Wall clock time and date at job start Mon Mar 30 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47574 * 2 1 4 4 C 1.53008 * 109.46968 * 120.00012 * 2 1 3 5 5 C 1.52998 * 109.47131 * 64.99557 * 4 2 1 6 6 H 1.09001 * 109.47422 * 305.00323 * 5 4 2 7 7 N 1.46907 * 109.46926 * 65.00145 * 5 4 2 8 8 C 1.50691 * 109.47390 * 184.99906 * 5 4 2 9 9 C 1.38254 * 120.00360 * 280.02472 * 8 5 4 10 10 C 1.38216 * 120.00528 * 179.97438 * 9 8 5 11 11 C 1.38261 * 119.99683 * 359.75182 * 10 9 8 12 12 C 1.38212 * 119.99716 * 0.50410 * 11 10 9 13 13 C 1.50700 * 119.99804 * 179.77075 * 12 11 10 14 14 C 1.50706 * 109.47062 * 269.72032 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38215 * 120.00217 * 99.99886 * 8 5 4 23 23 H 1.08998 * 109.46976 * 59.99769 * 1 2 3 24 24 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46757 * 300.00311 * 1 2 3 26 26 H 1.09001 * 109.47463 * 239.99704 * 2 1 3 27 27 H 1.08996 * 109.47179 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47157 * 300.00120 * 3 2 1 29 29 H 1.09001 * 109.46862 * 59.99946 * 3 2 1 30 30 H 1.09001 * 109.47079 * 304.99750 * 4 2 1 31 31 H 1.08992 * 109.47312 * 184.99699 * 4 2 1 32 32 H 1.00905 * 110.99816 * 296.04249 * 7 5 4 33 33 H 1.00896 * 111.00177 * 59.99937 * 7 5 4 34 34 H 1.08002 * 119.99952 * 0.02562 * 9 8 5 35 35 H 1.07998 * 120.00339 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.00049 * 180.27351 * 11 10 9 37 37 H 1.09004 * 109.47406 * 149.72738 * 13 12 11 38 38 H 1.08993 * 109.47274 * 29.72364 * 13 12 11 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08009 * 119.99624 * 0.02562 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 1 0.5562 -2.2707 1.0528 7 7 2.3165 -2.8439 0.0596 8 6 2.0292 -2.8784 2.4722 9 6 3.3372 -3.2811 2.6680 10 6 3.6988 -3.9070 3.8461 11 6 2.7534 -4.1259 4.8309 12 6 1.4446 -3.7281 4.6331 13 6 0.4131 -3.9713 5.7044 14 6 -0.2334 -5.3147 5.4836 15 1 0.0725 -5.9308 4.6510 16 6 -1.2146 -5.7576 6.3450 17 7 -1.5826 -5.0101 7.3626 18 14 -2.0153 -7.4230 6.0718 19 1 -3.0268 -7.6658 7.1316 20 1 -2.6769 -7.4419 4.7423 21 1 -0.9788 -8.4851 6.1240 22 6 1.0830 -3.1019 3.4547 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1262 -0.6445 1.2953 32 1 2.0195 -2.4462 -0.8189 33 1 3.3187 -2.7876 0.1616 34 1 4.0767 -3.1058 1.9007 35 1 4.7207 -4.2211 3.9991 36 1 3.0368 -4.6110 5.7532 37 1 -0.3468 -3.1910 5.6611 38 1 0.8942 -3.9560 6.6823 39 1 -1.1666 -4.1454 7.5047 40 1 0.0611 -2.7873 3.3018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261340266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:22 Heat of formation + Delta-G solvation = -14.178232 kcal Electronic energy + Delta-G solvation = -17646.614890 eV Core-core repulsion = 15038.434639 eV Total energy + Delta-G solvation = -2608.180250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.30927 -37.35139 -34.26236 -33.32382 -30.95879 -30.20791 -27.60483 -27.34226 -26.56163 -23.59874 -23.02074 -21.39505 -20.14959 -19.26280 -16.89061 -16.43306 -15.63974 -15.38211 -14.75219 -14.29236 -14.15308 -13.90452 -13.66874 -13.25654 -13.13672 -12.71159 -12.43965 -12.28617 -12.00588 -11.73871 -11.59373 -11.35607 -11.19189 -10.96047 -10.84001 -10.74014 -10.59300 -10.17733 -10.12466 -9.77712 -8.93146 -8.71248 -8.35683 -8.11816 -7.74292 -6.36322 -4.07151 1.98269 2.11672 3.45931 3.47606 3.66384 4.33794 4.55109 4.58233 4.67783 4.73990 4.79602 5.17860 5.24802 5.34782 5.38800 5.43754 5.49053 5.52263 5.60455 5.65458 5.74551 5.79889 5.87036 5.95898 5.99904 6.14024 6.17354 6.20150 6.36307 6.55147 6.72919 7.01605 7.04976 7.16883 7.20141 7.23933 7.44892 7.69617 7.70055 8.15197 8.45882 8.85806 9.63633 11.02572 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004920 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.036907 B = 5689.693794 C = 6098.868253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.144 4.144 5 C 0.133 3.867 6 H 0.089 0.911 7 N -0.838 5.838 8 C -0.077 4.077 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.127 4.127 12 C -0.027 4.027 13 C 0.035 3.965 14 C -0.591 4.591 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.912 5.912 18 Si 1.070 2.930 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.117 4.117 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.337 0.663 33 H 0.337 0.663 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.268 0.732 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 9.939 -14.068 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.184 4.184 5 C 0.022 3.978 6 H 0.107 0.893 7 N -0.368 5.368 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.027 4.027 13 C -0.002 4.002 14 C -0.629 4.629 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.548 5.548 18 Si 0.898 3.102 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.135 4.135 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.915 8.224 -13.224 17.039 hybrid contribution 1.628 1.955 -0.803 2.668 sum 8.543 10.179 -14.027 19.323 Atomic orbital electron populations 1.21922 0.94994 1.02263 1.01756 1.21134 0.96235 0.96140 0.98101 1.21829 1.00728 0.96067 1.01743 1.22467 1.00954 0.96653 0.98309 1.20360 0.99143 0.89695 0.88623 0.89300 1.58933 1.11060 1.62616 1.04158 1.19550 0.93862 0.99661 0.94638 1.20535 0.95476 1.02114 0.97234 1.20980 0.98803 1.00007 0.94237 1.21042 0.93171 1.00980 0.99320 1.20395 0.94590 0.91981 0.95753 1.18469 0.92074 0.97812 0.91803 1.21904 1.23309 1.02552 1.15115 0.93097 1.25877 0.95246 1.04506 0.93077 1.70791 1.42877 1.12454 1.28705 0.83530 0.76280 0.74470 0.75952 1.20730 1.21352 1.21370 1.20846 0.98507 1.00612 0.93584 0.92888 0.92113 0.92436 0.91664 0.92922 0.92826 0.92582 0.91110 0.92016 0.84973 0.84950 0.87595 0.87150 0.86723 0.96376 0.96345 0.92128 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.10 16 2 C -0.10 -0.89 2.79 -90.62 -0.25 -1.14 16 3 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 4 C -0.14 -1.61 4.31 -26.73 -0.12 -1.72 16 5 C 0.13 1.77 2.91 -68.87 -0.20 1.57 16 6 H 0.09 1.25 6.21 -51.93 -0.32 0.93 16 7 N -0.84 -9.84 9.01 -5.65 -0.05 -9.89 16 8 C -0.08 -1.30 4.95 -104.63 -0.52 -1.82 16 9 C -0.14 -2.18 9.29 -39.58 -0.37 -2.55 16 10 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 11 C -0.13 -2.58 9.70 -39.58 -0.38 -2.96 16 12 C -0.03 -0.61 5.07 -104.63 -0.53 -1.14 16 13 C 0.04 0.92 4.42 -29.03 -0.13 0.79 16 14 C -0.59 -17.12 9.09 -34.44 -0.31 -17.44 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 17 N -0.91 -27.98 13.65 55.43 0.76 -27.22 16 18 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.12 -2.36 9.33 -39.58 -0.37 -2.73 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.61 6.46 -51.93 -0.34 0.28 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.55 6.65 -51.93 -0.35 0.20 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.34 3.24 7.45 -39.29 -0.29 2.94 16 33 H 0.34 3.58 7.35 -39.29 -0.29 3.29 16 34 H 0.11 1.41 6.67 -52.49 -0.35 1.06 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.02 0.49 7.96 -51.93 -0.41 0.07 16 38 H 0.02 0.50 7.94 -51.93 -0.41 0.08 16 39 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 40 H 0.11 2.28 8.04 -52.48 -0.42 1.85 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -31.03 322.18 -9.01 -40.04 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.48 Total: 4.83 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: -3.00 Total: -33.23 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.71 Total: -37.11 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.03 -9.01 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.861 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds