16.95545 -16.44944 -16.20931 -15.81613 -15.53000 -14.91854 -14.82224 -14.38910 -14.19241 -14.06488 -13.77798 -13.58750 -13.20323 -13.06352 -12.88383 -12.63867 -12.41939 -12.41325 -12.02549 -11.88990 -11.73146 -11.62288 -11.50481 -11.37837 -11.32871 -10.82326 -9.76217 -9.65726 -9.15294 -8.33529 -6.38903 0.56901 0.59130 1.33492 1.35129 1.47171 2.32059 2.94552 3.00718 3.65503 3.79697 4.00891 4.03784 4.16668 4.20631 4.26426 4.34160 4.57020 4.68203 4.75932 4.81285 4.89514 4.93347 4.98846 5.00298 5.03919 5.14356 5.17784 5.19653 5.32066 5.32655 5.40840 5.52374 5.53839 5.61362 5.66037 5.71104 6.00656 6.16813 6.26542 6.27977 6.58133 6.67252 7.24864 8.83134 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043118 B = 0.004834 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.225569 B = 5790.760602 C = 5925.486334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.126 4.126 4 C -0.143 4.143 5 C 0.150 3.850 6 H 0.086 0.914 7 N -0.834 5.834 8 C -0.126 4.126 9 C -0.110 4.110 10 C -0.136 4.136 11 C -0.066 4.066 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.026 0.974 15 C 0.008 3.992 16 N -0.949 5.949 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.248 1.248 21 C -0.136 4.136 22 C -0.109 4.109 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.342 0.658 33 H 0.344 0.656 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.268 0.732 39 H 0.113 0.887 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 18.762 -10.169 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.052 4.052 3 C -0.183 4.183 4 C -0.201 4.201 5 C 0.038 3.962 6 H 0.104 0.896 7 N -0.363 5.363 8 C -0.128 4.128 9 C -0.128 4.128 10 C -0.154 4.154 11 C -0.066 4.066 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.044 0.956 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.171 1.171 21 C -0.154 4.154 22 C -0.127 4.127 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.040 19.287 -10.347 21.982 hybrid contribution -0.750 -2.207 0.331 2.354 sum 1.291 17.079 -10.017 19.842 Atomic orbital electron populations 1.22057 0.94897 1.01657 1.02161 1.20440 0.95708 0.95823 0.93188 1.21699 1.00598 0.94207 1.01834 1.21902 1.01203 0.99940 0.97036 1.20400 0.99079 0.85402 0.91320 0.89643 1.59112 1.14524 1.58377 1.04268 1.20825 0.94170 0.97488 1.00297 1.21000 0.95918 0.95546 1.00314 1.21099 1.00013 0.93158 1.01168 1.20151 0.94750 0.95627 0.96085 1.18648 0.96557 0.90840 0.95649 1.21147 1.38484 0.97521 0.98681 0.95573 1.25985 0.96163 0.98715 0.98006 1.70059 1.49134 1.14681 1.25039 0.85645 0.79236 0.78541 0.79188 1.18932 1.20633 1.17113 1.21136 0.95212 0.97411 1.01676 1.21140 1.00097 0.91639 0.99870 0.91833 0.92191 0.93167 0.92975 0.92664 0.91825 0.93777 0.91967 0.92160 0.84295 0.84371 0.84682 0.86946 0.95375 0.95512 0.92291 0.86925 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 7.09 71.98 0.51 -2.29 16 2 C -0.05 -0.95 0.62 -52.18 -0.03 -0.98 16 3 C -0.13 -2.06 8.32 71.98 0.60 -1.46 16 4 C -0.14 -2.71 8.07 71.98 0.58 -2.13 16 5 C 0.15 3.12 2.41 44.17 0.11 3.23 16 6 H 0.09 1.78 8.00 -2.39 -0.02 1.76 16 7 N -0.83 -15.85 8.23 -171.79 -1.41 -17.26 16 8 C -0.13 -3.38 3.78 -19.86 -0.08 -3.46 16 9 C -0.11 -3.22 7.08 22.27 0.16 -3.06 16 10 C -0.14 -5.09 9.70 22.27 0.22 -4.87 16 11 C -0.07 -2.80 5.07 -19.86 -0.10 -2.90 16 12 C 0.02 0.99 4.17 29.10 0.12 1.11 16 13 C -0.52 -30.69 9.65 25.60 0.25 -30.44 16 14 H 0.03 1.72 7.98 -2.91 -0.02 1.70 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 17 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 21 C -0.14 -5.13 9.70 22.27 0.22 -4.91 16 22 C -0.11 -3.29 8.71 22.27 0.19 -3.09 16 23 H 0.06 1.07 6.67 -2.39 -0.02 1.06 16 24 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.10 5.61 -2.39 -0.01 1.09 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.09 7.60 -2.38 -0.02 1.08 16 29 H 0.04 1.00 6.64 -2.39 -0.02 0.99 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.34 6.14 5.52 -89.69 -0.50 5.65 16 33 H 0.34 6.61 9.06 -89.70 -0.81 5.79 16 34 H 0.14 3.21 5.87 -2.91 -0.02 3.19 16 35 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.03 1.34 7.14 -2.39 -0.02 1.32 16 37 H 0.03 1.25 7.51 -2.39 -0.02 1.24 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.14 3.36 8.04 -2.91 -0.02 3.34 16 Total: -1.00 -65.79 311.04 3.63 -62.16 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.34 Total: 22.89 kcal Atomic # 6 Polarization: -57.51 SS G_CDS: 3.20 Total: -54.30 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.11 Total: -76.94 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -65.79 3.63 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.477 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds